data_7Y1M
#
_model_server_result.job_id            Nkwbm0laF_p-dCmDZc6hRw 
_model_server_result.datetime_utc      '2024-11-27 20:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y1m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1603}' 
#
_entry.id    7Y1M 
#
_exptl.entry_id    7Y1M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 708 A SER 708 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc2 A OE1 GLN 753 A GLN 753 1_555 C MG MG . A MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc3 B MG MG . A MG 1601 1_555 F O2B ADP . A ADP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc4 B MG MG . A MG 1601 1_555 F O1B ADP . A ADP 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc5 C MG MG . A MG 1602 1_555 D O3B ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? 
metalc ? metalc6 C MG MG . A MG 1602 1_555 D O1G ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc7 C MG MG . A MG 1602 1_555 D O2G ATP . A ATP 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7Y1M 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1601 1 MG MG . 
C 2 MG A 1 1602 2 MG MG . 
D 3 ATP A 1 1603 1602 ATP ATP . 
E 4 BJX A 1 1604 1604 BJX LIG . 
F 5 ADP A 1 1605 1701 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . D 3 127.016 148.361 184.748 1 84.08 ? PG ATP 1603 A 1 
HETATM 2 O O1G ATP . . . D 3 128.151 149.324 184.72 1 84.08 ? O1G ATP 1603 A 1 
HETATM 3 O O2G ATP . . . D 3 127.316 147.035 184.045 1 84.08 ? O2G ATP 1603 A 1 
HETATM 4 O O3G ATP . . . D 3 126.487 148.069 186.154 1 84.08 ? O3G ATP 1603 A 1 
HETATM 5 P PB ATP . . . D 3 124.191 149.089 184.128 1 84.08 ? PB ATP 1603 A 1 
HETATM 6 O O1B ATP . . . D 3 123.548 147.773 184.309 1 84.08 ? O1B ATP 1603 A 1 
HETATM 7 O O2B ATP . . . D 3 123.941 150.115 185.232 1 84.08 ? O2B ATP 1603 A 1 
HETATM 8 O O3B ATP . . . D 3 125.76 148.952 183.965 1 84.08 ? O3B ATP 1603 A 1 
HETATM 9 P PA ATP . . . D 3 124.145 151.093 181.96 1 84.08 ? PA ATP 1603 A 1 
HETATM 10 O O1A ATP . . . D 3 125.091 150.814 180.861 1 84.08 ? O1A ATP 1603 A 1 
HETATM 11 O O2A ATP . . . D 3 124.629 152.108 182.991 1 84.08 ? O2A ATP 1603 A 1 
HETATM 12 O O3A ATP . . . D 3 123.773 149.772 182.753 1 84.08 ? O3A ATP 1603 A 1 
HETATM 13 O O5' ATP . . . D 3 122.754 151.574 181.39 1 84.08 ? O5' ATP 1603 A 1 
HETATM 14 C C5' ATP . . . D 3 121.835 152.342 182.194 1 84.08 ? C5' ATP 1603 A 1 
HETATM 15 C C4' ATP . . . D 3 120.542 152.503 181.439 1 84.08 ? C4' ATP 1603 A 1 
HETATM 16 O O4' ATP . . . D 3 120.897 152.763 180.062 1 84.08 ? O4' ATP 1603 A 1 
HETATM 17 C C3' ATP . . . D 3 119.772 151.188 181.383 1 84.08 ? C3' ATP 1603 A 1 
HETATM 18 O O3' ATP . . . D 3 118.463 151.528 180.946 1 84.08 ? O3' ATP 1603 A 1 
HETATM 19 C C2' ATP . . . D 3 120.436 150.483 180.205 1 84.08 ? C2' ATP 1603 A 1 
HETATM 20 O O2' ATP . . . D 3 119.435 149.667 179.614 1 84.08 ? O2' ATP 1603 A 1 
HETATM 21 C C1' ATP . . . D 3 120.572 151.658 179.242 1 84.08 ? C1' ATP 1603 A 1 
HETATM 22 N N9 ATP . . . D 3 121.688 151.479 178.319 1 84.08 ? N9 ATP 1603 A 1 
HETATM 23 C C8 ATP . . . D 3 122.938 150.993 178.604 1 84.08 ? C8 ATP 1603 A 1 
HETATM 24 N N7 ATP . . . D 3 123.743 150.947 177.572 1 84.08 ? N7 ATP 1603 A 1 
HETATM 25 C C5 ATP . . . D 3 122.971 151.44 176.532 1 84.08 ? C5 ATP 1603 A 1 
HETATM 26 C C6 ATP . . . D 3 123.24 151.65 175.167 1 84.08 ? C6 ATP 1603 A 1 
HETATM 27 N N6 ATP . . . D 3 124.414 151.377 174.59 1 84.08 ? N6 ATP 1603 A 1 
HETATM 28 N N1 ATP . . . D 3 122.249 152.157 174.403 1 84.08 ? N1 ATP 1603 A 1 
HETATM 29 C C2 ATP . . . D 3 121.073 152.429 174.972 1 84.08 ? C2 ATP 1603 A 1 
HETATM 30 N N3 ATP . . . D 3 120.704 152.275 176.245 1 84.08 ? N3 ATP 1603 A 1 
HETATM 31 C C4 ATP . . . D 3 121.702 151.773 176.978 1 84.08 ? C4 ATP 1603 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           979 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           31 
#