data_7Y1U # _model_server_result.job_id 73qBcCYrmLAmxinc5sE5yA _model_server_result.datetime_utc '2024-12-22 11:16:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7Y1U # _exptl.entry_id 7Y1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y1U _cell.length_a 62.501 _cell.length_b 92.694 _cell.length_c 147.321 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 7Y1U _atom_sites.fract_transf_matrix[1][1] 0.016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006788 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 801 730 NAP NAP . C 3 MN A 1 802 731 MN MN . D 4 SO4 A 1 803 736 SO4 SO4 . E 4 SO4 A 1 804 737 SO4 SO4 . F 4 SO4 A 1 805 738 SO4 SO4 . G 4 SO4 A 1 806 739 SO4 SO4 . H 4 SO4 A 1 807 740 SO4 SO4 . I 5 PG4 A 1 808 747 PG4 PG4 . J 5 PG4 A 1 809 748 PG4 PG4 . K 6 EDO A 1 810 749 EDO EDO . L 6 EDO A 1 811 750 EDO EDO . M 6 EDO A 1 812 751 EDO EDO . N 7 HOH A 1 901 77 HOH HOH . N 7 HOH A 2 902 20 HOH HOH . N 7 HOH A 3 903 66 HOH HOH . N 7 HOH A 4 904 15 HOH HOH . N 7 HOH A 5 905 40 HOH HOH . N 7 HOH A 6 906 143 HOH HOH . N 7 HOH A 7 907 43 HOH HOH . N 7 HOH A 8 908 5 HOH HOH . N 7 HOH A 9 909 9 HOH HOH . N 7 HOH A 10 910 39 HOH HOH . N 7 HOH A 11 911 80 HOH HOH . N 7 HOH A 12 912 38 HOH HOH . N 7 HOH A 13 913 76 HOH HOH . N 7 HOH A 14 914 42 HOH HOH . N 7 HOH A 15 915 52 HOH HOH . N 7 HOH A 16 916 79 HOH HOH . N 7 HOH A 17 917 62 HOH HOH . N 7 HOH A 18 918 115 HOH HOH . N 7 HOH A 19 919 50 HOH HOH . N 7 HOH A 20 920 85 HOH HOH . N 7 HOH A 21 921 138 HOH HOH . N 7 HOH A 22 922 30 HOH HOH . N 7 HOH A 23 923 12 HOH HOH . N 7 HOH A 24 924 2 HOH HOH . N 7 HOH A 25 925 32 HOH HOH . N 7 HOH A 26 926 26 HOH HOH . N 7 HOH A 27 927 84 HOH HOH . N 7 HOH A 28 928 19 HOH HOH . N 7 HOH A 29 929 11 HOH HOH . N 7 HOH A 30 930 97 HOH HOH . N 7 HOH A 31 931 8 HOH HOH . N 7 HOH A 32 932 61 HOH HOH . N 7 HOH A 33 933 68 HOH HOH . N 7 HOH A 34 934 112 HOH HOH . N 7 HOH A 35 935 139 HOH HOH . N 7 HOH A 36 936 113 HOH HOH . N 7 HOH A 37 937 144 HOH HOH . N 7 HOH A 38 938 107 HOH HOH . N 7 HOH A 39 939 142 HOH HOH . N 7 HOH A 40 940 18 HOH HOH . N 7 HOH A 41 941 141 HOH HOH . N 7 HOH A 42 942 109 HOH HOH . N 7 HOH A 43 943 140 HOH HOH . N 7 HOH A 44 944 96 HOH HOH . N 7 HOH A 45 945 7 HOH HOH . N 7 HOH A 46 946 123 HOH HOH . N 7 HOH A 47 947 25 HOH HOH . N 7 HOH A 48 948 1 HOH HOH . N 7 HOH A 49 949 54 HOH HOH . N 7 HOH A 50 950 16 HOH HOH . N 7 HOH A 51 951 24 HOH HOH . N 7 HOH A 52 952 71 HOH HOH . N 7 HOH A 53 953 102 HOH HOH . N 7 HOH A 54 954 22 HOH HOH . N 7 HOH A 55 955 127 HOH HOH . N 7 HOH A 56 956 108 HOH HOH . N 7 HOH A 57 957 63 HOH HOH . N 7 HOH A 58 958 3 HOH HOH . N 7 HOH A 59 959 87 HOH HOH . N 7 HOH A 60 960 51 HOH HOH . N 7 HOH A 61 961 55 HOH HOH . N 7 HOH A 62 962 74 HOH HOH . N 7 HOH A 63 963 114 HOH HOH . N 7 HOH A 64 964 99 HOH HOH . N 7 HOH A 65 965 46 HOH HOH . N 7 HOH A 66 966 98 HOH HOH . N 7 HOH A 67 967 34 HOH HOH . N 7 HOH A 68 968 35 HOH HOH . N 7 HOH A 69 969 56 HOH HOH . N 7 HOH A 70 970 58 HOH HOH . N 7 HOH A 71 971 37 HOH HOH . N 7 HOH A 72 972 78 HOH HOH . N 7 HOH A 73 973 53 HOH HOH . N 7 HOH A 74 974 14 HOH HOH . N 7 HOH A 75 975 132 HOH HOH . N 7 HOH A 76 976 27 HOH HOH . N 7 HOH A 77 977 111 HOH HOH . N 7 HOH A 78 978 29 HOH HOH . N 7 HOH A 79 979 67 HOH HOH . N 7 HOH A 80 980 92 HOH HOH . N 7 HOH A 81 981 73 HOH HOH . N 7 HOH A 82 982 64 HOH HOH . N 7 HOH A 83 983 21 HOH HOH . N 7 HOH A 84 984 31 HOH HOH . N 7 HOH A 85 985 106 HOH HOH . N 7 HOH A 86 986 6 HOH HOH . N 7 HOH A 87 987 83 HOH HOH . N 7 HOH A 88 988 91 HOH HOH . N 7 HOH A 89 989 13 HOH HOH . N 7 HOH A 90 990 45 HOH HOH . N 7 HOH A 91 991 47 HOH HOH . N 7 HOH A 92 992 121 HOH HOH . N 7 HOH A 93 993 90 HOH HOH . N 7 HOH A 94 994 89 HOH HOH . N 7 HOH A 95 995 70 HOH HOH . N 7 HOH A 96 996 44 HOH HOH . N 7 HOH A 97 997 94 HOH HOH . N 7 HOH A 98 998 69 HOH HOH . N 7 HOH A 99 999 120 HOH HOH . N 7 HOH A 100 1000 23 HOH HOH . N 7 HOH A 101 1001 86 HOH HOH . N 7 HOH A 102 1002 72 HOH HOH . N 7 HOH A 103 1003 131 HOH HOH . N 7 HOH A 104 1004 59 HOH HOH . N 7 HOH A 105 1005 57 HOH HOH . N 7 HOH A 106 1006 49 HOH HOH . N 7 HOH A 107 1007 95 HOH HOH . N 7 HOH A 108 1008 4 HOH HOH . N 7 HOH A 109 1009 75 HOH HOH . N 7 HOH A 110 1010 117 HOH HOH . N 7 HOH A 111 1011 33 HOH HOH . N 7 HOH A 112 1012 88 HOH HOH . N 7 HOH A 113 1013 125 HOH HOH . N 7 HOH A 114 1014 137 HOH HOH . N 7 HOH A 115 1015 17 HOH HOH . N 7 HOH A 116 1016 105 HOH HOH . N 7 HOH A 117 1017 65 HOH HOH . N 7 HOH A 118 1018 145 HOH HOH . N 7 HOH A 119 1019 36 HOH HOH . N 7 HOH A 120 1020 60 HOH HOH . N 7 HOH A 121 1021 130 HOH HOH . N 7 HOH A 122 1022 147 HOH HOH . N 7 HOH A 123 1023 100 HOH HOH . N 7 HOH A 124 1024 118 HOH HOH . N 7 HOH A 125 1025 48 HOH HOH . N 7 HOH A 126 1026 122 HOH HOH . N 7 HOH A 127 1027 133 HOH HOH . N 7 HOH A 128 1028 110 HOH HOH . N 7 HOH A 129 1029 101 HOH HOH . N 7 HOH A 130 1030 116 HOH HOH . N 7 HOH A 131 1031 124 HOH HOH . N 7 HOH A 132 1032 128 HOH HOH . N 7 HOH A 133 1033 136 HOH HOH . N 7 HOH A 134 1034 81 HOH HOH . N 7 HOH A 135 1035 119 HOH HOH . N 7 HOH A 136 1036 146 HOH HOH . N 7 HOH A 137 1037 10 HOH HOH . N 7 HOH A 138 1038 28 HOH HOH . N 7 HOH A 139 1039 103 HOH HOH . N 7 HOH A 140 1040 149 HOH HOH . N 7 HOH A 141 1041 129 HOH HOH . N 7 HOH A 142 1042 134 HOH HOH . N 7 HOH A 143 1043 126 HOH HOH . N 7 HOH A 144 1044 82 HOH HOH . N 7 HOH A 145 1045 104 HOH HOH . N 7 HOH A 146 1046 93 HOH HOH . N 7 HOH A 147 1047 41 HOH HOH . N 7 HOH A 148 1048 135 HOH HOH . N 7 HOH A 149 1049 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -19.19 6.703 -19.978 1 32.7 ? PA NAP 801 A 1 HETATM 2 O O1A NAP . . . B 2 -18.323 7.663 -20.803 1 39.61 ? O1A NAP 801 A 1 HETATM 3 O O2A NAP . . . B 2 -19.322 7.319 -18.608 1 37.34 -1 O2A NAP 801 A 1 HETATM 4 O O5B NAP . . . B 2 -20.638 6.23 -20.45 1 40.52 ? O5B NAP 801 A 1 HETATM 5 C C5B NAP . . . B 2 -21.204 7.151 -21.253 1 41.7 ? C5B NAP 801 A 1 HETATM 6 C C4B NAP . . . B 2 -22.74 7.093 -21.221 1 36.3 ? C4B NAP 801 A 1 HETATM 7 O O4B NAP . . . B 2 -23.244 7.605 -19.86 1 37.43 ? O4B NAP 801 A 1 HETATM 8 C C3B NAP . . . B 2 -22.938 8.008 -22.141 1 37.26 ? C3B NAP 801 A 1 HETATM 9 O O3B NAP . . . B 2 -23.229 7.294 -23.444 1 37.52 ? O3B NAP 801 A 1 HETATM 10 C C2B NAP . . . B 2 -24.059 8.961 -21.496 1 35.66 ? C2B NAP 801 A 1 HETATM 11 O O2B NAP . . . B 2 -25.204 8.229 -21.849 1 39.48 ? O2B NAP 801 A 1 HETATM 12 C C1B NAP . . . B 2 -23.922 8.952 -20.182 1 35.95 ? C1B NAP 801 A 1 HETATM 13 N N9A NAP . . . B 2 -22.969 10.063 -19.812 1 38.08 ? N9A NAP 801 A 1 HETATM 14 C C8A NAP . . . B 2 -21.703 9.967 -19.366 1 36.69 ? C8A NAP 801 A 1 HETATM 15 N N7A NAP . . . B 2 -21.198 11.217 -19.211 1 34.58 ? N7A NAP 801 A 1 HETATM 16 C C5A NAP . . . B 2 -22.161 12.081 -19.569 1 38.08 ? C5A NAP 801 A 1 HETATM 17 C C6A NAP . . . B 2 -22.221 13.601 -19.61 1 37.37 ? C6A NAP 801 A 1 HETATM 18 N N6A NAP . . . B 2 -21.055 14.454 -19.202 1 33.82 ? N6A NAP 801 A 1 HETATM 19 N N1A NAP . . . B 2 -23.461 14.217 -20.024 1 39.74 ? N1A NAP 801 A 1 HETATM 20 C C2A NAP . . . B 2 -24.585 13.447 -20.408 1 35.61 ? C2A NAP 801 A 1 HETATM 21 N N3A NAP . . . B 2 -24.521 12.026 -20.369 1 32.47 ? N3A NAP 801 A 1 HETATM 22 C C4A NAP . . . B 2 -23.255 11.369 -19.936 1 36.94 ? C4A NAP 801 A 1 HETATM 23 O O3 NAP . . . B 2 -18.681 5.223 -19.608 1 34.69 ? O3 NAP 801 A 1 HETATM 24 P PN NAP . . . B 2 -17.734 4.106 -20.313 1 33.86 ? PN NAP 801 A 1 HETATM 25 O O1N NAP . . . B 2 -18.151 3.605 -21.653 1 39.28 ? O1N NAP 801 A 1 HETATM 26 O O2N NAP . . . B 2 -17.643 3.139 -19.13 1 42.62 -1 O2N NAP 801 A 1 HETATM 27 O O5D NAP . . . B 2 -16.195 4.752 -20.359 1 32.91 ? O5D NAP 801 A 1 HETATM 28 C C5D NAP . . . B 2 -15.927 5.497 -21.527 1 30.08 ? C5D NAP 801 A 1 HETATM 29 C C4D NAP . . . B 2 -14.493 5.999 -21.418 1 29.77 ? C4D NAP 801 A 1 HETATM 30 O O4D NAP . . . B 2 -14.411 6.743 -20.411 1 29.96 ? O4D NAP 801 A 1 HETATM 31 C C3D NAP . . . B 2 -13.423 4.76 -21.236 1 27.29 ? C3D NAP 801 A 1 HETATM 32 O O3D NAP . . . B 2 -12.363 5.124 -22.088 1 22.83 ? O3D NAP 801 A 1 HETATM 33 C C2D NAP . . . B 2 -13.125 4.725 -19.957 1 27.49 ? C2D NAP 801 A 1 HETATM 34 O O2D NAP . . . B 2 -11.744 4.211 -19.687 1 26.1 ? O2D NAP 801 A 1 HETATM 35 C C1D NAP . . . B 2 -13.253 6.183 -19.539 1 29.6 ? C1D NAP 801 A 1 HETATM 36 N N1N NAP . . . B 2 -13.593 6.449 -18.248 1 29.39 ? N1N NAP 801 A 1 HETATM 37 C C2N NAP . . . B 2 -12.819 7.455 -17.518 1 28.09 ? C2N NAP 801 A 1 HETATM 38 C C3N NAP . . . B 2 -13.154 7.839 -16.093 1 27 ? C3N NAP 801 A 1 HETATM 39 C C7N NAP . . . B 2 -12.348 8.869 -15.368 1 27.16 ? C7N NAP 801 A 1 HETATM 40 O O7N NAP . . . B 2 -12.644 9.313 -14.319 1 34.39 ? O7N NAP 801 A 1 HETATM 41 N N7N NAP . . . B 2 -11.18 9.274 -16.061 1 27.86 ? N7N NAP 801 A 1 HETATM 42 C C4N NAP . . . B 2 -14.288 7.25 -15.416 1 28.37 ? C4N NAP 801 A 1 HETATM 43 C C5N NAP . . . B 2 -15.054 6.231 -16.179 1 29.45 ? C5N NAP 801 A 1 HETATM 44 C C6N NAP . . . B 2 -14.716 5.817 -17.577 1 27.95 ? C6N NAP 801 A 1 HETATM 45 P P2B NAP . . . B 2 -25.995 8.394 -23.262 1 35.24 ? P2B NAP 801 A 1 HETATM 46 O O1X NAP . . . B 2 -25.407 7.594 -24.369 1 36.39 ? O1X NAP 801 A 1 HETATM 47 O O2X NAP . . . B 2 -27.322 7.834 -22.849 1 37.8 -1 O2X NAP 801 A 1 HETATM 48 O O3X NAP . . . B 2 -26.084 9.819 -23.665 1 34.26 -1 O3X NAP 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #