data_7Y1K
#
_model_server_result.job_id            cOj-ELMQAVnEKa7IJqdODQ 
_model_server_result.datetime_utc      '2024-11-05 21:00:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y1k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1604}' 
#
_entry.id    7Y1K 
#
_exptl.entry_id    7Y1K 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              452.586 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Repaglinide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 708 A SER 708 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? 
metalc ? metalc2 A OE1 GLN 753 A GLN 753 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc3 A OE2 GLU 1470 A GLU 1470 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc4 B O1G ATP . A ATP 1601 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc5 B O3G ATP . A ATP 1601 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? 
metalc ? metalc6 B O2B ATP . A ATP 1601 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc7 B O3B ATP . A ATP 1601 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc8 D MG MG . A MG 1603 1_555 F O1B ADP . A ADP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc9 D MG MG . A MG 1603 1_555 F O2B ADP . A ADP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
#
_chem_comp.formula           'C27 H36 N2 O4' 
_chem_comp.formula_weight    452.586 
_chem_comp.id                BJX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Repaglinide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2-ethoxy-4-[2-({(1S)-3-methyl-1-[2-(piperidin-1-yl)phenyl]butyl}amino)-2-oxoethyl]benzoic acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C9 BJX sing 163 n n 
C12 C9 BJX sing 164 n n 
C9 C8 BJX sing 165 n n 
C8 C5 BJX sing 166 n n 
C11 C15 BJX doub 167 n y 
C11 C7 BJX sing 168 n y 
C5 C7 BJX sing 169 n n 
C5 N1 BJX sing 170 n n 
O C16 BJX doub 171 n n 
C15 C14 BJX sing 172 n y 
C7 C6 BJX doub 173 n y 
C26 C25 BJX sing 174 n n 
C25 O1 BJX sing 175 n n 
C16 N1 BJX sing 176 n n 
C16 C17 BJX sing 177 n n 
C N BJX sing 178 n n 
C C2 BJX sing 179 n n 
C14 C10 BJX doub 180 n y 
C6 C10 BJX sing 181 n y 
C6 N BJX sing 182 n n 
N C1 BJX sing 183 n n 
C2 C4 BJX sing 184 n n 
O1 C21 BJX sing 185 n n 
C19 C21 BJX doub 186 n y 
C19 C18 BJX sing 187 n y 
C17 C18 BJX sing 188 n n 
C21 C23 BJX sing 189 n y 
C18 C20 BJX doub 190 n y 
C4 C3 BJX sing 191 n n 
C1 C3 BJX sing 192 n n 
O2 C24 BJX doub 193 n n 
C20 C22 BJX sing 194 n y 
C23 C24 BJX sing 195 n n 
C23 C22 BJX doub 196 n y 
C24 O3 BJX sing 197 n n 
C9 H1 BJX sing 198 n n 
C10 H2 BJX sing 199 n n 
C11 H3 BJX sing 200 n n 
C12 H4 BJX sing 201 n n 
C12 H5 BJX sing 202 n n 
C12 H6 BJX sing 203 n n 
C13 H7 BJX sing 204 n n 
C13 H8 BJX sing 205 n n 
C13 H9 BJX sing 206 n n 
C14 H10 BJX sing 207 n n 
C15 H11 BJX sing 208 n n 
C17 H12 BJX sing 209 n n 
C17 H13 BJX sing 210 n n 
C19 H14 BJX sing 211 n n 
C20 H15 BJX sing 212 n n 
C8 H16 BJX sing 213 n n 
C8 H17 BJX sing 214 n n 
C5 H18 BJX sing 215 n n 
C4 H19 BJX sing 216 n n 
C4 H20 BJX sing 217 n n 
C3 H21 BJX sing 218 n n 
C3 H22 BJX sing 219 n n 
C2 H23 BJX sing 220 n n 
C2 H24 BJX sing 221 n n 
C1 H25 BJX sing 222 n n 
C1 H26 BJX sing 223 n n 
C H27 BJX sing 224 n n 
C H28 BJX sing 225 n n 
C22 H29 BJX sing 226 n n 
C25 H30 BJX sing 227 n n 
C25 H31 BJX sing 228 n n 
C26 H32 BJX sing 229 n n 
C26 H33 BJX sing 230 n n 
C26 H34 BJX sing 231 n n 
N1 H35 BJX sing 232 n n 
O3 H36 BJX sing 233 n n 
#
_atom_sites.entry_id                     7Y1K 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 1601 1602 ATP ATP . 
C 3 MG A 1 1602 1603 MG MG . 
D 3 MG A 1 1603 1606 MG MG . 
E 4 BJX A 1 1604 7005 BJX LIG . 
F 5 ADP A 1 1605 7006 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 BJX . . . E 4 133.804 142.286 142.504 1 48.67 ? C9 BJX 1604 A 1 
HETATM 2 C C10 BJX . . . E 4 135.946 140.928 137.482 1 48.67 ? C10 BJX 1604 A 1 
HETATM 3 C C11 BJX . . . E 4 136.374 142.993 139.247 1 48.67 ? C11 BJX 1604 A 1 
HETATM 4 C C12 BJX . . . E 4 134.02 141.027 143.338 1 48.67 ? C12 BJX 1604 A 1 
HETATM 5 C C13 BJX . . . E 4 135.032 143.184 142.623 1 48.67 ? C13 BJX 1604 A 1 
HETATM 6 C C14 BJX . . . E 4 137.195 141.513 137.564 1 48.67 ? C14 BJX 1604 A 1 
HETATM 7 C C15 BJX . . . E 4 137.41 142.55 138.45 1 48.67 ? C15 BJX 1604 A 1 
HETATM 8 C C16 BJX . . . E 4 132.944 144.855 138.845 1 48.67 ? C16 BJX 1604 A 1 
HETATM 9 C C17 BJX . . . E 4 131.793 145.416 138.017 1 48.67 ? C17 BJX 1604 A 1 
HETATM 10 C C18 BJX . . . E 4 130.937 144.251 137.561 1 48.67 ? C18 BJX 1604 A 1 
HETATM 11 C C19 BJX . . . E 4 131.095 143.741 136.293 1 48.67 ? C19 BJX 1604 A 1 
HETATM 12 C C20 BJX . . . E 4 130.008 143.704 138.414 1 48.67 ? C20 BJX 1604 A 1 
HETATM 13 C C8 BJX . . . E 4 133.554 141.884 141.053 1 48.67 ? C8 BJX 1604 A 1 
HETATM 14 C C7 BJX . . . E 4 135.124 142.409 139.167 1 48.67 ? C7 BJX 1604 A 1 
HETATM 15 C C6 BJX . . . E 4 134.904 141.367 138.279 1 48.67 ? C6 BJX 1604 A 1 
HETATM 16 C C5 BJX . . . E 4 134.035 142.959 140.08 1 48.67 ? C5 BJX 1604 A 1 
HETATM 17 C C4 BJX . . . E 4 132.861 138.467 136.466 1 48.67 ? C4 BJX 1604 A 1 
HETATM 18 C C3 BJX . . . E 4 133.814 138.248 137.619 1 48.67 ? C3 BJX 1604 A 1 
HETATM 19 C C2 BJX . . . E 4 133.23 139.785 135.815 1 48.67 ? C2 BJX 1604 A 1 
HETATM 20 C C1 BJX . . . E 4 133.675 139.355 138.652 1 48.67 ? C1 BJX 1604 A 1 
HETATM 21 O O1 BJX . . . E 4 130.516 142.181 134.571 1 48.67 ? O1 BJX 1604 A 1 
HETATM 22 O O2 BJX . . . E 4 127.377 141.146 135.832 1 48.67 ? O2 BJX 1604 A 1 
HETATM 23 N N BJX . . . E 4 133.611 140.724 138.155 1 48.67 ? N BJX 1604 A 1 
HETATM 24 C C BJX . . . E 4 133.087 140.938 136.811 1 48.67 ? C BJX 1604 A 1 
HETATM 25 O O BJX . . . E 4 133.859 145.553 139.122 1 48.67 ? O BJX 1604 A 1 
HETATM 26 C C21 BJX . . . E 4 130.318 142.684 135.863 1 48.67 ? C21 BJX 1604 A 1 
HETATM 27 C C22 BJX . . . E 4 129.237 142.639 137.995 1 48.67 ? C22 BJX 1604 A 1 
HETATM 28 C C23 BJX . . . E 4 129.392 142.126 136.725 1 48.67 ? C23 BJX 1604 A 1 
HETATM 29 C C24 BJX . . . E 4 128.526 140.951 136.3 1 48.67 ? C24 BJX 1604 A 1 
HETATM 30 C C25 BJX . . . E 4 129.516 142.383 133.61 1 48.67 ? C25 BJX 1604 A 1 
HETATM 31 C C26 BJX . . . E 4 128.876 143.756 133.747 1 48.67 ? C26 BJX 1604 A 1 
HETATM 32 N N1 BJX . . . E 4 132.932 143.472 139.288 1 48.67 ? N1 BJX 1604 A 1 
HETATM 33 O O3 BJX . . . E 4 128.974 139.785 136.407 1 48.67 ? O3 BJX 1604 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#