data_7Y1W # _model_server_result.job_id REP85MKn_XuddUZenHhA2g _model_server_result.datetime_utc '2025-07-31 00:44:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1604}' # _entry.id 7Y1W # _exptl.entry_id 7Y1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.77 _cell.angle_gamma 90 _cell.entry_id 7Y1W _cell.length_a 71.556 _cell.length_b 92.147 _cell.length_c 86.728 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 223 A GLN 1237 1_555 G MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc2 A SG CYS 434 A CYS 1448 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 439 A CYS 1453 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 481 A CYS 1495 1_555 C ZN ZN . A ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc5 E O3G ATP . A ATP 1603 1_555 F MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc6 E O2B ATP . A ATP 1603 1_555 F MG MG . A MG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc7 E O2G ATP . A ATP 1603 1_555 G MG MG . A MG 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 B SG CYS 434 B CYS 1448 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc9 B SG CYS 439 B CYS 1453 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc10 B SG CYS 481 B CYS 1495 1_555 H ZN ZN . B ZN 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y1W _atom_sites.fract_transf_matrix[1][1] 0.013975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004749 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1601 2604 ZN ZN . D 3 F9O A 1 1602 1 F9O DWN . E 4 ATP A 1 1603 1 ATP ATP . F 5 MG A 1 1604 1 MG MG . G 5 MG A 1 1605 3 MG MG . H 2 ZN B 1 1601 2604 ZN ZN . I 3 F9O B 1 1602 2 F9O DWN . J 6 HOH A 1 1701 11 HOH HOH . J 6 HOH A 2 1702 8 HOH HOH . J 6 HOH A 3 1703 6 HOH HOH . J 6 HOH A 4 1704 22 HOH HOH . J 6 HOH A 5 1705 16 HOH HOH . J 6 HOH A 6 1706 32 HOH HOH . J 6 HOH A 7 1707 14 HOH HOH . J 6 HOH A 8 1708 12 HOH HOH . J 6 HOH A 9 1709 2 HOH HOH . J 6 HOH A 10 1710 35 HOH HOH . J 6 HOH A 11 1711 25 HOH HOH . J 6 HOH A 12 1712 4 HOH HOH . J 6 HOH A 13 1713 7 HOH HOH . J 6 HOH A 14 1714 28 HOH HOH . J 6 HOH A 15 1715 34 HOH HOH . J 6 HOH A 16 1716 13 HOH HOH . J 6 HOH A 17 1717 15 HOH HOH . J 6 HOH A 18 1718 19 HOH HOH . J 6 HOH A 19 1719 3 HOH HOH . J 6 HOH A 20 1720 20 HOH HOH . J 6 HOH A 21 1721 10 HOH HOH . J 6 HOH A 22 1722 24 HOH HOH . J 6 HOH A 23 1723 23 HOH HOH . J 6 HOH A 24 1724 1 HOH HOH . J 6 HOH A 25 1725 37 HOH HOH . J 6 HOH A 26 1726 36 HOH HOH . J 6 HOH A 27 1727 21 HOH HOH . K 6 HOH B 1 1701 29 HOH HOH . K 6 HOH B 2 1702 5 HOH HOH . K 6 HOH B 3 1703 31 HOH HOH . K 6 HOH B 4 1704 27 HOH HOH . K 6 HOH B 5 1705 18 HOH HOH . K 6 HOH B 6 1706 30 HOH HOH . K 6 HOH B 7 1707 26 HOH HOH . K 6 HOH B 8 1708 17 HOH HOH . K 6 HOH B 9 1709 9 HOH HOH . K 6 HOH B 10 1710 33 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 44.599 _atom_site.Cartn_y 22.839 _atom_site.Cartn_z 108.555 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #