data_7Y1L # _model_server_result.job_id PJbgj_YnqFIts8bqxfxomA _model_server_result.datetime_utc '2024-11-05 19:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1605}' # _entry.id 7Y1L # _exptl.entry_id 7Y1L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.586 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repaglinide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y1L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 708 A SER 708 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A OE1 GLN 753 A GLN 753 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc3 A OG SER 1349 A SER 1349 1_555 B MG MG . A MG 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 B MG MG . A MG 1601 1_555 E O1A ATP . A ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc5 B MG MG . A MG 1601 1_555 E O2G ATP . A ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 B MG MG . A MG 1601 1_555 E O2B ATP . A ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc7 B MG MG . A MG 1601 1_555 E O3B ATP . A ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc8 B MG MG . A MG 1601 1_555 E O3G ATP . A ATP 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 C MG MG . A MG 1602 1_555 D O2B ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc10 C MG MG . A MG 1602 1_555 D O3B ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc11 C MG MG . A MG 1602 1_555 D O1A ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? metalc ? metalc12 C MG MG . A MG 1602 1_555 D O2G ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 C MG MG . A MG 1602 1_555 D O1G ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C27 H36 N2 O4' _chem_comp.formula_weight 452.586 _chem_comp.id BJX _chem_comp.mon_nstd_flag . _chem_comp.name Repaglinide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-ethoxy-4-[2-({(1S)-3-methyl-1-[2-(piperidin-1-yl)phenyl]butyl}amino)-2-oxoethyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C9 BJX sing 119 n n C12 C9 BJX sing 120 n n C9 C8 BJX sing 121 n n C8 C5 BJX sing 122 n n C11 C15 BJX doub 123 n y C11 C7 BJX sing 124 n y C5 C7 BJX sing 125 n n C5 N1 BJX sing 126 n n O C16 BJX doub 127 n n C15 C14 BJX sing 128 n y C7 C6 BJX doub 129 n y C26 C25 BJX sing 130 n n C25 O1 BJX sing 131 n n C16 N1 BJX sing 132 n n C16 C17 BJX sing 133 n n C N BJX sing 134 n n C C2 BJX sing 135 n n C14 C10 BJX doub 136 n y C6 C10 BJX sing 137 n y C6 N BJX sing 138 n n N C1 BJX sing 139 n n C2 C4 BJX sing 140 n n O1 C21 BJX sing 141 n n C19 C21 BJX doub 142 n y C19 C18 BJX sing 143 n y C17 C18 BJX sing 144 n n C21 C23 BJX sing 145 n y C18 C20 BJX doub 146 n y C4 C3 BJX sing 147 n n C1 C3 BJX sing 148 n n O2 C24 BJX doub 149 n n C20 C22 BJX sing 150 n y C23 C24 BJX sing 151 n n C23 C22 BJX doub 152 n y C24 O3 BJX sing 153 n n C9 H1 BJX sing 154 n n C10 H2 BJX sing 155 n n C11 H3 BJX sing 156 n n C12 H4 BJX sing 157 n n C12 H5 BJX sing 158 n n C12 H6 BJX sing 159 n n C13 H7 BJX sing 160 n n C13 H8 BJX sing 161 n n C13 H9 BJX sing 162 n n C14 H10 BJX sing 163 n n C15 H11 BJX sing 164 n n C17 H12 BJX sing 165 n n C17 H13 BJX sing 166 n n C19 H14 BJX sing 167 n n C20 H15 BJX sing 168 n n C8 H16 BJX sing 169 n n C8 H17 BJX sing 170 n n C5 H18 BJX sing 171 n n C4 H19 BJX sing 172 n n C4 H20 BJX sing 173 n n C3 H21 BJX sing 174 n n C3 H22 BJX sing 175 n n C2 H23 BJX sing 176 n n C2 H24 BJX sing 177 n n C1 H25 BJX sing 178 n n C1 H26 BJX sing 179 n n C H27 BJX sing 180 n n C H28 BJX sing 181 n n C22 H29 BJX sing 182 n n C25 H30 BJX sing 183 n n C25 H31 BJX sing 184 n n C26 H32 BJX sing 185 n n C26 H33 BJX sing 186 n n C26 H34 BJX sing 187 n n N1 H35 BJX sing 188 n n O3 H36 BJX sing 189 n n # _atom_sites.entry_id 7Y1L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1601 1 MG MG . C 2 MG A 1 1602 2 MG MG . D 3 ATP A 1 1603 1602 ATP ATP . E 3 ATP A 1 1604 1603 ATP ATP . F 4 BJX A 1 1605 1701 BJX LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 BJX . . . F 4 134.445 124.783 126.313 1 54.94 ? C9 BJX 1605 A 1 HETATM 2 C C10 BJX . . . F 4 137.541 126.829 130.588 1 54.94 ? C10 BJX 1605 A 1 HETATM 3 C C11 BJX . . . F 4 137.925 124.683 128.892 1 54.94 ? C11 BJX 1605 A 1 HETATM 4 C C12 BJX . . . F 4 135.744 124.825 125.512 1 54.94 ? C12 BJX 1605 A 1 HETATM 5 C C13 BJX . . . F 4 133.4 125.62 125.584 1 54.94 ? C13 BJX 1605 A 1 HETATM 6 C C14 BJX . . . F 4 138.82 126.404 130.295 1 54.94 ? C14 BJX 1605 A 1 HETATM 7 C C15 BJX . . . F 4 139.011 125.331 129.448 1 54.94 ? C15 BJX 1605 A 1 HETATM 8 C C16 BJX . . . F 4 134.282 122.421 129.621 1 54.94 ? C16 BJX 1605 A 1 HETATM 9 C C17 BJX . . . F 4 133.429 121.825 130.737 1 54.94 ? C17 BJX 1605 A 1 HETATM 10 C C18 BJX . . . F 4 132.399 122.839 131.217 1 54.94 ? C18 BJX 1605 A 1 HETATM 11 C C19 BJX . . . F 4 132.092 122.931 132.562 1 54.94 ? C19 BJX 1605 A 1 HETATM 12 C C20 BJX . . . F 4 131.768 123.667 130.309 1 54.94 ? C20 BJX 1605 A 1 HETATM 13 C C8 BJX . . . F 4 134.668 125.362 127.706 1 54.94 ? C8 BJX 1605 A 1 HETATM 14 C C7 BJX . . . F 4 136.646 125.109 129.185 1 54.94 ? C7 BJX 1605 A 1 HETATM 15 C C6 BJX . . . F 4 136.454 126.179 130.038 1 54.94 ? C6 BJX 1605 A 1 HETATM 16 C C5 BJX . . . F 4 135.463 124.38 128.563 1 54.94 ? C5 BJX 1605 A 1 HETATM 17 C C4 BJX . . . F 4 132.721 127.337 130.761 1 54.94 ? C4 BJX 1605 A 1 HETATM 18 C C3 BJX . . . F 4 133.487 128.424 130.018 1 54.94 ? C3 BJX 1605 A 1 HETATM 19 C C2 BJX . . . F 4 133.432 126.959 132.04 1 54.94 ? C2 BJX 1605 A 1 HETATM 20 C C1 BJX . . . F 4 134.956 128.007 129.849 1 54.94 ? C1 BJX 1605 A 1 HETATM 21 O O1 BJX . . . F 4 130.842 123.947 134.348 1 54.94 ? O1 BJX 1605 A 1 HETATM 22 O O2 BJX . . . F 4 129.33 125.908 133.776 1 54.94 ? O2 BJX 1605 A 1 HETATM 23 N N BJX . . . F 4 135.121 126.642 130.347 1 54.94 ? N BJX 1605 A 1 HETATM 24 C C BJX . . . F 4 134.884 126.651 131.774 1 54.94 ? C BJX 1605 A 1 HETATM 25 O O BJX . . . F 4 134.649 121.72 128.744 1 54.94 ? O BJX 1605 A 1 HETATM 26 C C21 BJX . . . F 4 131.157 123.852 132.993 1 54.94 ? C21 BJX 1605 A 1 HETATM 27 C C22 BJX . . . F 4 130.834 124.587 130.743 1 54.94 ? C22 BJX 1605 A 1 HETATM 28 C C23 BJX . . . F 4 130.532 124.679 132.085 1 54.94 ? C23 BJX 1605 A 1 HETATM 29 C C24 BJX . . . F 4 129.501 125.695 132.55 1 54.94 ? C24 BJX 1605 A 1 HETATM 30 C C25 BJX . . . F 4 131.692 124.783 135.071 1 54.94 ? C25 BJX 1605 A 1 HETATM 31 C C26 BJX . . . F 4 131.005 125.191 136.372 1 54.94 ? C26 BJX 1605 A 1 HETATM 32 N N1 BJX . . . F 4 134.646 123.828 129.628 1 54.94 ? N1 BJX 1605 A 1 HETATM 33 O O3 BJX . . . F 4 128.825 126.323 131.698 1 54.94 ? O3 BJX 1605 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #