data_7Y1N # _model_server_result.job_id Y6sbSQXxxOtQu7a34AHF8A _model_server_result.datetime_utc '2024-11-05 22:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3005}' # _entry.id 7Y1N # _exptl.entry_id 7Y1N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 452.586 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Repaglinide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y1N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 753 A GLN 753 1_555 D MG MG . A MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 B O1B ADP . A ADP 3001 1_555 C MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 D MG MG . A MG 3003 1_555 E O3G ATP . A ATP 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc4 D MG MG . A MG 3003 1_555 E O3B ATP . A ATP 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc5 D MG MG . A MG 3003 1_555 E O1G ATP . A ATP 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C27 H36 N2 O4' _chem_comp.formula_weight 452.586 _chem_comp.id BJX _chem_comp.mon_nstd_flag . _chem_comp.name Repaglinide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-ethoxy-4-[2-({(1S)-3-methyl-1-[2-(piperidin-1-yl)phenyl]butyl}amino)-2-oxoethyl]benzoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C9 BJX sing 163 n n C12 C9 BJX sing 164 n n C9 C8 BJX sing 165 n n C8 C5 BJX sing 166 n n C11 C15 BJX doub 167 n y C11 C7 BJX sing 168 n y C5 C7 BJX sing 169 n n C5 N1 BJX sing 170 n n O C16 BJX doub 171 n n C15 C14 BJX sing 172 n y C7 C6 BJX doub 173 n y C26 C25 BJX sing 174 n n C25 O1 BJX sing 175 n n C16 N1 BJX sing 176 n n C16 C17 BJX sing 177 n n C N BJX sing 178 n n C C2 BJX sing 179 n n C14 C10 BJX doub 180 n y C6 C10 BJX sing 181 n y C6 N BJX sing 182 n n N C1 BJX sing 183 n n C2 C4 BJX sing 184 n n O1 C21 BJX sing 185 n n C19 C21 BJX doub 186 n y C19 C18 BJX sing 187 n y C17 C18 BJX sing 188 n n C21 C23 BJX sing 189 n y C18 C20 BJX doub 190 n y C4 C3 BJX sing 191 n n C1 C3 BJX sing 192 n n O2 C24 BJX doub 193 n n C20 C22 BJX sing 194 n y C23 C24 BJX sing 195 n n C23 C22 BJX doub 196 n y C24 O3 BJX sing 197 n n C9 H1 BJX sing 198 n n C10 H2 BJX sing 199 n n C11 H3 BJX sing 200 n n C12 H4 BJX sing 201 n n C12 H5 BJX sing 202 n n C12 H6 BJX sing 203 n n C13 H7 BJX sing 204 n n C13 H8 BJX sing 205 n n C13 H9 BJX sing 206 n n C14 H10 BJX sing 207 n n C15 H11 BJX sing 208 n n C17 H12 BJX sing 209 n n C17 H13 BJX sing 210 n n C19 H14 BJX sing 211 n n C20 H15 BJX sing 212 n n C8 H16 BJX sing 213 n n C8 H17 BJX sing 214 n n C5 H18 BJX sing 215 n n C4 H19 BJX sing 216 n n C4 H20 BJX sing 217 n n C3 H21 BJX sing 218 n n C3 H22 BJX sing 219 n n C2 H23 BJX sing 220 n n C2 H24 BJX sing 221 n n C1 H25 BJX sing 222 n n C1 H26 BJX sing 223 n n C H27 BJX sing 224 n n C H28 BJX sing 225 n n C22 H29 BJX sing 226 n n C25 H30 BJX sing 227 n n C25 H31 BJX sing 228 n n C26 H32 BJX sing 229 n n C26 H33 BJX sing 230 n n C26 H34 BJX sing 231 n n N1 H35 BJX sing 232 n n O3 H36 BJX sing 233 n n # _atom_sites.entry_id 7Y1N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 3001 3001 ADP ADP . C 3 MG A 1 3002 3003 MG MG . D 3 MG A 1 3003 4002 MG MG . E 4 ATP A 1 3004 3004 ATP ATP . F 5 BJX A 1 3005 7005 BJX LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 BJX . . . F 5 135.287 143.434 140.587 1 37.86 ? C9 BJX 3005 A 1 HETATM 2 C C10 BJX . . . F 5 137.584 141.305 135.816 1 37.86 ? C10 BJX 3005 A 1 HETATM 3 C C11 BJX . . . F 5 138.163 143.49 137.377 1 37.86 ? C11 BJX 3005 A 1 HETATM 4 C C12 BJX . . . F 5 134.522 142.535 141.552 1 37.86 ? C12 BJX 3005 A 1 HETATM 5 C C13 BJX . . . F 5 136.725 143.568 141.078 1 37.86 ? C13 BJX 3005 A 1 HETATM 6 C C14 BJX . . . F 5 138.875 141.784 135.873 1 37.86 ? C14 BJX 3005 A 1 HETATM 7 C C15 BJX . . . F 5 139.166 142.878 136.652 1 37.86 ? C15 BJX 3005 A 1 HETATM 8 C C16 BJX . . . F 5 134.418 145.669 137.311 1 37.86 ? C16 BJX 3005 A 1 HETATM 9 C C17 BJX . . . F 5 133.297 146.184 136.411 1 37.86 ? C17 BJX 3005 A 1 HETATM 10 C C18 BJX . . . F 5 132.321 145.034 136.248 1 37.86 ? C18 BJX 3005 A 1 HETATM 11 C C19 BJX . . . F 5 132.014 144.523 135.004 1 37.86 ? C19 BJX 3005 A 1 HETATM 12 C C20 BJX . . . F 5 131.761 144.487 137.383 1 37.86 ? C20 BJX 3005 A 1 HETATM 13 C C8 BJX . . . F 5 135.265 142.795 139.204 1 37.86 ? C8 BJX 3005 A 1 HETATM 14 C C7 BJX . . . F 5 136.866 143.016 137.324 1 37.86 ? C7 BJX 3005 A 1 HETATM 15 C C6 BJX . . . F 5 136.565 141.909 136.536 1 37.86 ? C6 BJX 3005 A 1 HETATM 16 C C5 BJX . . . F 5 135.824 143.754 138.16 1 37.86 ? C5 BJX 3005 A 1 HETATM 17 C C4 BJX . . . F 5 133.056 139.647 135.991 1 37.86 ? C4 BJX 3005 A 1 HETATM 18 C C3 BJX . . . F 5 134.294 139.045 136.639 1 37.86 ? C3 BJX 3005 A 1 HETATM 19 C C2 BJX . . . F 5 133.451 140.655 134.944 1 37.86 ? C2 BJX 3005 A 1 HETATM 20 C C1 BJX . . . F 5 135.125 140.166 137.294 1 37.86 ? C1 BJX 3005 A 1 HETATM 21 O O1 BJX . . . F 5 130.832 142.957 133.625 1 37.86 ? O1 BJX 3005 A 1 HETATM 22 O O2 BJX . . . F 5 128.38 141.953 136.217 1 37.86 ? O2 BJX 3005 A 1 HETATM 23 N N BJX . . . F 5 135.221 141.36 136.446 1 37.86 ? N BJX 3005 A 1 HETATM 24 C C BJX . . . F 5 134.904 141.032 135.064 1 37.86 ? C BJX 3005 A 1 HETATM 25 O O BJX . . . F 5 134.998 146.426 138.013 1 37.86 ? O BJX 3005 A 1 HETATM 26 C C21 BJX . . . F 5 131.122 143.473 134.893 1 37.86 ? C21 BJX 3005 A 1 HETATM 27 C C22 BJX . . . F 5 130.88 143.433 137.278 1 37.86 ? C22 BJX 3005 A 1 HETATM 28 C C23 BJX . . . F 5 130.567 142.924 136.036 1 37.86 ? C23 BJX 3005 A 1 HETATM 29 C C24 BJX . . . F 5 129.593 141.763 135.964 1 37.86 ? C24 BJX 3005 A 1 HETATM 30 C C25 BJX . . . F 5 129.536 143.123 133.133 1 37.86 ? C25 BJX 3005 A 1 HETATM 31 C C26 BJX . . . F 5 129.574 142.961 131.616 1 37.86 ? C26 BJX 3005 A 1 HETATM 32 N N1 BJX . . . F 5 134.764 144.254 137.309 1 37.86 ? N1 BJX 3005 A 1 HETATM 33 O O3 BJX . . . F 5 130.006 140.619 135.654 1 37.86 ? O3 BJX 3005 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #