data_7Y2D # _model_server_result.job_id 6-Ibtgc5w6tox54k9EfsIQ _model_server_result.datetime_utc '2024-11-12 21:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 7Y2D # _exptl.entry_id 7Y2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.66 _cell.angle_gamma 90 _cell.entry_id 7Y2D _cell.length_a 186.33 _cell.length_b 38.83 _cell.length_c 95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 144 A HIS 146 1_555 H CU1 IC4 . A IC4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A NE2 HIS 240 A HIS 242 1_555 I CU1 IC4 . A IC4 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 293 n n C1 O2 PLM doub 294 n n C1 C2 PLM sing 295 n n O1 H PLM sing 296 n n C2 C3 PLM sing 297 n n C2 H21 PLM sing 298 n n C2 H22 PLM sing 299 n n C3 C4 PLM sing 300 n n C3 H31 PLM sing 301 n n C3 H32 PLM sing 302 n n C4 C5 PLM sing 303 n n C4 H41 PLM sing 304 n n C4 H42 PLM sing 305 n n C5 C6 PLM sing 306 n n C5 H51 PLM sing 307 n n C5 H52 PLM sing 308 n n C6 C7 PLM sing 309 n n C6 H61 PLM sing 310 n n C6 H62 PLM sing 311 n n C7 C8 PLM sing 312 n n C7 H71 PLM sing 313 n n C7 H72 PLM sing 314 n n C8 C9 PLM sing 315 n n C8 H81 PLM sing 316 n n C8 H82 PLM sing 317 n n C9 CA PLM sing 318 n n C9 H91 PLM sing 319 n n C9 H92 PLM sing 320 n n CA CB PLM sing 321 n n CA HA1 PLM sing 322 n n CA HA2 PLM sing 323 n n CB CC PLM sing 324 n n CB HB1 PLM sing 325 n n CB HB2 PLM sing 326 n n CC CD PLM sing 327 n n CC HC1 PLM sing 328 n n CC HC2 PLM sing 329 n n CD CE PLM sing 330 n n CD HD1 PLM sing 331 n n CD HD2 PLM sing 332 n n CE CF PLM sing 333 n n CE HE1 PLM sing 334 n n CE HE2 PLM sing 335 n n CF CG PLM sing 336 n n CF HF1 PLM sing 337 n n CF HF2 PLM sing 338 n n CG HG1 PLM sing 339 n n CG HG2 PLM sing 340 n n CG HG3 PLM sing 341 n n # _atom_sites.entry_id 7Y2D _atom_sites.fract_transf_matrix[1][1] 0.005367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1001 1001 PLM PLM . C 2 PLM A 1 1002 1002 PLM PLM . D 2 PLM A 1 1003 1003 PLM PLM . E 2 PLM A 1 1004 1004 PLM PLM . F 2 PLM A 1 1005 1005 PLM PLM . G 2 PLM A 1 1006 1006 PLM PLM . H 3 IC4 A 1 1007 1 IC4 1 . I 3 IC4 A 1 1008 2 IC4 1 . J 4 HOH A 1 1101 9 HOH HOH . J 4 HOH A 2 1102 61 HOH HOH . J 4 HOH A 3 1103 52 HOH HOH . J 4 HOH A 4 1104 48 HOH HOH . J 4 HOH A 5 1105 51 HOH HOH . J 4 HOH A 6 1106 67 HOH HOH . J 4 HOH A 7 1107 49 HOH HOH . J 4 HOH A 8 1108 55 HOH HOH . J 4 HOH A 9 1109 7 HOH HOH . J 4 HOH A 10 1110 1 HOH HOH . J 4 HOH A 11 1111 38 HOH HOH . J 4 HOH A 12 1112 74 HOH HOH . J 4 HOH A 13 1113 63 HOH HOH . J 4 HOH A 14 1114 46 HOH HOH . J 4 HOH A 15 1115 23 HOH HOH . J 4 HOH A 16 1116 18 HOH HOH . J 4 HOH A 17 1117 73 HOH HOH . J 4 HOH A 18 1118 56 HOH HOH . J 4 HOH A 19 1119 72 HOH HOH . J 4 HOH A 20 1120 15 HOH HOH . J 4 HOH A 21 1121 5 HOH HOH . J 4 HOH A 22 1122 24 HOH HOH . J 4 HOH A 23 1123 29 HOH HOH . J 4 HOH A 24 1124 22 HOH HOH . J 4 HOH A 25 1125 2 HOH HOH . J 4 HOH A 26 1126 47 HOH HOH . J 4 HOH A 27 1127 66 HOH HOH . J 4 HOH A 28 1128 20 HOH HOH . J 4 HOH A 29 1129 6 HOH HOH . J 4 HOH A 30 1130 54 HOH HOH . J 4 HOH A 31 1131 21 HOH HOH . J 4 HOH A 32 1132 58 HOH HOH . J 4 HOH A 33 1133 43 HOH HOH . J 4 HOH A 34 1134 68 HOH HOH . J 4 HOH A 35 1135 3 HOH HOH . J 4 HOH A 36 1136 8 HOH HOH . J 4 HOH A 37 1137 53 HOH HOH . J 4 HOH A 38 1138 25 HOH HOH . J 4 HOH A 39 1139 50 HOH HOH . J 4 HOH A 40 1140 40 HOH HOH . J 4 HOH A 41 1141 37 HOH HOH . J 4 HOH A 42 1142 34 HOH HOH . J 4 HOH A 43 1143 42 HOH HOH . J 4 HOH A 44 1144 31 HOH HOH . J 4 HOH A 45 1145 27 HOH HOH . J 4 HOH A 46 1146 77 HOH HOH . J 4 HOH A 47 1147 4 HOH HOH . J 4 HOH A 48 1148 19 HOH HOH . J 4 HOH A 49 1149 81 HOH HOH . J 4 HOH A 50 1150 36 HOH HOH . J 4 HOH A 51 1151 35 HOH HOH . J 4 HOH A 52 1152 80 HOH HOH . J 4 HOH A 53 1153 70 HOH HOH . J 4 HOH A 54 1154 13 HOH HOH . J 4 HOH A 55 1155 32 HOH HOH . J 4 HOH A 56 1156 41 HOH HOH . J 4 HOH A 57 1157 14 HOH HOH . J 4 HOH A 58 1158 26 HOH HOH . J 4 HOH A 59 1159 59 HOH HOH . J 4 HOH A 60 1160 65 HOH HOH . J 4 HOH A 61 1161 16 HOH HOH . J 4 HOH A 62 1162 71 HOH HOH . J 4 HOH A 63 1163 64 HOH HOH . J 4 HOH A 64 1164 10 HOH HOH . J 4 HOH A 65 1165 12 HOH HOH . J 4 HOH A 66 1166 62 HOH HOH . J 4 HOH A 67 1167 11 HOH HOH . J 4 HOH A 68 1168 33 HOH HOH . J 4 HOH A 69 1169 44 HOH HOH . J 4 HOH A 70 1170 17 HOH HOH . J 4 HOH A 71 1171 76 HOH HOH . J 4 HOH A 72 1172 57 HOH HOH . J 4 HOH A 73 1173 28 HOH HOH . J 4 HOH A 74 1174 69 HOH HOH . J 4 HOH A 75 1175 82 HOH HOH . J 4 HOH A 76 1176 30 HOH HOH . J 4 HOH A 77 1177 60 HOH HOH . J 4 HOH A 78 1178 78 HOH HOH . J 4 HOH A 79 1179 45 HOH HOH . J 4 HOH A 80 1180 39 HOH HOH . J 4 HOH A 81 1181 75 HOH HOH . J 4 HOH A 82 1182 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . F 2 0.475 2.856 37.896 1 72.65 ? C1 PLM 1005 A 1 HETATM 2 O O1 PLM . . . F 2 -0.568 3.337 38.452 1 70.17 ? O1 PLM 1005 A 1 HETATM 3 O O2 PLM . . . F 2 1.685 3.201 38.059 1 64.99 ? O2 PLM 1005 A 1 HETATM 4 C C2 PLM . . . F 2 0.201 1.67 36.852 1 64.34 ? C2 PLM 1005 A 1 HETATM 5 C C3 PLM . . . F 2 0.912 0.314 37.146 1 58.27 ? C3 PLM 1005 A 1 HETATM 6 C C4 PLM . . . F 2 0.026 -0.668 37.849 1 59.53 ? C4 PLM 1005 A 1 HETATM 7 C C5 PLM . . . F 2 0.642 -2.045 38.082 1 59.48 ? C5 PLM 1005 A 1 HETATM 8 C C6 PLM . . . F 2 -0.393 -3.166 37.978 1 55.78 ? C6 PLM 1005 A 1 HETATM 9 C C7 PLM . . . F 2 -0.367 -4.201 39.091 1 53.88 ? C7 PLM 1005 A 1 HETATM 10 C C8 PLM . . . F 2 -1.789 -4.618 39.469 1 56 ? C8 PLM 1005 A 1 HETATM 11 C C9 PLM . . . F 2 -1.911 -5.856 40.378 1 53.43 ? C9 PLM 1005 A 1 HETATM 12 C CA PLM . . . F 2 -3.28 -5.898 41.121 1 60.38 ? CA PLM 1005 A 1 HETATM 13 C CB PLM . . . F 2 -3.731 -7.287 41.566 1 54.4 ? CB PLM 1005 A 1 HETATM 14 C CC PLM . . . F 2 -4.376 -8.12 40.469 1 61.67 ? CC PLM 1005 A 1 HETATM 15 C CD PLM . . . F 2 -4.709 -9.594 40.883 1 58.58 ? CD PLM 1005 A 1 HETATM 16 C CE PLM . . . F 2 -5.386 -10.365 39.763 1 56.44 ? CE PLM 1005 A 1 HETATM 17 C CF PLM . . . F 2 -5.168 -11.873 39.855 1 65.17 ? CF PLM 1005 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #