data_7Y1W # _model_server_result.job_id WRjMa-5GamUZYcyiP50WTQ _model_server_result.datetime_utc '2025-07-31 00:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1603}' # _entry.id 7Y1W # _exptl.entry_id 7Y1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.77 _cell.angle_gamma 90 _cell.entry_id 7Y1W _cell.length_a 71.556 _cell.length_b 92.147 _cell.length_c 86.728 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 223 A GLN 1237 1_555 G MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A SG CYS 434 A CYS 1448 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 439 A CYS 1453 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 481 A CYS 1495 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 E O3G ATP . A ATP 1603 1_555 F MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc6 E O2B ATP . A ATP 1603 1_555 F MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 E O2G ATP . A ATP 1603 1_555 G MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 B SG CYS 434 B CYS 1448 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 B SG CYS 439 B CYS 1453 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 B SG CYS 481 B CYS 1495 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7Y1W _atom_sites.fract_transf_matrix[1][1] 0.013975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1601 2604 ZN ZN . D 3 F9O A 1 1602 1 F9O DWN . E 4 ATP A 1 1603 1 ATP ATP . F 5 MG A 1 1604 1 MG MG . G 5 MG A 1 1605 3 MG MG . H 2 ZN B 1 1601 2604 ZN ZN . I 3 F9O B 1 1602 2 F9O DWN . J 6 HOH A 1 1701 11 HOH HOH . J 6 HOH A 2 1702 8 HOH HOH . J 6 HOH A 3 1703 6 HOH HOH . J 6 HOH A 4 1704 22 HOH HOH . J 6 HOH A 5 1705 16 HOH HOH . J 6 HOH A 6 1706 32 HOH HOH . J 6 HOH A 7 1707 14 HOH HOH . J 6 HOH A 8 1708 12 HOH HOH . J 6 HOH A 9 1709 2 HOH HOH . J 6 HOH A 10 1710 35 HOH HOH . J 6 HOH A 11 1711 25 HOH HOH . J 6 HOH A 12 1712 4 HOH HOH . J 6 HOH A 13 1713 7 HOH HOH . J 6 HOH A 14 1714 28 HOH HOH . J 6 HOH A 15 1715 34 HOH HOH . J 6 HOH A 16 1716 13 HOH HOH . J 6 HOH A 17 1717 15 HOH HOH . J 6 HOH A 18 1718 19 HOH HOH . J 6 HOH A 19 1719 3 HOH HOH . J 6 HOH A 20 1720 20 HOH HOH . J 6 HOH A 21 1721 10 HOH HOH . J 6 HOH A 22 1722 24 HOH HOH . J 6 HOH A 23 1723 23 HOH HOH . J 6 HOH A 24 1724 1 HOH HOH . J 6 HOH A 25 1725 37 HOH HOH . J 6 HOH A 26 1726 36 HOH HOH . J 6 HOH A 27 1727 21 HOH HOH . K 6 HOH B 1 1701 29 HOH HOH . K 6 HOH B 2 1702 5 HOH HOH . K 6 HOH B 3 1703 31 HOH HOH . K 6 HOH B 4 1704 27 HOH HOH . K 6 HOH B 5 1705 18 HOH HOH . K 6 HOH B 6 1706 30 HOH HOH . K 6 HOH B 7 1707 26 HOH HOH . K 6 HOH B 8 1708 17 HOH HOH . K 6 HOH B 9 1709 9 HOH HOH . K 6 HOH B 10 1710 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 4 43.74 21.559 112.159 1 120.48 ? PG ATP 1603 A 1 HETATM 2 O O1G ATP . . . E 4 44.533 21.073 113.323 1 109.56 ? O1G ATP 1603 A 1 HETATM 3 O O2G ATP . . . E 4 42.272 21.846 112.484 1 171.52 ? O2G ATP 1603 A 1 HETATM 4 O O3G ATP . . . E 4 44.295 22.812 111.495 1 113.29 ? O3G ATP 1603 A 1 HETATM 5 P PB ATP . . . E 4 42.811 20.07 109.81 1 97.41 ? PB ATP 1603 A 1 HETATM 6 O O1B ATP . . . E 4 41.434 19.91 110.311 1 107.83 ? O1B ATP 1603 A 1 HETATM 7 O O2B ATP . . . E 4 43.07 21.098 108.682 1 103.15 ? O2B ATP 1603 A 1 HETATM 8 O O3B ATP . . . E 4 43.72 20.478 111.016 1 107.08 ? O3B ATP 1603 A 1 HETATM 9 P PA ATP . . . E 4 42.797 17.271 108.908 1 68.77 ? PA ATP 1603 A 1 HETATM 10 O O1A ATP . . . E 4 42.42 17.291 107.484 1 68.87 ? O1A ATP 1603 A 1 HETATM 11 O O2A ATP . . . E 4 41.606 17.011 109.828 1 78.41 ? O2A ATP 1603 A 1 HETATM 12 O O3A ATP . . . E 4 43.411 18.661 109.35 1 79.97 ? O3A ATP 1603 A 1 HETATM 13 O O5' ATP . . . E 4 43.9 16.176 109.176 1 80.24 ? O5' ATP 1603 A 1 HETATM 14 C C5' ATP . . . E 4 43.585 14.962 109.89 1 70.01 ? C5' ATP 1603 A 1 HETATM 15 C C4' ATP . . . E 4 44.502 14.957 111.078 1 64.76 ? C4' ATP 1603 A 1 HETATM 16 O O4' ATP . . . E 4 45.743 15.539 110.665 1 60.29 ? O4' ATP 1603 A 1 HETATM 17 C C3' ATP . . . E 4 44.007 15.795 112.252 1 69.4 ? C3' ATP 1603 A 1 HETATM 18 O O3' ATP . . . E 4 43.474 14.944 113.263 1 76.71 ? O3' ATP 1603 A 1 HETATM 19 C C2' ATP . . . E 4 45.247 16.551 112.75 1 64.67 ? C2' ATP 1603 A 1 HETATM 20 O O2' ATP . . . E 4 45.591 16.083 114.049 1 65.92 ? O2' ATP 1603 A 1 HETATM 21 C C1' ATP . . . E 4 46.349 16.211 111.737 1 57.67 ? C1' ATP 1603 A 1 HETATM 22 N N9 ATP . . . E 4 47.044 17.35 111.165 1 58.5 ? N9 ATP 1603 A 1 HETATM 23 C C8 ATP . . . E 4 46.511 18.319 110.36 1 67.05 ? C8 ATP 1603 A 1 HETATM 24 N N7 ATP . . . E 4 47.374 19.215 109.946 1 58.68 ? N7 ATP 1603 A 1 HETATM 25 C C5 ATP . . . E 4 48.576 18.777 110.491 1 62.58 ? C5 ATP 1603 A 1 HETATM 26 C C6 ATP . . . E 4 49.89 19.276 110.433 1 53.75 ? C6 ATP 1603 A 1 HETATM 27 N N6 ATP . . . E 4 50.24 20.384 109.762 1 51.48 ? N6 ATP 1603 A 1 HETATM 28 N N1 ATP . . . E 4 50.856 18.598 111.094 1 49.5 ? N1 ATP 1603 A 1 HETATM 29 C C2 ATP . . . E 4 50.527 17.492 111.763 1 54.64 ? C2 ATP 1603 A 1 HETATM 30 N N3 ATP . . . E 4 49.326 16.932 111.887 1 70.33 ? N3 ATP 1603 A 1 HETATM 31 C C4 ATP . . . E 4 48.39 17.622 111.228 1 63.34 ? C4 ATP 1603 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 470 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #