data_7Y2E # _model_server_result.job_id q-CBQku-8Dx344PP1zQ9xw _model_server_result.datetime_utc '2024-10-25 20:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y2e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7Y2E # _exptl.entry_id 7Y2E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-NITROTOLUENE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.33 _cell.angle_gamma 90 _cell.entry_id 7Y2E _cell.length_a 42.249 _cell.length_b 41.364 _cell.length_c 72.187 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y2E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C7 H7 N O2' _chem_comp.formula_weight 137.136 _chem_comp.id 3NT _chem_comp.mon_nstd_flag . _chem_comp.name 3-NITROTOLUENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3NT doub 1 n y C1 C6 3NT sing 2 n y C1 C7 3NT sing 3 n n C2 C3 3NT sing 4 n y C2 H2 3NT sing 5 n n C3 C4 3NT doub 6 n y C3 N3 3NT sing 7 n n C4 C5 3NT sing 8 n y C4 H4 3NT sing 9 n n C5 C6 3NT doub 10 n y C5 H5 3NT sing 11 n n C6 H6 3NT sing 12 n n C7 H7C1 3NT sing 13 n n C7 H7C2 3NT sing 14 n n C7 H7C3 3NT sing 15 n n N3 O1N 3NT doub 16 n n N3 O2N 3NT sing 17 n n # _atom_sites.entry_id 7Y2E _atom_sites.fract_transf_matrix[1][1] 0.023669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006045 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 3NT A 1 302 1 3NT 3NT . D 4 HOH A 1 401 6 HOH HOH . D 4 HOH A 2 402 5 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 426 HOH HOH . D 4 HOH A 5 405 421 HOH HOH . D 4 HOH A 6 406 413 HOH HOH . D 4 HOH A 7 407 516 HOH HOH . D 4 HOH A 8 408 443 HOH HOH . D 4 HOH A 9 409 445 HOH HOH . D 4 HOH A 10 410 526 HOH HOH . D 4 HOH A 11 411 481 HOH HOH . D 4 HOH A 12 412 419 HOH HOH . D 4 HOH A 13 413 424 HOH HOH . D 4 HOH A 14 414 497 HOH HOH . D 4 HOH A 15 415 422 HOH HOH . D 4 HOH A 16 416 444 HOH HOH . D 4 HOH A 17 417 442 HOH HOH . D 4 HOH A 18 418 420 HOH HOH . D 4 HOH A 19 419 439 HOH HOH . D 4 HOH A 20 420 452 HOH HOH . D 4 HOH A 21 421 440 HOH HOH . D 4 HOH A 22 422 417 HOH HOH . D 4 HOH A 23 423 455 HOH HOH . D 4 HOH A 24 424 423 HOH HOH . D 4 HOH A 25 425 428 HOH HOH . D 4 HOH A 26 426 411 HOH HOH . D 4 HOH A 27 427 404 HOH HOH . D 4 HOH A 28 428 430 HOH HOH . D 4 HOH A 29 429 425 HOH HOH . D 4 HOH A 30 430 427 HOH HOH . D 4 HOH A 31 431 459 HOH HOH . D 4 HOH A 32 432 457 HOH HOH . D 4 HOH A 33 433 532 HOH HOH . D 4 HOH A 34 434 414 HOH HOH . D 4 HOH A 35 435 500 HOH HOH . D 4 HOH A 36 436 410 HOH HOH . D 4 HOH A 37 437 453 HOH HOH . D 4 HOH A 38 438 460 HOH HOH . D 4 HOH A 39 439 406 HOH HOH . D 4 HOH A 40 440 479 HOH HOH . D 4 HOH A 41 441 512 HOH HOH . D 4 HOH A 42 442 582 HOH HOH . D 4 HOH A 43 443 436 HOH HOH . D 4 HOH A 44 444 515 HOH HOH . D 4 HOH A 45 445 538 HOH HOH . D 4 HOH A 46 446 463 HOH HOH . D 4 HOH A 47 447 447 HOH HOH . D 4 HOH A 48 448 472 HOH HOH . D 4 HOH A 49 449 451 HOH HOH . D 4 HOH A 50 450 465 HOH HOH . D 4 HOH A 51 451 461 HOH HOH . D 4 HOH A 52 452 483 HOH HOH . D 4 HOH A 53 453 468 HOH HOH . D 4 HOH A 54 454 489 HOH HOH . D 4 HOH A 55 455 431 HOH HOH . D 4 HOH A 56 456 467 HOH HOH . D 4 HOH A 57 457 476 HOH HOH . D 4 HOH A 58 458 464 HOH HOH . D 4 HOH A 59 459 562 HOH HOH . D 4 HOH A 60 460 458 HOH HOH . D 4 HOH A 61 461 462 HOH HOH . D 4 HOH A 62 462 466 HOH HOH . D 4 HOH A 63 463 450 HOH HOH . D 4 HOH A 64 464 488 HOH HOH . D 4 HOH A 65 465 475 HOH HOH . D 4 HOH A 66 466 470 HOH HOH . D 4 HOH A 67 467 441 HOH HOH . D 4 HOH A 68 468 435 HOH HOH . D 4 HOH A 69 469 485 HOH HOH . D 4 HOH A 70 470 533 HOH HOH . D 4 HOH A 71 471 523 HOH HOH . D 4 HOH A 72 472 521 HOH HOH . D 4 HOH A 73 473 478 HOH HOH . D 4 HOH A 74 474 490 HOH HOH . D 4 HOH A 75 475 486 HOH HOH . D 4 HOH A 76 476 7 HOH HOH . D 4 HOH A 77 477 589 HOH HOH . D 4 HOH A 78 478 534 HOH HOH . D 4 HOH A 79 479 505 HOH HOH . D 4 HOH A 80 480 493 HOH HOH . D 4 HOH A 81 481 471 HOH HOH . D 4 HOH A 82 482 530 HOH HOH . D 4 HOH A 83 483 597 HOH HOH . D 4 HOH A 84 484 513 HOH HOH . D 4 HOH A 85 485 509 HOH HOH . D 4 HOH A 86 486 454 HOH HOH . D 4 HOH A 87 487 495 HOH HOH . D 4 HOH A 88 488 610 HOH HOH . D 4 HOH A 89 489 527 HOH HOH . D 4 HOH A 90 490 484 HOH HOH . D 4 HOH A 91 491 501 HOH HOH . D 4 HOH A 92 492 480 HOH HOH . D 4 HOH A 93 493 469 HOH HOH . D 4 HOH A 94 494 508 HOH HOH . D 4 HOH A 95 495 477 HOH HOH . D 4 HOH A 96 496 492 HOH HOH . D 4 HOH A 97 497 528 HOH HOH . D 4 HOH A 98 498 522 HOH HOH . D 4 HOH A 99 499 518 HOH HOH . D 4 HOH A 100 500 437 HOH HOH . D 4 HOH A 101 501 499 HOH HOH . D 4 HOH A 102 502 519 HOH HOH . D 4 HOH A 103 503 503 HOH HOH . D 4 HOH A 104 504 511 HOH HOH . D 4 HOH A 105 505 537 HOH HOH . D 4 HOH A 106 506 491 HOH HOH . D 4 HOH A 107 507 555 HOH HOH . D 4 HOH A 108 508 551 HOH HOH . D 4 HOH A 109 509 446 HOH HOH . D 4 HOH A 110 510 494 HOH HOH . D 4 HOH A 111 511 536 HOH HOH . D 4 HOH A 112 512 525 HOH HOH . D 4 HOH A 113 513 418 HOH HOH . D 4 HOH A 114 514 524 HOH HOH . D 4 HOH A 115 515 429 HOH HOH . D 4 HOH A 116 516 502 HOH HOH . D 4 HOH A 117 517 529 HOH HOH . D 4 HOH A 118 518 548 HOH HOH . D 4 HOH A 119 519 547 HOH HOH . D 4 HOH A 120 520 539 HOH HOH . D 4 HOH A 121 521 565 HOH HOH . D 4 HOH A 122 522 409 HOH HOH . D 4 HOH A 123 523 496 HOH HOH . D 4 HOH A 124 524 542 HOH HOH . D 4 HOH A 125 525 554 HOH HOH . D 4 HOH A 126 526 432 HOH HOH . D 4 HOH A 127 527 563 HOH HOH . D 4 HOH A 128 528 504 HOH HOH . D 4 HOH A 129 529 543 HOH HOH . D 4 HOH A 130 530 487 HOH HOH . D 4 HOH A 131 531 531 HOH HOH . D 4 HOH A 132 532 535 HOH HOH . D 4 HOH A 133 533 552 HOH HOH . D 4 HOH A 134 534 550 HOH HOH . D 4 HOH A 135 535 510 HOH HOH . D 4 HOH A 136 536 571 HOH HOH . D 4 HOH A 137 537 520 HOH HOH . D 4 HOH A 138 538 448 HOH HOH . D 4 HOH A 139 539 514 HOH HOH . D 4 HOH A 140 540 564 HOH HOH . D 4 HOH A 141 541 456 HOH HOH . D 4 HOH A 142 542 567 HOH HOH . D 4 HOH A 143 543 557 HOH HOH . D 4 HOH A 144 544 412 HOH HOH . D 4 HOH A 145 545 498 HOH HOH . D 4 HOH A 146 546 545 HOH HOH . D 4 HOH A 147 547 544 HOH HOH . D 4 HOH A 148 548 553 HOH HOH . D 4 HOH A 149 549 619 HOH HOH . D 4 HOH A 150 550 556 HOH HOH . D 4 HOH A 151 551 566 HOH HOH . D 4 HOH A 152 552 474 HOH HOH . D 4 HOH A 153 553 576 HOH HOH . D 4 HOH A 154 554 578 HOH HOH . D 4 HOH A 155 555 605 HOH HOH . D 4 HOH A 156 556 549 HOH HOH . D 4 HOH A 157 557 517 HOH HOH . D 4 HOH A 158 558 573 HOH HOH . D 4 HOH A 159 559 585 HOH HOH . D 4 HOH A 160 560 623 HOH HOH . D 4 HOH A 161 561 583 HOH HOH . D 4 HOH A 162 562 599 HOH HOH . D 4 HOH A 163 563 580 HOH HOH . D 4 HOH A 164 564 577 HOH HOH . D 4 HOH A 165 565 595 HOH HOH . D 4 HOH A 166 566 572 HOH HOH . D 4 HOH A 167 567 546 HOH HOH . D 4 HOH A 168 568 607 HOH HOH . D 4 HOH A 169 569 602 HOH HOH . D 4 HOH A 170 570 586 HOH HOH . D 4 HOH A 171 571 600 HOH HOH . D 4 HOH A 172 572 559 HOH HOH . D 4 HOH A 173 573 579 HOH HOH . D 4 HOH A 174 574 541 HOH HOH . D 4 HOH A 175 575 601 HOH HOH . D 4 HOH A 176 576 592 HOH HOH . D 4 HOH A 177 577 594 HOH HOH . D 4 HOH A 178 578 590 HOH HOH . D 4 HOH A 179 579 615 HOH HOH . D 4 HOH A 180 580 561 HOH HOH . D 4 HOH A 181 581 622 HOH HOH . D 4 HOH A 182 582 588 HOH HOH . D 4 HOH A 183 583 598 HOH HOH . D 4 HOH A 184 584 612 HOH HOH . D 4 HOH A 185 585 608 HOH HOH . D 4 HOH A 186 586 591 HOH HOH . D 4 HOH A 187 587 587 HOH HOH . D 4 HOH A 188 588 613 HOH HOH . D 4 HOH A 189 589 540 HOH HOH . D 4 HOH A 190 590 584 HOH HOH . D 4 HOH A 191 591 614 HOH HOH . D 4 HOH A 192 592 568 HOH HOH . D 4 HOH A 193 593 603 HOH HOH . D 4 HOH A 194 594 604 HOH HOH . D 4 HOH A 195 595 626 HOH HOH . D 4 HOH A 196 596 558 HOH HOH . D 4 HOH A 197 597 596 HOH HOH . D 4 HOH A 198 598 617 HOH HOH . D 4 HOH A 199 599 609 HOH HOH . D 4 HOH A 200 600 606 HOH HOH . D 4 HOH A 201 601 616 HOH HOH . D 4 HOH A 202 602 620 HOH HOH . D 4 HOH A 203 603 593 HOH HOH . D 4 HOH A 204 604 560 HOH HOH . D 4 HOH A 205 605 611 HOH HOH . D 4 HOH A 206 606 482 HOH HOH . D 4 HOH A 207 607 618 HOH HOH . D 4 HOH A 208 608 625 HOH HOH . D 4 HOH A 209 609 624 HOH HOH . D 4 HOH A 210 610 633 HOH HOH . D 4 HOH A 211 611 621 HOH HOH . D 4 HOH A 212 612 636 HOH HOH . D 4 HOH A 213 613 635 HOH HOH . D 4 HOH A 214 614 645 HOH HOH . D 4 HOH A 215 615 575 HOH HOH . D 4 HOH A 216 616 639 HOH HOH . D 4 HOH A 217 617 630 HOH HOH . D 4 HOH A 218 618 643 HOH HOH . D 4 HOH A 219 619 641 HOH HOH . D 4 HOH A 220 620 638 HOH HOH . D 4 HOH A 221 621 627 HOH HOH . D 4 HOH A 222 622 644 HOH HOH . D 4 HOH A 223 623 640 HOH HOH . D 4 HOH A 224 624 416 HOH HOH . D 4 HOH A 225 625 648 HOH HOH . D 4 HOH A 226 626 646 HOH HOH . D 4 HOH A 227 627 637 HOH HOH . D 4 HOH A 228 628 632 HOH HOH . D 4 HOH A 229 629 647 HOH HOH . D 4 HOH A 230 630 650 HOH HOH . D 4 HOH A 231 631 653 HOH HOH . D 4 HOH A 232 632 651 HOH HOH . D 4 HOH A 233 633 649 HOH HOH . D 4 HOH A 234 634 652 HOH HOH . D 4 HOH A 235 635 657 HOH HOH . D 4 HOH A 236 636 656 HOH HOH . D 4 HOH A 237 637 659 HOH HOH . D 4 HOH A 238 638 4 HOH HOH . D 4 HOH A 239 639 662 HOH HOH . D 4 HOH A 240 640 658 HOH HOH . D 4 HOH A 241 641 663 HOH HOH . D 4 HOH A 242 642 661 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3NT . . . C 3 17.801 6.378 14.171 0.5 19.18 ? C1 3NT 302 A 1 HETATM 2 C C2 3NT . . . C 3 17.461 5.377 15.028 0.5 15.42 ? C2 3NT 302 A 1 HETATM 3 C C3 3NT . . . C 3 16.151 5.165 15.445 0.5 18.99 ? C3 3NT 302 A 1 HETATM 4 C C4 3NT . . . C 3 15.147 5.991 15.001 0.5 18.01 ? C4 3NT 302 A 1 HETATM 5 C C5 3NT . . . C 3 15.496 7.004 14.169 0.5 19.47 ? C5 3NT 302 A 1 HETATM 6 C C6 3NT . . . C 3 16.785 7.201 13.737 0.5 20.86 ? C6 3NT 302 A 1 HETATM 7 C C7 3NT . . . C 3 19.219 6.591 13.773 0.5 20.35 ? C7 3NT 302 A 1 HETATM 8 N N3 3NT . . . C 3 15.887 4.133 16.347 0.5 22.81 ? N3 3NT 302 A 1 HETATM 9 O O1N 3NT . . . C 3 14.723 3.833 16.79 0.5 23.16 ? O1N 3NT 302 A 1 HETATM 10 O O2N 3NT . . . C 3 16.963 3.304 16.745 0.5 20.82 ? O2N 3NT 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #