data_7Y1P
#
_model_server_result.job_id            KTfInNRDxjG2FeQCg92aoQ 
_model_server_result.datetime_utc      '2024-10-11 00:24:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y1p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    7Y1P 
#
_exptl.entry_id    7Y1P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.302 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{Z},4~{Z})-2-methyl-5-(8-oxidanyldibenzofuran-4-yl)penta-2,4-dienal 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Y1P 
_cell.length_a            155.343 
_cell.length_b            155.343 
_cell.length_c            107.061 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y1P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A 1 1 
B,E 2 1 
C 3 1 
D 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H14 O3' 
_chem_comp.formula_weight    278.302 
_chem_comp.id                I5L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{Z},4~{Z})-2-methyl-5-(8-oxidanyldibenzofuran-4-yl)penta-2,4-dienal 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C11 I5L doub 150 n y 
C12 C13 I5L sing 151 n y 
C18 C17 I5L sing 152 n n 
C11 C10 I5L sing 153 n y 
C13 C09 I5L doub 154 n y 
C17 C16 I5L doub 155 z n 
C17 C20 I5L sing 156 n n 
C16 C15 I5L sing 157 n n 
C10 C14 I5L sing 158 n n 
C10 C08 I5L doub 159 n y 
C09 C08 I5L sing 160 n y 
C09 C05 I5L sing 161 n y 
O21 C20 I5L doub 162 n n 
C15 C14 I5L doub 163 z n 
C08 O07 I5L sing 164 n y 
C06 C05 I5L doub 165 n y 
C06 C01 I5L sing 166 n y 
C05 C04 I5L sing 167 n y 
O07 C04 I5L sing 168 n y 
C04 C03 I5L doub 169 n y 
C01 O19 I5L sing 170 n n 
C01 C02 I5L doub 171 n y 
C02 C03 I5L sing 172 n y 
C13 H1 I5L sing 173 n n 
C15 H2 I5L sing 174 n n 
C20 H3 I5L sing 175 n n 
C02 H4 I5L sing 176 n n 
C03 H5 I5L sing 177 n n 
C06 H6 I5L sing 178 n n 
C11 H7 I5L sing 179 n n 
C12 H8 I5L sing 180 n n 
C14 H9 I5L sing 181 n n 
C16 H10 I5L sing 182 n n 
C18 H11 I5L sing 183 n n 
C18 H12 I5L sing 184 n n 
C18 H13 I5L sing 185 n n 
O19 H14 I5L sing 186 n n 
#
_atom_sites.entry_id                     7Y1P 
_atom_sites.fract_transf_matrix[1][1]    0.006437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          E 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           I5L 
_pdbx_nonpoly_scheme.pdb_strand_id    B 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      301 
_pdbx_nonpoly_scheme.auth_seq_num     5 
_pdbx_nonpoly_scheme.pdb_mon_id       I5L 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 I5L . . . E 2 -51.029 22.15 -47.657 1 93.01 ? C10 I5L 301 B 1 
HETATM 2 C C13 I5L . . . E 2 -53.811 22.618 -48.831 1 84.51 ? C13 I5L 301 B 1 
HETATM 3 C C15 I5L . . . E 2 -48.601 22.812 -47.283 1 88.12 ? C15 I5L 301 B 1 
HETATM 4 C C17 I5L . . . E 2 -48.085 25.065 -48.386 1 91.26 ? C17 I5L 301 B 1 
HETATM 5 C C20 I5L . . . E 2 -47.042 25.348 -47.271 1 79.9 ? C20 I5L 301 B 1 
HETATM 6 C C01 I5L . . . E 2 -55.774 25.744 -45.51 1 66.71 ? C01 I5L 301 B 1 
HETATM 7 C C02 I5L . . . E 2 -54.784 26.049 -44.385 1 68.01 ? C02 I5L 301 B 1 
HETATM 8 C C03 I5L . . . E 2 -53.448 25.455 -44.371 1 56.9 ? C03 I5L 301 B 1 
HETATM 9 C C04 I5L . . . E 2 -53.08 24.494 -45.551 1 75.37 ? C04 I5L 301 B 1 
HETATM 10 C C05 I5L . . . E 2 -53.984 24.193 -46.61 1 82.22 ? C05 I5L 301 B 1 
HETATM 11 C C06 I5L . . . E 2 -55.407 24.819 -46.634 1 72.68 ? C06 I5L 301 B 1 
HETATM 12 C C08 I5L . . . E 2 -52.047 23.092 -46.946 1 93.99 ? C08 I5L 301 B 1 
HETATM 13 C C09 I5L . . . E 2 -53.355 23.323 -47.484 1 88.96 ? C09 I5L 301 B 1 
HETATM 14 C C11 I5L . . . E 2 -51.437 21.467 -48.953 1 98.08 ? C11 I5L 301 B 1 
HETATM 15 C C12 I5L . . . E 2 -52.836 21.706 -49.536 1 91.87 ? C12 I5L 301 B 1 
HETATM 16 C C14 I5L . . . E 2 -49.608 21.982 -46.954 1 88.89 ? C14 I5L 301 B 1 
HETATM 17 C C16 I5L . . . E 2 -48.81 23.897 -48.381 1 90 ? C16 I5L 301 B 1 
HETATM 18 C C18 I5L . . . E 2 -48.325 26.075 -49.494 1 86.69 ? C18 I5L 301 B 1 
HETATM 19 O O07 I5L . . . E 2 -51.892 23.804 -45.775 1 92.29 ? O07 I5L 301 B 1 
HETATM 20 O O19 I5L . . . E 2 -57.045 26.338 -45.489 1 54.02 ? O19 I5L 301 B 1 
HETATM 21 O O21 I5L . . . E 2 -45.88 25.006 -47.406 1 86.82 ? O21 I5L 301 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#