data_7Y2A # _model_server_result.job_id TTkBTao9dfS60jJHj3QI2g _model_server_result.datetime_utc '2024-11-29 06:12:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y2a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7Y2A # _exptl.entry_id 7Y2A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.145 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3-NITROPHENYL)ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.34 _cell.angle_gamma 90 _cell.entry_id 7Y2A _cell.length_a 42.173 _cell.length_b 41.296 _cell.length_c 72.058 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y2A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C8 H7 N O4' _chem_comp.formula_weight 181.145 _chem_comp.id MNP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3-NITROPHENYL)ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MNP sing 237 n n C1 O1 MNP doub 238 n n C1 O2 MNP sing 239 n n C2 C1' MNP sing 240 n n C2 H21 MNP sing 241 n n C2 H22 MNP sing 242 n n C1' C2' MNP doub 243 n y C1' C6' MNP sing 244 n y C2' C3' MNP sing 245 n y C2' H2' MNP sing 246 n n C3' N3' MNP sing 247 n n C3' C4' MNP doub 248 n y N3' O3' MNP sing 249 n n N3' O4' MNP doub 250 n n C4' C5' MNP sing 251 n y C4' H4' MNP sing 252 n n C5' C6' MNP doub 253 n y C5' H5' MNP sing 254 n n C6' H6' MNP sing 255 n n O2 HO2 MNP sing 256 n n # _atom_sites.entry_id 7Y2A _atom_sites.fract_transf_matrix[1][1] 0.023712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 MNP A 1 302 1 MNP MNP . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 403 HOH HOH . D 4 HOH A 3 403 421 HOH HOH . D 4 HOH A 4 404 426 HOH HOH . D 4 HOH A 5 405 443 HOH HOH . D 4 HOH A 6 406 413 HOH HOH . D 4 HOH A 7 407 452 HOH HOH . D 4 HOH A 8 408 445 HOH HOH . D 4 HOH A 9 409 526 HOH HOH . D 4 HOH A 10 410 516 HOH HOH . D 4 HOH A 11 411 419 HOH HOH . D 4 HOH A 12 412 442 HOH HOH . D 4 HOH A 13 413 424 HOH HOH . D 4 HOH A 14 414 481 HOH HOH . D 4 HOH A 15 415 422 HOH HOH . D 4 HOH A 16 416 439 HOH HOH . D 4 HOH A 17 417 420 HOH HOH . D 4 HOH A 18 418 440 HOH HOH . D 4 HOH A 19 419 423 HOH HOH . D 4 HOH A 20 420 425 HOH HOH . D 4 HOH A 21 421 417 HOH HOH . D 4 HOH A 22 422 411 HOH HOH . D 4 HOH A 23 423 427 HOH HOH . D 4 HOH A 24 424 479 HOH HOH . D 4 HOH A 25 425 4 HOH HOH . D 4 HOH A 26 426 500 HOH HOH . D 4 HOH A 27 427 497 HOH HOH . D 4 HOH A 28 428 430 HOH HOH . D 4 HOH A 29 429 483 HOH HOH . D 4 HOH A 30 430 532 HOH HOH . D 4 HOH A 31 431 453 HOH HOH . D 4 HOH A 32 432 582 HOH HOH . D 4 HOH A 33 433 444 HOH HOH . D 4 HOH A 34 434 460 HOH HOH . D 4 HOH A 35 435 457 HOH HOH . D 4 HOH A 36 436 461 HOH HOH . D 4 HOH A 37 437 441 HOH HOH . D 4 HOH A 38 438 459 HOH HOH . D 4 HOH A 39 439 436 HOH HOH . D 4 HOH A 40 440 610 HOH HOH . D 4 HOH A 41 441 562 HOH HOH . D 4 HOH A 42 442 406 HOH HOH . D 4 HOH A 43 443 490 HOH HOH . D 4 HOH A 44 444 455 HOH HOH . D 4 HOH A 45 445 472 HOH HOH . D 4 HOH A 46 446 447 HOH HOH . D 4 HOH A 47 447 468 HOH HOH . D 4 HOH A 48 448 428 HOH HOH . D 4 HOH A 49 449 476 HOH HOH . D 4 HOH A 50 450 458 HOH HOH . D 4 HOH A 51 451 450 HOH HOH . D 4 HOH A 52 452 515 HOH HOH . D 4 HOH A 53 453 538 HOH HOH . D 4 HOH A 54 454 466 HOH HOH . D 4 HOH A 55 455 410 HOH HOH . D 4 HOH A 56 456 463 HOH HOH . D 4 HOH A 57 457 451 HOH HOH . D 4 HOH A 58 458 414 HOH HOH . D 4 HOH A 59 459 521 HOH HOH . D 4 HOH A 60 460 464 HOH HOH . D 4 HOH A 61 461 488 HOH HOH . D 4 HOH A 62 462 485 HOH HOH . D 4 HOH A 63 463 431 HOH HOH . D 4 HOH A 64 464 478 HOH HOH . D 4 HOH A 65 465 437 HOH HOH . D 4 HOH A 66 466 409 HOH HOH . D 4 HOH A 67 467 512 HOH HOH . D 4 HOH A 68 468 462 HOH HOH . D 4 HOH A 69 469 533 HOH HOH . D 4 HOH A 70 470 489 HOH HOH . D 4 HOH A 71 471 465 HOH HOH . D 4 HOH A 72 472 454 HOH HOH . D 4 HOH A 73 473 467 HOH HOH . D 4 HOH A 74 474 509 HOH HOH . D 4 HOH A 75 475 435 HOH HOH . D 4 HOH A 76 476 505 HOH HOH . D 4 HOH A 77 477 456 HOH HOH . D 4 HOH A 78 478 432 HOH HOH . D 4 HOH A 79 479 495 HOH HOH . D 4 HOH A 80 480 545 HOH HOH . D 4 HOH A 81 481 470 HOH HOH . D 4 HOH A 82 482 530 HOH HOH . D 4 HOH A 83 483 418 HOH HOH . D 4 HOH A 84 484 475 HOH HOH . D 4 HOH A 85 485 555 HOH HOH . D 4 HOH A 86 486 469 HOH HOH . D 4 HOH A 87 487 493 HOH HOH . D 4 HOH A 88 488 486 HOH HOH . D 4 HOH A 89 489 5 HOH HOH . D 4 HOH A 90 490 551 HOH HOH . D 4 HOH A 91 491 523 HOH HOH . D 4 HOH A 92 492 501 HOH HOH . D 4 HOH A 93 493 534 HOH HOH . D 4 HOH A 94 494 527 HOH HOH . D 4 HOH A 95 495 491 HOH HOH . D 4 HOH A 96 496 471 HOH HOH . D 4 HOH A 97 497 480 HOH HOH . D 4 HOH A 98 498 522 HOH HOH . D 4 HOH A 99 499 499 HOH HOH . D 4 HOH A 100 500 563 HOH HOH . D 4 HOH A 101 501 518 HOH HOH . D 4 HOH A 102 502 513 HOH HOH . D 4 HOH A 103 503 477 HOH HOH . D 4 HOH A 104 504 492 HOH HOH . D 4 HOH A 105 505 503 HOH HOH . D 4 HOH A 106 506 487 HOH HOH . D 4 HOH A 107 507 508 HOH HOH . D 4 HOH A 108 508 519 HOH HOH . D 4 HOH A 109 509 524 HOH HOH . D 4 HOH A 110 510 2 HOH HOH . D 4 HOH A 111 511 494 HOH HOH . D 4 HOH A 112 512 536 HOH HOH . D 4 HOH A 113 513 528 HOH HOH . D 4 HOH A 114 514 511 HOH HOH . D 4 HOH A 115 515 446 HOH HOH . D 4 HOH A 116 516 529 HOH HOH . D 4 HOH A 117 517 484 HOH HOH . D 4 HOH A 118 518 502 HOH HOH . D 4 HOH A 119 519 589 HOH HOH . D 4 HOH A 120 520 539 HOH HOH . D 4 HOH A 121 521 565 HOH HOH . D 4 HOH A 122 522 537 HOH HOH . D 4 HOH A 123 523 622 HOH HOH . D 4 HOH A 124 524 547 HOH HOH . D 4 HOH A 125 525 542 HOH HOH . D 4 HOH A 126 526 531 HOH HOH . D 4 HOH A 127 527 504 HOH HOH . D 4 HOH A 128 528 525 HOH HOH . D 4 HOH A 129 529 535 HOH HOH . D 4 HOH A 130 530 549 HOH HOH . D 4 HOH A 131 531 520 HOH HOH . D 4 HOH A 132 532 482 HOH HOH . D 4 HOH A 133 533 543 HOH HOH . D 4 HOH A 134 534 550 HOH HOH . D 4 HOH A 135 535 553 HOH HOH . D 4 HOH A 136 536 514 HOH HOH . D 4 HOH A 137 537 548 HOH HOH . D 4 HOH A 138 538 544 HOH HOH . D 4 HOH A 139 539 564 HOH HOH . D 4 HOH A 140 540 510 HOH HOH . D 4 HOH A 141 541 517 HOH HOH . D 4 HOH A 142 542 554 HOH HOH . D 4 HOH A 143 543 571 HOH HOH . D 4 HOH A 144 544 552 HOH HOH . D 4 HOH A 145 545 576 HOH HOH . D 4 HOH A 146 546 566 HOH HOH . D 4 HOH A 147 547 496 HOH HOH . D 4 HOH A 148 548 557 HOH HOH . D 4 HOH A 149 549 595 HOH HOH . D 4 HOH A 150 550 556 HOH HOH . D 4 HOH A 151 551 573 HOH HOH . D 4 HOH A 152 552 540 HOH HOH . D 4 HOH A 153 553 567 HOH HOH . D 4 HOH A 154 554 619 HOH HOH . D 4 HOH A 155 555 614 HOH HOH . D 4 HOH A 156 556 429 HOH HOH . D 4 HOH A 157 557 578 HOH HOH . D 4 HOH A 158 558 498 HOH HOH . D 4 HOH A 159 559 607 HOH HOH . D 4 HOH A 160 560 448 HOH HOH . D 4 HOH A 161 561 583 HOH HOH . D 4 HOH A 162 562 605 HOH HOH . D 4 HOH A 163 563 404 HOH HOH . D 4 HOH A 164 564 580 HOH HOH . D 4 HOH A 165 565 623 HOH HOH . D 4 HOH A 166 566 474 HOH HOH . D 4 HOH A 167 567 599 HOH HOH . D 4 HOH A 168 568 588 HOH HOH . D 4 HOH A 169 569 579 HOH HOH . D 4 HOH A 170 570 561 HOH HOH . D 4 HOH A 171 571 585 HOH HOH . D 4 HOH A 172 572 572 HOH HOH . D 4 HOH A 173 573 601 HOH HOH . D 4 HOH A 174 574 600 HOH HOH . D 4 HOH A 175 575 559 HOH HOH . D 4 HOH A 176 576 546 HOH HOH . D 4 HOH A 177 577 558 HOH HOH . D 4 HOH A 178 578 590 HOH HOH . D 4 HOH A 179 579 592 HOH HOH . D 4 HOH A 180 580 541 HOH HOH . D 4 HOH A 181 581 594 HOH HOH . D 4 HOH A 182 582 603 HOH HOH . D 4 HOH A 183 583 602 HOH HOH . D 4 HOH A 184 584 586 HOH HOH . D 4 HOH A 185 585 608 HOH HOH . D 4 HOH A 186 586 577 HOH HOH . D 4 HOH A 187 587 613 HOH HOH . D 4 HOH A 188 588 615 HOH HOH . D 4 HOH A 189 589 597 HOH HOH . D 4 HOH A 190 590 412 HOH HOH . D 4 HOH A 191 591 591 HOH HOH . D 4 HOH A 192 592 598 HOH HOH . D 4 HOH A 193 593 604 HOH HOH . D 4 HOH A 194 594 612 HOH HOH . D 4 HOH A 195 595 584 HOH HOH . D 4 HOH A 196 596 568 HOH HOH . D 4 HOH A 197 597 587 HOH HOH . D 4 HOH A 198 598 626 HOH HOH . D 4 HOH A 199 599 609 HOH HOH . D 4 HOH A 200 600 596 HOH HOH . D 4 HOH A 201 601 617 HOH HOH . D 4 HOH A 202 602 616 HOH HOH . D 4 HOH A 203 603 606 HOH HOH . D 4 HOH A 204 604 611 HOH HOH . D 4 HOH A 205 605 593 HOH HOH . D 4 HOH A 206 606 618 HOH HOH . D 4 HOH A 207 607 625 HOH HOH . D 4 HOH A 208 608 633 HOH HOH . D 4 HOH A 209 609 621 HOH HOH . D 4 HOH A 210 610 636 HOH HOH . D 4 HOH A 211 611 645 HOH HOH . D 4 HOH A 212 612 575 HOH HOH . D 4 HOH A 213 613 624 HOH HOH . D 4 HOH A 214 614 620 HOH HOH . D 4 HOH A 215 615 643 HOH HOH . D 4 HOH A 216 616 638 HOH HOH . D 4 HOH A 217 617 639 HOH HOH . D 4 HOH A 218 618 648 HOH HOH . D 4 HOH A 219 619 640 HOH HOH . D 4 HOH A 220 620 627 HOH HOH . D 4 HOH A 221 621 637 HOH HOH . D 4 HOH A 222 622 416 HOH HOH . D 4 HOH A 223 623 630 HOH HOH . D 4 HOH A 224 624 641 HOH HOH . D 4 HOH A 225 625 646 HOH HOH . D 4 HOH A 226 626 644 HOH HOH . D 4 HOH A 227 627 635 HOH HOH . D 4 HOH A 228 628 647 HOH HOH . D 4 HOH A 229 629 3 HOH HOH . D 4 HOH A 230 630 650 HOH HOH . D 4 HOH A 231 631 632 HOH HOH . D 4 HOH A 232 632 651 HOH HOH . D 4 HOH A 233 633 653 HOH HOH . D 4 HOH A 234 634 649 HOH HOH . D 4 HOH A 235 635 652 HOH HOH . D 4 HOH A 236 636 657 HOH HOH . D 4 HOH A 237 637 656 HOH HOH . D 4 HOH A 238 638 659 HOH HOH . D 4 HOH A 239 639 662 HOH HOH . D 4 HOH A 240 640 658 HOH HOH . D 4 HOH A 241 641 661 HOH HOH . D 4 HOH A 242 642 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MNP . . . C 3 19.392 5.663 12.434 1 11.96 ? C1 MNP 302 A 1 HETATM 2 C C2 MNP . . . C 3 19.247 6.404 13.713 1 9.79 ? C2 MNP 302 A 1 HETATM 3 C C1' MNP . . . C 3 17.837 6.296 14.159 1 7.97 ? C1' MNP 302 A 1 HETATM 4 C C2' MNP . . . C 3 17.477 5.343 15.059 1 7.07 ? C2' MNP 302 A 1 HETATM 5 C C3' MNP . . . C 3 16.134 5.224 15.446 1 7.27 ? C3' MNP 302 A 1 HETATM 6 N N3' MNP . . . C 3 15.748 4.225 16.382 1 8.64 ? N3' MNP 302 A 1 HETATM 7 O O3' MNP . . . C 3 14.525 3.911 16.556 1 11.56 ? O3' MNP 302 A 1 HETATM 8 O O4' MNP . . . C 3 16.594 3.63 17.02 1 9.67 ? O4' MNP 302 A 1 HETATM 9 C C4' MNP . . . C 3 15.121 6.019 14.948 1 7.94 ? C4' MNP 302 A 1 HETATM 10 C C5' MNP . . . C 3 15.515 7.018 14.012 1 8.93 ? C5' MNP 302 A 1 HETATM 11 C C6' MNP . . . C 3 16.878 7.147 13.641 1 8.58 ? C6' MNP 302 A 1 HETATM 12 O O1 MNP . . . C 3 19.191 6.249 11.292 1 14.36 ? O1 MNP 302 A 1 HETATM 13 O O2 MNP . . . C 3 19.664 4.492 12.435 1 10.79 ? O2 MNP 302 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #