data_7Y1H # _model_server_result.job_id kaonLQ4OKZrRUd7lH5Grpw _model_server_result.datetime_utc '2025-08-31 02:47:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":2604}' # _entry.id 7Y1H # _exptl.entry_id 7Y1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.2 _cell.angle_gamma 90 _cell.entry_id 7Y1H _cell.length_a 71.698 _cell.length_b 92.364 _cell.length_c 87.504 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 448 A CYS 1448 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc2 A SG CYS 453 A CYS 1453 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 A SG CYS 495 A CYS 1495 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A SG CYS 497 A CYS 1497 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc5 D O3G ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 D O2B ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 D O1G ATP . A ATP 2602 1_555 G MG MG . A MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc8 D O1B ATP . A ATP 2602 1_555 G MG MG . A MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 B SG CYS 448 B CYS 1448 1_555 J ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 B SG CYS 453 B CYS 1453 1_555 J ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 B SG CYS 495 B CYS 1495 1_555 J ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc12 I O2B ATP . B ATP 2602 1_555 K MG MG . B MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 I O1B ATP . B ATP 2602 1_555 L MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y1H _atom_sites.fract_transf_matrix[1][1] 0.013947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004586 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010827 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F99 A 1 2601 2601 F99 748 . D 3 ATP A 1 2602 2602 ATP ATP . E 4 ZN A 1 2603 2603 ZN ZN . F 5 MG A 1 2604 2604 MG MG . G 5 MG A 1 2605 2605 MG MG . H 2 F99 B 1 2601 2601 F99 748 . I 3 ATP B 1 2602 2602 ATP ATP . J 4 ZN B 1 2603 2603 ZN ZN . K 5 MG B 1 2604 2604 MG MG . L 5 MG B 1 2605 2605 MG MG . M 6 HOH A 1 2701 76 HOH HOH . M 6 HOH A 2 2702 1 HOH HOH . M 6 HOH A 3 2703 101 HOH HOH . M 6 HOH A 4 2704 48 HOH HOH . M 6 HOH A 5 2705 127 HOH HOH . M 6 HOH A 6 2706 182 HOH HOH . M 6 HOH A 7 2707 25 HOH HOH . M 6 HOH A 8 2708 21 HOH HOH . M 6 HOH A 9 2709 91 HOH HOH . M 6 HOH A 10 2710 3 HOH HOH . M 6 HOH A 11 2711 159 HOH HOH . M 6 HOH A 12 2712 28 HOH HOH . M 6 HOH A 13 2713 81 HOH HOH . M 6 HOH A 14 2714 185 HOH HOH . M 6 HOH A 15 2715 135 HOH HOH . M 6 HOH A 16 2716 54 HOH HOH . M 6 HOH A 17 2717 32 HOH HOH . M 6 HOH A 18 2718 103 HOH HOH . M 6 HOH A 19 2719 24 HOH HOH . M 6 HOH A 20 2720 155 HOH HOH . M 6 HOH A 21 2721 129 HOH HOH . M 6 HOH A 22 2722 14 HOH HOH . M 6 HOH A 23 2723 72 HOH HOH . M 6 HOH A 24 2724 16 HOH HOH . M 6 HOH A 25 2725 20 HOH HOH . M 6 HOH A 26 2726 61 HOH HOH . M 6 HOH A 27 2727 123 HOH HOH . M 6 HOH A 28 2728 115 HOH HOH . M 6 HOH A 29 2729 15 HOH HOH . M 6 HOH A 30 2730 96 HOH HOH . M 6 HOH A 31 2731 52 HOH HOH . M 6 HOH A 32 2732 17 HOH HOH . M 6 HOH A 33 2733 4 HOH HOH . M 6 HOH A 34 2734 43 HOH HOH . M 6 HOH A 35 2735 177 HOH HOH . M 6 HOH A 36 2736 18 HOH HOH . M 6 HOH A 37 2737 181 HOH HOH . M 6 HOH A 38 2738 125 HOH HOH . M 6 HOH A 39 2739 87 HOH HOH . M 6 HOH A 40 2740 148 HOH HOH . M 6 HOH A 41 2741 133 HOH HOH . M 6 HOH A 42 2742 136 HOH HOH . M 6 HOH A 43 2743 151 HOH HOH . M 6 HOH A 44 2744 120 HOH HOH . M 6 HOH A 45 2745 13 HOH HOH . M 6 HOH A 46 2746 110 HOH HOH . M 6 HOH A 47 2747 68 HOH HOH . M 6 HOH A 48 2748 89 HOH HOH . M 6 HOH A 49 2749 180 HOH HOH . M 6 HOH A 50 2750 92 HOH HOH . M 6 HOH A 51 2751 169 HOH HOH . M 6 HOH A 52 2752 33 HOH HOH . M 6 HOH A 53 2753 31 HOH HOH . M 6 HOH A 54 2754 193 HOH HOH . M 6 HOH A 55 2755 22 HOH HOH . M 6 HOH A 56 2756 196 HOH HOH . M 6 HOH A 57 2757 104 HOH HOH . M 6 HOH A 58 2758 71 HOH HOH . M 6 HOH A 59 2759 126 HOH HOH . M 6 HOH A 60 2760 142 HOH HOH . M 6 HOH A 61 2761 201 HOH HOH . M 6 HOH A 62 2762 172 HOH HOH . M 6 HOH A 63 2763 35 HOH HOH . M 6 HOH A 64 2764 139 HOH HOH . M 6 HOH A 65 2765 12 HOH HOH . M 6 HOH A 66 2766 153 HOH HOH . M 6 HOH A 67 2767 41 HOH HOH . M 6 HOH A 68 2768 93 HOH HOH . M 6 HOH A 69 2769 114 HOH HOH . M 6 HOH A 70 2770 65 HOH HOH . M 6 HOH A 71 2771 56 HOH HOH . M 6 HOH A 72 2772 107 HOH HOH . M 6 HOH A 73 2773 7 HOH HOH . M 6 HOH A 74 2774 186 HOH HOH . M 6 HOH A 75 2775 189 HOH HOH . M 6 HOH A 76 2776 84 HOH HOH . M 6 HOH A 77 2777 74 HOH HOH . M 6 HOH A 78 2778 99 HOH HOH . M 6 HOH A 79 2779 168 HOH HOH . M 6 HOH A 80 2780 158 HOH HOH . M 6 HOH A 81 2781 166 HOH HOH . M 6 HOH A 82 2782 42 HOH HOH . M 6 HOH A 83 2783 187 HOH HOH . M 6 HOH A 84 2784 60 HOH HOH . M 6 HOH A 85 2785 38 HOH HOH . M 6 HOH A 86 2786 19 HOH HOH . M 6 HOH A 87 2787 117 HOH HOH . M 6 HOH A 88 2788 8 HOH HOH . M 6 HOH A 89 2789 112 HOH HOH . M 6 HOH A 90 2790 47 HOH HOH . M 6 HOH A 91 2791 199 HOH HOH . M 6 HOH A 92 2792 173 HOH HOH . M 6 HOH A 93 2793 80 HOH HOH . M 6 HOH A 94 2794 119 HOH HOH . M 6 HOH A 95 2795 156 HOH HOH . M 6 HOH A 96 2796 154 HOH HOH . M 6 HOH A 97 2797 165 HOH HOH . M 6 HOH A 98 2798 188 HOH HOH . M 6 HOH A 99 2799 178 HOH HOH . M 6 HOH A 100 2800 70 HOH HOH . M 6 HOH A 101 2801 111 HOH HOH . M 6 HOH A 102 2802 162 HOH HOH . M 6 HOH A 103 2803 63 HOH HOH . M 6 HOH A 104 2804 90 HOH HOH . M 6 HOH A 105 2805 44 HOH HOH . M 6 HOH A 106 2806 100 HOH HOH . M 6 HOH A 107 2807 36 HOH HOH . M 6 HOH A 108 2808 108 HOH HOH . M 6 HOH A 109 2809 27 HOH HOH . M 6 HOH A 110 2810 140 HOH HOH . M 6 HOH A 111 2811 37 HOH HOH . M 6 HOH A 112 2812 163 HOH HOH . M 6 HOH A 113 2813 184 HOH HOH . M 6 HOH A 114 2814 143 HOH HOH . M 6 HOH A 115 2815 102 HOH HOH . M 6 HOH A 116 2816 124 HOH HOH . M 6 HOH A 117 2817 192 HOH HOH . M 6 HOH A 118 2818 79 HOH HOH . M 6 HOH A 119 2819 171 HOH HOH . M 6 HOH A 120 2820 190 HOH HOH . N 6 HOH B 1 2701 11 HOH HOH . N 6 HOH B 2 2702 183 HOH HOH . N 6 HOH B 3 2703 88 HOH HOH . N 6 HOH B 4 2704 118 HOH HOH . N 6 HOH B 5 2705 39 HOH HOH . N 6 HOH B 6 2706 128 HOH HOH . N 6 HOH B 7 2707 55 HOH HOH . N 6 HOH B 8 2708 40 HOH HOH . N 6 HOH B 9 2709 53 HOH HOH . N 6 HOH B 10 2710 82 HOH HOH . N 6 HOH B 11 2711 109 HOH HOH . N 6 HOH B 12 2712 137 HOH HOH . N 6 HOH B 13 2713 51 HOH HOH . N 6 HOH B 14 2714 46 HOH HOH . N 6 HOH B 15 2715 176 HOH HOH . N 6 HOH B 16 2716 73 HOH HOH . N 6 HOH B 17 2717 95 HOH HOH . N 6 HOH B 18 2718 62 HOH HOH . N 6 HOH B 19 2719 175 HOH HOH . N 6 HOH B 20 2720 202 HOH HOH . N 6 HOH B 21 2721 9 HOH HOH . N 6 HOH B 22 2722 34 HOH HOH . N 6 HOH B 23 2723 78 HOH HOH . N 6 HOH B 24 2724 167 HOH HOH . N 6 HOH B 25 2725 106 HOH HOH . N 6 HOH B 26 2726 149 HOH HOH . N 6 HOH B 27 2727 23 HOH HOH . N 6 HOH B 28 2728 105 HOH HOH . N 6 HOH B 29 2729 130 HOH HOH . N 6 HOH B 30 2730 134 HOH HOH . N 6 HOH B 31 2731 97 HOH HOH . N 6 HOH B 32 2732 10 HOH HOH . N 6 HOH B 33 2733 157 HOH HOH . N 6 HOH B 34 2734 131 HOH HOH . N 6 HOH B 35 2735 147 HOH HOH . N 6 HOH B 36 2736 57 HOH HOH . N 6 HOH B 37 2737 5 HOH HOH . N 6 HOH B 38 2738 6 HOH HOH . N 6 HOH B 39 2739 64 HOH HOH . N 6 HOH B 40 2740 58 HOH HOH . N 6 HOH B 41 2741 161 HOH HOH . N 6 HOH B 42 2742 94 HOH HOH . N 6 HOH B 43 2743 195 HOH HOH . N 6 HOH B 44 2744 170 HOH HOH . N 6 HOH B 45 2745 67 HOH HOH . N 6 HOH B 46 2746 113 HOH HOH . N 6 HOH B 47 2747 29 HOH HOH . N 6 HOH B 48 2748 2 HOH HOH . N 6 HOH B 49 2749 45 HOH HOH . N 6 HOH B 50 2750 194 HOH HOH . N 6 HOH B 51 2751 141 HOH HOH . N 6 HOH B 52 2752 86 HOH HOH . N 6 HOH B 53 2753 164 HOH HOH . N 6 HOH B 54 2754 83 HOH HOH . N 6 HOH B 55 2755 75 HOH HOH . N 6 HOH B 56 2756 85 HOH HOH . N 6 HOH B 57 2757 69 HOH HOH . N 6 HOH B 58 2758 122 HOH HOH . N 6 HOH B 59 2759 132 HOH HOH . N 6 HOH B 60 2760 138 HOH HOH . N 6 HOH B 61 2761 30 HOH HOH . N 6 HOH B 62 2762 26 HOH HOH . N 6 HOH B 63 2763 121 HOH HOH . N 6 HOH B 64 2764 198 HOH HOH . N 6 HOH B 65 2765 145 HOH HOH . N 6 HOH B 66 2766 203 HOH HOH . N 6 HOH B 67 2767 77 HOH HOH . N 6 HOH B 68 2768 160 HOH HOH . N 6 HOH B 69 2769 66 HOH HOH . N 6 HOH B 70 2770 146 HOH HOH . N 6 HOH B 71 2771 98 HOH HOH . N 6 HOH B 72 2772 191 HOH HOH . N 6 HOH B 73 2773 50 HOH HOH . N 6 HOH B 74 2774 152 HOH HOH . N 6 HOH B 75 2775 49 HOH HOH . N 6 HOH B 76 2776 59 HOH HOH . N 6 HOH B 77 2777 116 HOH HOH . N 6 HOH B 78 2778 179 HOH HOH . N 6 HOH B 79 2779 150 HOH HOH . N 6 HOH B 80 2780 144 HOH HOH . N 6 HOH B 81 2781 174 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 5 _atom_site.Cartn_x -2.212 _atom_site.Cartn_y 3.468 _atom_site.Cartn_z 87.635 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 2604 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #