data_7Y1A # _model_server_result.job_id RNQCmfTbPJ9OZ1LdeYoo6Q _model_server_result.datetime_utc '2025-09-12 23:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":201}' # _entry.id 7Y1A # _exptl.entry_id 7Y1A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 588.694 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOERYTHROBILIN _entity.pdbx_number_of_molecules 31 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y1A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N ? 5 EA N N ? 5 FA N N ? 5 GA N N ? 5 HA N N ? 5 IA N N ? 5 JA N N ? 5 KA N N ? 5 LA N N ? 5 MA N N ? 5 NA N N ? 5 OA N N ? 5 PA N N ? 5 QA N N ? 5 RA N N ? 5 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 71 y GLY 71 1_555 A N MEN 72 y MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MEN 72 y MEN 72 1_555 A N CYS 73 y CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A O MEN 72 y MEN 72 1_555 A NH1 ARG 78 y ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale4 C C GLY 71 1 GLY 71 1_555 C N MEN 72 1 MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 C C MEN 72 1 MEN 72 1_555 C N CYS 73 1 CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 C O MEN 72 1 MEN 72 1_555 C NH1 ARG 78 1 ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale7 E C GLY 71 q GLY 71 1_555 E N MEN 72 q MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 E C MEN 72 q MEN 72 1_555 E N CYS 73 q CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E O MEN 72 q MEN 72 1_555 E NH1 ARG 78 q ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale10 G C GLY 71 s GLY 71 1_555 G N MEN 72 s MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 G C MEN 72 s MEN 72 1_555 G N CYS 73 s CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 G O MEN 72 s MEN 72 1_555 G NH1 ARG 78 s ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale13 I C GLY 71 u GLY 71 1_555 I N MEN 72 u MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 I C MEN 72 u MEN 72 1_555 I N CYS 73 u CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 I O MEN 72 u MEN 72 1_555 I NH1 ARG 78 u ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale16 K C GLY 71 w GLY 71 1_555 K N MEN 72 w MEN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 K C MEN 72 w MEN 72 1_555 K N CYS 73 w CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 K O MEN 72 w MEN 72 1_555 K NH1 ARG 78 w ARG 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id PEB _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOERYTHROBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y1A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 5 PEB y 1 201 201 PEB PEB . P 5 PEB y 1 202 202 PEB PEB . Q 5 PEB y 1 203 203 PEB PEB . R 5 PEB z 1 201 201 PEB PEB . S 5 PEB z 1 202 202 PEB PEB . T 5 PEB 1 1 201 201 PEB PEB . U 5 PEB 1 1 202 202 PEB PEB . V 5 PEB 1 1 203 203 PEB PEB . W 5 PEB p 1 201 201 PEB PEB . X 5 PEB p 1 202 202 PEB PEB . Y 5 PEB q 1 201 201 PEB PEB . Z 5 PEB q 1 202 202 PEB PEB . AA 5 PEB q 1 203 203 PEB PEB . BA 5 PEB r 1 201 201 PEB PEB . CA 5 PEB r 1 202 202 PEB PEB . DA 5 PEB s 1 201 201 PEB PEB . EA 5 PEB s 1 202 202 PEB PEB . FA 5 PEB s 1 203 203 PEB PEB . GA 5 PEB t 1 201 201 PEB PEB . HA 5 PEB t 1 202 202 PEB PEB . IA 5 PEB u 1 201 201 PEB PEB . JA 5 PEB u 1 202 202 PEB PEB . KA 5 PEB u 1 203 203 PEB PEB . LA 5 PEB v 1 201 201 PEB PEB . MA 5 PEB v 1 202 202 PEB PEB . NA 5 PEB w 1 201 201 PEB PEB . OA 5 PEB w 1 202 202 PEB PEB . PA 5 PEB w 1 203 203 PEB PEB . QA 5 PEB w 1 204 204 PEB PEB . RA 5 PEB x 1 201 201 PEB PEB . SA 5 PEB x 1 202 202 PEB PEB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHC PEB . . . DA 5 166.109 269.197 168.456 1 45.49 ? CHC PEB 201 s 1 HETATM 2 N NC PEB . . . DA 5 166.957 266.772 168.433 1 45.49 ? NC PEB 201 s 1 HETATM 3 C C1C PEB . . . DA 5 166.456 265.57 168.114 1 45.49 ? C1C PEB 201 s 1 HETATM 4 C C2C PEB . . . DA 5 165.039 265.622 167.698 1 45.49 ? C2C PEB 201 s 1 HETATM 5 C C3C PEB . . . DA 5 164.741 267.066 167.77 1 45.49 ? C3C PEB 201 s 1 HETATM 6 C C4C PEB . . . DA 5 166.005 267.711 168.215 1 45.49 ? C4C PEB 201 s 1 HETATM 7 C CMC PEB . . . DA 5 163.454 267.777 167.453 1 45.49 ? CMC PEB 201 s 1 HETATM 8 C CAC PEB . . . DA 5 164.152 264.456 167.315 1 45.49 ? CAC PEB 201 s 1 HETATM 9 C CBC PEB . . . DA 5 163.691 264.423 165.869 1 45.49 ? CBC PEB 201 s 1 HETATM 10 C CGC PEB . . . DA 5 164.856 264.339 164.932 1 45.49 ? CGC PEB 201 s 1 HETATM 11 O O1C PEB . . . DA 5 164.813 264.995 163.872 1 45.49 ? O1C PEB 201 s 1 HETATM 12 O O2C PEB . . . DA 5 165.837 263.639 165.264 1 45.49 ? O2C PEB 201 s 1 HETATM 13 N ND PEB . . . DA 5 165.792 269.895 166.132 1 45.49 ? ND PEB 201 s 1 HETATM 14 C C1D PEB . . . DA 5 166.581 270.125 167.358 1 45.49 ? C1D PEB 201 s 1 HETATM 15 C C2D PEB . . . DA 5 166.133 271.451 167.809 1 45.49 ? C2D PEB 201 s 1 HETATM 16 C C3D PEB . . . DA 5 165.098 272.032 166.954 1 45.49 ? C3D PEB 201 s 1 HETATM 17 C C4D PEB . . . DA 5 164.968 270.954 165.935 1 45.49 ? C4D PEB 201 s 1 HETATM 18 C CMD PEB . . . DA 5 166.776 271.979 169.069 1 45.49 ? CMD PEB 201 s 1 HETATM 19 C CAD PEB . . . DA 5 164.411 273.339 167.134 1 45.49 ? CAD PEB 201 s 1 HETATM 20 C CBD PEB . . . DA 5 163.73 273.928 166.174 1 45.49 ? CBD PEB 201 s 1 HETATM 21 O OD PEB . . . DA 5 164.165 271.006 164.929 1 45.49 ? OD PEB 201 s 1 HETATM 22 N NA PEB . . . DA 5 172.317 263.598 171.768 1 45.49 ? NA PEB 201 s 1 HETATM 23 C C1A PEB . . . DA 5 173.372 263.383 172.541 1 45.49 ? C1A PEB 201 s 1 HETATM 24 C C2A PEB . . . DA 5 174.457 264.361 172.225 1 45.49 ? C2A PEB 201 s 1 HETATM 25 C C3A PEB . . . DA 5 174.047 264.903 170.859 1 45.49 ? C3A PEB 201 s 1 HETATM 26 C C4A PEB . . . DA 5 172.667 264.333 170.719 1 45.49 ? C4A PEB 201 s 1 HETATM 27 C CMA PEB . . . DA 5 174.487 265.454 173.277 1 45.49 ? CMA PEB 201 s 1 HETATM 28 C CBA PEB . . . DA 5 176.242 263.795 169.975 1 45.49 ? CBA PEB 201 s 1 HETATM 29 O OA PEB . . . DA 5 173.487 262.51 173.383 1 45.49 ? OA PEB 201 s 1 HETATM 30 C CHA PEB . . . DA 5 171.92 264.525 169.626 1 45.49 ? CHA PEB 201 s 1 HETATM 31 C CAA PEB . . . DA 5 174.905 264.445 169.64 1 45.49 ? CAA PEB 201 s 1 HETATM 32 N NB PEB . . . DA 5 169.562 264.812 168.958 1 45.49 ? NB PEB 201 s 1 HETATM 33 C C1B PEB . . . DA 5 170.6 263.984 169.3 1 45.49 ? C1B PEB 201 s 1 HETATM 34 C C2B PEB . . . DA 5 170.368 262.513 169.181 1 45.49 ? C2B PEB 201 s 1 HETATM 35 C C3B PEB . . . DA 5 168.952 262.452 168.767 1 45.49 ? C3B PEB 201 s 1 HETATM 36 C C4B PEB . . . DA 5 168.564 263.904 168.68 1 45.49 ? C4B PEB 201 s 1 HETATM 37 C CHB PEB . . . DA 5 167.193 264.287 168.254 1 45.49 ? CHB PEB 201 s 1 HETATM 38 C CMB PEB . . . DA 5 171.312 261.351 169.433 1 45.49 ? CMB PEB 201 s 1 HETATM 39 C CAB PEB . . . DA 5 168.127 261.189 168.522 1 45.49 ? CAB PEB 201 s 1 HETATM 40 C CBB PEB . . . DA 5 168.493 260.401 167.254 1 45.49 ? CBB PEB 201 s 1 HETATM 41 C CGB PEB . . . DA 5 168.432 258.89 167.457 1 45.49 ? CGB PEB 201 s 1 HETATM 42 O O1B PEB . . . DA 5 167.329 258.324 167.281 1 45.49 ? O1B PEB 201 s 1 HETATM 43 O O2B PEB . . . DA 5 169.466 258.229 167.794 1 45.49 ? O2B PEB 201 s 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #