data_7Y2D # _model_server_result.job_id aX0TyLSGsjucxjcmuhAZ6w _model_server_result.datetime_utc '2024-11-12 21:18:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y2d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 7Y2D # _exptl.entry_id 7Y2D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.851 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 13-methoxy-~{N},~{N}-dimethyl-2-oxa-4-thia-6,7$l^{4}-diaza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(9),5,7,10,12-pentaen-5-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.66 _cell.angle_gamma 90 _cell.entry_id 7Y2D _cell.length_a 186.33 _cell.length_b 38.83 _cell.length_c 95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y2D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 53 1_555 A SG CYS 60 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 73 A CYS 75 1_555 A SG CYS 89 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 88 A CYS 90 1_555 A SG CYS 99 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 122 A CYS 124 1_555 A SG CYS 167 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf5 A SG CYS 166 A CYS 168 1_555 A SG CYS 175 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 198 A CYS 200 1_555 A SG CYS 244 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf7 A SG CYS 243 A CYS 245 1_555 A SG CYS 251 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf8 A SG CYS 263 A CYS 265 1_555 A SG CYS 277 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 A SG CYS 276 A CYS 278 1_555 A SG CYS 287 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf10 A SG CYS 314 A CYS 316 1_555 A SG CYS 359 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf11 A SG CYS 358 A CYS 360 1_555 A SG CYS 367 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 A SG CYS 390 A CYS 392 1_555 A SG CYS 436 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 A SG CYS 435 A CYS 437 1_555 A SG CYS 446 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf14 A SG CYS 459 A CYS 461 1_555 A SG CYS 475 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf15 A SG CYS 474 A CYS 476 1_555 A SG CYS 485 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf16 A SG CYS 512 A CYS 514 1_555 A SG CYS 557 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf17 A SG CYS 556 A CYS 558 1_555 A SG CYS 565 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A NE2 HIS 144 A HIS 146 1_555 H CU1 IC4 . A IC4 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc2 A NE2 HIS 240 A HIS 242 1_555 I CU1 IC4 . A IC4 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? # _chem_comp.formula 'C11 H13 Cu N3 O2 S' _chem_comp.formula_weight 314.851 _chem_comp.id IC4 _chem_comp.mon_nstd_flag . _chem_comp.name 13-methoxy-~{N},~{N}-dimethyl-2-oxa-4-thia-6,7$l^{4}-diaza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(9),5,7,10,12-pentaen-5-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O14 IC4 sing 152 n n O14 C1 IC4 sing 153 n n C1 C6 IC4 doub 154 n y C1 C2 IC4 sing 155 n y O13 C2 IC4 sing 156 n n O13 CU1 IC4 sing 157 n n C6 C5 IC4 sing 158 n y C2 C3 IC4 doub 159 n y CU1 S12 IC4 sing 160 n n CU1 N8 IC4 sing 161 n n C5 C4 IC4 doub 162 n y C3 C4 IC4 sing 163 n y C3 C7 IC4 sing 164 n n S12 C10 IC4 sing 165 n n C7 N8 IC4 doub 166 n n N8 N9 IC4 sing 167 n n N9 C10 IC4 doub 168 n n C10 N11 IC4 sing 169 n n N11 C16 IC4 sing 170 n n N11 C17 IC4 sing 171 n n C4 H1 IC4 sing 172 n n C5 H2 IC4 sing 173 n n C6 H3 IC4 sing 174 n n C7 H4 IC4 sing 175 n n C15 H9 IC4 sing 176 n n C15 H10 IC4 sing 177 n n C15 H11 IC4 sing 178 n n C16 H12 IC4 sing 179 n n C16 H13 IC4 sing 180 n n C16 H14 IC4 sing 181 n n C17 H15 IC4 sing 182 n n C17 H16 IC4 sing 183 n n C17 H17 IC4 sing 184 n n # _atom_sites.entry_id 7Y2D _atom_sites.fract_transf_matrix[1][1] 0.005367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001504 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 1001 1001 PLM PLM . C 2 PLM A 1 1002 1002 PLM PLM . D 2 PLM A 1 1003 1003 PLM PLM . E 2 PLM A 1 1004 1004 PLM PLM . F 2 PLM A 1 1005 1005 PLM PLM . G 2 PLM A 1 1006 1006 PLM PLM . H 3 IC4 A 1 1007 1 IC4 1 . I 3 IC4 A 1 1008 2 IC4 1 . J 4 HOH A 1 1101 9 HOH HOH . J 4 HOH A 2 1102 61 HOH HOH . J 4 HOH A 3 1103 52 HOH HOH . J 4 HOH A 4 1104 48 HOH HOH . J 4 HOH A 5 1105 51 HOH HOH . J 4 HOH A 6 1106 67 HOH HOH . J 4 HOH A 7 1107 49 HOH HOH . J 4 HOH A 8 1108 55 HOH HOH . J 4 HOH A 9 1109 7 HOH HOH . J 4 HOH A 10 1110 1 HOH HOH . J 4 HOH A 11 1111 38 HOH HOH . J 4 HOH A 12 1112 74 HOH HOH . J 4 HOH A 13 1113 63 HOH HOH . J 4 HOH A 14 1114 46 HOH HOH . J 4 HOH A 15 1115 23 HOH HOH . J 4 HOH A 16 1116 18 HOH HOH . J 4 HOH A 17 1117 73 HOH HOH . J 4 HOH A 18 1118 56 HOH HOH . J 4 HOH A 19 1119 72 HOH HOH . J 4 HOH A 20 1120 15 HOH HOH . J 4 HOH A 21 1121 5 HOH HOH . J 4 HOH A 22 1122 24 HOH HOH . J 4 HOH A 23 1123 29 HOH HOH . J 4 HOH A 24 1124 22 HOH HOH . J 4 HOH A 25 1125 2 HOH HOH . J 4 HOH A 26 1126 47 HOH HOH . J 4 HOH A 27 1127 66 HOH HOH . J 4 HOH A 28 1128 20 HOH HOH . J 4 HOH A 29 1129 6 HOH HOH . J 4 HOH A 30 1130 54 HOH HOH . J 4 HOH A 31 1131 21 HOH HOH . J 4 HOH A 32 1132 58 HOH HOH . J 4 HOH A 33 1133 43 HOH HOH . J 4 HOH A 34 1134 68 HOH HOH . J 4 HOH A 35 1135 3 HOH HOH . J 4 HOH A 36 1136 8 HOH HOH . J 4 HOH A 37 1137 53 HOH HOH . J 4 HOH A 38 1138 25 HOH HOH . J 4 HOH A 39 1139 50 HOH HOH . J 4 HOH A 40 1140 40 HOH HOH . J 4 HOH A 41 1141 37 HOH HOH . J 4 HOH A 42 1142 34 HOH HOH . J 4 HOH A 43 1143 42 HOH HOH . J 4 HOH A 44 1144 31 HOH HOH . J 4 HOH A 45 1145 27 HOH HOH . J 4 HOH A 46 1146 77 HOH HOH . J 4 HOH A 47 1147 4 HOH HOH . J 4 HOH A 48 1148 19 HOH HOH . J 4 HOH A 49 1149 81 HOH HOH . J 4 HOH A 50 1150 36 HOH HOH . J 4 HOH A 51 1151 35 HOH HOH . J 4 HOH A 52 1152 80 HOH HOH . J 4 HOH A 53 1153 70 HOH HOH . J 4 HOH A 54 1154 13 HOH HOH . J 4 HOH A 55 1155 32 HOH HOH . J 4 HOH A 56 1156 41 HOH HOH . J 4 HOH A 57 1157 14 HOH HOH . J 4 HOH A 58 1158 26 HOH HOH . J 4 HOH A 59 1159 59 HOH HOH . J 4 HOH A 60 1160 65 HOH HOH . J 4 HOH A 61 1161 16 HOH HOH . J 4 HOH A 62 1162 71 HOH HOH . J 4 HOH A 63 1163 64 HOH HOH . J 4 HOH A 64 1164 10 HOH HOH . J 4 HOH A 65 1165 12 HOH HOH . J 4 HOH A 66 1166 62 HOH HOH . J 4 HOH A 67 1167 11 HOH HOH . J 4 HOH A 68 1168 33 HOH HOH . J 4 HOH A 69 1169 44 HOH HOH . J 4 HOH A 70 1170 17 HOH HOH . J 4 HOH A 71 1171 76 HOH HOH . J 4 HOH A 72 1172 57 HOH HOH . J 4 HOH A 73 1173 28 HOH HOH . J 4 HOH A 74 1174 69 HOH HOH . J 4 HOH A 75 1175 82 HOH HOH . J 4 HOH A 76 1176 30 HOH HOH . J 4 HOH A 77 1177 60 HOH HOH . J 4 HOH A 78 1178 78 HOH HOH . J 4 HOH A 79 1179 45 HOH HOH . J 4 HOH A 80 1180 39 HOH HOH . J 4 HOH A 81 1181 75 HOH HOH . J 4 HOH A 82 1182 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IC4 . . . H 3 31.586 1.623 28.899 1 69.59 ? C1 IC4 1007 A 1 HETATM 2 C C2 IC4 . . . H 3 31.095 0.593 29.724 1 68.3 ? C2 IC4 1007 A 1 HETATM 3 C C3 IC4 . . . H 3 30.709 0.896 31.032 1 70.03 ? C3 IC4 1007 A 1 HETATM 4 C C4 IC4 . . . H 3 30.786 2.201 31.503 1 68.82 ? C4 IC4 1007 A 1 HETATM 5 C C5 IC4 . . . H 3 31.271 3.214 30.68 1 72.69 ? C5 IC4 1007 A 1 HETATM 6 C C6 IC4 . . . H 3 31.666 2.927 29.382 1 63.93 ? C6 IC4 1007 A 1 HETATM 7 C C7 IC4 . . . H 3 30.167 -0.126 31.968 1 78.09 ? C7 IC4 1007 A 1 HETATM 8 N N8 IC4 . . . H 3 30.505 -1.346 32.028 1 79.87 ? N8 IC4 1007 A 1 HETATM 9 N N9 IC4 . . . H 3 30.214 -1.982 33.086 1 83.44 ? N9 IC4 1007 A 1 HETATM 10 C C10 IC4 . . . H 3 30.225 -3.263 33.16 1 84.83 ? C10 IC4 1007 A 1 HETATM 11 N N11 IC4 . . . H 3 29.616 -3.924 34.153 1 87.31 ? N11 IC4 1007 A 1 HETATM 12 S S12 IC4 . . . H 3 31.02 -4.109 31.955 1 88.02 ? S12 IC4 1007 A 1 HETATM 13 O O13 IC4 . . . H 3 30.978 -0.716 29.285 1 70.22 ? O13 IC4 1007 A 1 HETATM 14 O O14 IC4 . . . H 3 31.991 1.45 27.591 1 64.68 ? O14 IC4 1007 A 1 HETATM 15 C C15 IC4 . . . H 3 32.873 0.416 27.16 1 74.79 ? C15 IC4 1007 A 1 HETATM 16 C C16 IC4 . . . H 3 29.732 -5.378 34.272 1 84.59 ? C16 IC4 1007 A 1 HETATM 17 C C17 IC4 . . . H 3 28.795 -3.255 35.162 1 86.99 ? C17 IC4 1007 A 1 HETATM 18 CU CU1 IC4 . . . H 3 31.434 -2.283 30.494 1 71.21 ? CU1 IC4 1007 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #