data_7Y28
#
_model_server_result.job_id            xZy1M88Dm91HuHSOiPQVlw 
_model_server_result.datetime_utc      '2025-07-03 23:18:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y28 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":2604}' 
#
_entry.id    7Y28 
#
_exptl.entry_id    7Y28 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.72 
_cell.angle_gamma         90 
_cell.entry_id            7Y28 
_cell.length_a            71.563 
_cell.length_b            92.38 
_cell.length_c            86.059 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y28 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 222 A GLN 1237 1_555 G MG MG . A MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc2 A SG CYS 433 A CYS 1448 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc3 A SG CYS 438 A CYS 1453 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 A SG CYS 480 A CYS 1495 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc5 A SG CYS 482 A CYS 1497 1_555 E ZN ZN . A ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc6 D O1G ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc7 D O2B ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc8 D O2G ATP . A ATP 2602 1_555 G MG MG . A MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc9 D O1B ATP . A ATP 2602 1_555 G MG MG . A MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc10 B SG CYS 433 B CYS 1448 1_555 J ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc11 B SG CYS 438 B CYS 1453 1_555 J ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc12 I O3G ATP . B ATP 2602 1_555 K MG MG . B MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc13 I O1B ATP . B ATP 2602 1_555 K MG MG . B MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? 
metalc ? metalc14 I O2B ATP . B ATP 2602 1_555 L MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Y28 
_atom_sites.fract_transf_matrix[1][1]    0.013974 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004735 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010825 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F96 A 1 2601 2601 F96 DW5 . 
D 3 ATP A 1 2602 2602 ATP ATP . 
E 4 ZN A 1 2603 2603 ZN ZN . 
F 5 MG A 1 2604 2604 MG MG . 
G 5 MG A 1 2605 2605 MG MG . 
H 2 F96 B 1 2601 2601 F96 DW5 . 
I 3 ATP B 1 2602 2602 ATP ATP . 
J 4 ZN B 1 2603 2603 ZN ZN . 
K 5 MG B 1 2604 2604 MG MG . 
L 5 MG B 1 2605 2605 MG MG . 
M 6 HOH A 1 2701 72 HOH HOH . 
M 6 HOH A 2 2702 71 HOH HOH . 
M 6 HOH A 3 2703 132 HOH HOH . 
M 6 HOH A 4 2704 60 HOH HOH . 
M 6 HOH A 5 2705 62 HOH HOH . 
M 6 HOH A 6 2706 120 HOH HOH . 
M 6 HOH A 7 2707 17 HOH HOH . 
M 6 HOH A 8 2708 41 HOH HOH . 
M 6 HOH A 9 2709 84 HOH HOH . 
M 6 HOH A 10 2710 117 HOH HOH . 
M 6 HOH A 11 2711 65 HOH HOH . 
M 6 HOH A 12 2712 32 HOH HOH . 
M 6 HOH A 13 2713 14 HOH HOH . 
M 6 HOH A 14 2714 92 HOH HOH . 
M 6 HOH A 15 2715 68 HOH HOH . 
M 6 HOH A 16 2716 12 HOH HOH . 
M 6 HOH A 17 2717 91 HOH HOH . 
M 6 HOH A 18 2718 125 HOH HOH . 
M 6 HOH A 19 2719 26 HOH HOH . 
M 6 HOH A 20 2720 78 HOH HOH . 
M 6 HOH A 21 2721 7 HOH HOH . 
M 6 HOH A 22 2722 5 HOH HOH . 
M 6 HOH A 23 2723 1 HOH HOH . 
M 6 HOH A 24 2724 97 HOH HOH . 
M 6 HOH A 25 2725 18 HOH HOH . 
M 6 HOH A 26 2726 63 HOH HOH . 
M 6 HOH A 27 2727 15 HOH HOH . 
M 6 HOH A 28 2728 50 HOH HOH . 
M 6 HOH A 29 2729 69 HOH HOH . 
M 6 HOH A 30 2730 109 HOH HOH . 
M 6 HOH A 31 2731 112 HOH HOH . 
M 6 HOH A 32 2732 57 HOH HOH . 
M 6 HOH A 33 2733 105 HOH HOH . 
M 6 HOH A 34 2734 45 HOH HOH . 
M 6 HOH A 35 2735 93 HOH HOH . 
M 6 HOH A 36 2736 47 HOH HOH . 
M 6 HOH A 37 2737 129 HOH HOH . 
M 6 HOH A 38 2738 22 HOH HOH . 
M 6 HOH A 39 2739 44 HOH HOH . 
M 6 HOH A 40 2740 29 HOH HOH . 
M 6 HOH A 41 2741 53 HOH HOH . 
M 6 HOH A 42 2742 16 HOH HOH . 
M 6 HOH A 43 2743 28 HOH HOH . 
M 6 HOH A 44 2744 23 HOH HOH . 
M 6 HOH A 45 2745 21 HOH HOH . 
M 6 HOH A 46 2746 27 HOH HOH . 
M 6 HOH A 47 2747 38 HOH HOH . 
M 6 HOH A 48 2748 4 HOH HOH . 
M 6 HOH A 49 2749 123 HOH HOH . 
M 6 HOH A 50 2750 89 HOH HOH . 
M 6 HOH A 51 2751 13 HOH HOH . 
M 6 HOH A 52 2752 2 HOH HOH . 
M 6 HOH A 53 2753 9 HOH HOH . 
M 6 HOH A 54 2754 86 HOH HOH . 
M 6 HOH A 55 2755 25 HOH HOH . 
M 6 HOH A 56 2756 43 HOH HOH . 
M 6 HOH A 57 2757 110 HOH HOH . 
M 6 HOH A 58 2758 83 HOH HOH . 
M 6 HOH A 59 2759 37 HOH HOH . 
M 6 HOH A 60 2760 107 HOH HOH . 
M 6 HOH A 61 2761 111 HOH HOH . 
M 6 HOH A 62 2762 130 HOH HOH . 
M 6 HOH A 63 2763 88 HOH HOH . 
M 6 HOH A 64 2764 61 HOH HOH . 
M 6 HOH A 65 2765 75 HOH HOH . 
M 6 HOH A 66 2766 133 HOH HOH . 
M 6 HOH A 67 2767 118 HOH HOH . 
M 6 HOH A 68 2768 58 HOH HOH . 
M 6 HOH A 69 2769 113 HOH HOH . 
M 6 HOH A 70 2770 46 HOH HOH . 
M 6 HOH A 71 2771 119 HOH HOH . 
M 6 HOH A 72 2772 70 HOH HOH . 
M 6 HOH A 73 2773 56 HOH HOH . 
M 6 HOH A 74 2774 122 HOH HOH . 
M 6 HOH A 75 2775 116 HOH HOH . 
M 6 HOH A 76 2776 128 HOH HOH . 
M 6 HOH A 77 2777 90 HOH HOH . 
N 6 HOH B 1 2701 104 HOH HOH . 
N 6 HOH B 2 2702 115 HOH HOH . 
N 6 HOH B 3 2703 102 HOH HOH . 
N 6 HOH B 4 2704 76 HOH HOH . 
N 6 HOH B 5 2705 54 HOH HOH . 
N 6 HOH B 6 2706 6 HOH HOH . 
N 6 HOH B 7 2707 8 HOH HOH . 
N 6 HOH B 8 2708 67 HOH HOH . 
N 6 HOH B 9 2709 96 HOH HOH . 
N 6 HOH B 10 2710 10 HOH HOH . 
N 6 HOH B 11 2711 31 HOH HOH . 
N 6 HOH B 12 2712 131 HOH HOH . 
N 6 HOH B 13 2713 42 HOH HOH . 
N 6 HOH B 14 2714 94 HOH HOH . 
N 6 HOH B 15 2715 55 HOH HOH . 
N 6 HOH B 16 2716 106 HOH HOH . 
N 6 HOH B 17 2717 36 HOH HOH . 
N 6 HOH B 18 2718 59 HOH HOH . 
N 6 HOH B 19 2719 11 HOH HOH . 
N 6 HOH B 20 2720 35 HOH HOH . 
N 6 HOH B 21 2721 3 HOH HOH . 
N 6 HOH B 22 2722 48 HOH HOH . 
N 6 HOH B 23 2723 66 HOH HOH . 
N 6 HOH B 24 2724 73 HOH HOH . 
N 6 HOH B 25 2725 85 HOH HOH . 
N 6 HOH B 26 2726 52 HOH HOH . 
N 6 HOH B 27 2727 49 HOH HOH . 
N 6 HOH B 28 2728 64 HOH HOH . 
N 6 HOH B 29 2729 20 HOH HOH . 
N 6 HOH B 30 2730 33 HOH HOH . 
N 6 HOH B 31 2731 34 HOH HOH . 
N 6 HOH B 32 2732 126 HOH HOH . 
N 6 HOH B 33 2733 51 HOH HOH . 
N 6 HOH B 34 2734 87 HOH HOH . 
N 6 HOH B 35 2735 81 HOH HOH . 
N 6 HOH B 36 2736 80 HOH HOH . 
N 6 HOH B 37 2737 103 HOH HOH . 
N 6 HOH B 38 2738 99 HOH HOH . 
N 6 HOH B 39 2739 74 HOH HOH . 
N 6 HOH B 40 2740 39 HOH HOH . 
N 6 HOH B 41 2741 100 HOH HOH . 
N 6 HOH B 42 2742 98 HOH HOH . 
N 6 HOH B 43 2743 124 HOH HOH . 
N 6 HOH B 44 2744 19 HOH HOH . 
N 6 HOH B 45 2745 134 HOH HOH . 
N 6 HOH B 46 2746 79 HOH HOH . 
N 6 HOH B 47 2747 95 HOH HOH . 
N 6 HOH B 48 2748 24 HOH HOH . 
N 6 HOH B 49 2749 77 HOH HOH . 
N 6 HOH B 50 2750 121 HOH HOH . 
N 6 HOH B 51 2751 108 HOH HOH . 
N 6 HOH B 52 2752 101 HOH HOH . 
N 6 HOH B 53 2753 30 HOH HOH . 
N 6 HOH B 54 2754 40 HOH HOH . 
N 6 HOH B 55 2755 127 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               40.949 
_atom_site.Cartn_y               5.52 
_atom_site.Cartn_z               167.276 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        72.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2604 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#