data_7Y2R
#
_model_server_result.job_id            8geahvHSNh0LzSdBE4Y9Rw 
_model_server_result.datetime_utc      '2024-11-07 21:31:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7Y2R 
#
_exptl.entry_id    7Y2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.06 
_cell.angle_gamma         90 
_cell.entry_id            7Y2R 
_cell.length_a            42.41 
_cell.length_b            41.131 
_cell.length_c            71.71 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N HIS 4 A HIS 4 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc2 A ND1 HIS 4 A HIS 4 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc3 A NE2 HIS 94 A HIS 94 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc4 A NE2 HIS 96 A HIS 96 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc5 A ND1 HIS 119 A HIS 119 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc6 B NI NI . A NI 301 1_555 D O1 MNP . A MNP 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc7 B NI NI . A NI 301 1_555 D O1 MNP . A MNP 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.118 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Y2R 
_atom_sites.fract_transf_matrix[1][1]    0.023579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005904 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024313 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NI A 1 301 302 NI NI . 
C 2 NI A 1 302 303 NI NI . 
D 3 MNP A 1 303 1 MNP MNP . 
E 4 HOH A 1 401 401 HOH HOH . 
E 4 HOH A 2 402 440 HOH HOH . 
E 4 HOH A 3 403 436 HOH HOH . 
E 4 HOH A 4 404 433 HOH HOH . 
E 4 HOH A 5 405 405 HOH HOH . 
E 4 HOH A 6 406 503 HOH HOH . 
E 4 HOH A 7 407 408 HOH HOH . 
E 4 HOH A 8 408 518 HOH HOH . 
E 4 HOH A 9 409 410 HOH HOH . 
E 4 HOH A 10 410 513 HOH HOH . 
E 4 HOH A 11 411 422 HOH HOH . 
E 4 HOH A 12 412 421 HOH HOH . 
E 4 HOH A 13 413 480 HOH HOH . 
E 4 HOH A 14 414 430 HOH HOH . 
E 4 HOH A 15 415 414 HOH HOH . 
E 4 HOH A 16 416 470 HOH HOH . 
E 4 HOH A 17 417 448 HOH HOH . 
E 4 HOH A 18 418 417 HOH HOH . 
E 4 HOH A 19 419 445 HOH HOH . 
E 4 HOH A 20 420 406 HOH HOH . 
E 4 HOH A 21 421 424 HOH HOH . 
E 4 HOH A 22 422 464 HOH HOH . 
E 4 HOH A 23 423 411 HOH HOH . 
E 4 HOH A 24 424 454 HOH HOH . 
E 4 HOH A 25 425 425 HOH HOH . 
E 4 HOH A 26 426 449 HOH HOH . 
E 4 HOH A 27 427 432 HOH HOH . 
E 4 HOH A 28 428 426 HOH HOH . 
E 4 HOH A 29 429 412 HOH HOH . 
E 4 HOH A 30 430 457 HOH HOH . 
E 4 HOH A 31 431 461 HOH HOH . 
E 4 HOH A 32 432 428 HOH HOH . 
E 4 HOH A 33 433 416 HOH HOH . 
E 4 HOH A 34 434 437 HOH HOH . 
E 4 HOH A 35 435 450 HOH HOH . 
E 4 HOH A 36 436 453 HOH HOH . 
E 4 HOH A 37 437 418 HOH HOH . 
E 4 HOH A 38 438 491 HOH HOH . 
E 4 HOH A 39 439 423 HOH HOH . 
E 4 HOH A 40 440 431 HOH HOH . 
E 4 HOH A 41 441 459 HOH HOH . 
E 4 HOH A 42 442 409 HOH HOH . 
E 4 HOH A 43 443 447 HOH HOH . 
E 4 HOH A 44 444 468 HOH HOH . 
E 4 HOH A 45 445 471 HOH HOH . 
E 4 HOH A 46 446 451 HOH HOH . 
E 4 HOH A 47 447 438 HOH HOH . 
E 4 HOH A 48 448 475 HOH HOH . 
E 4 HOH A 49 449 458 HOH HOH . 
E 4 HOH A 50 450 477 HOH HOH . 
E 4 HOH A 51 451 462 HOH HOH . 
E 4 HOH A 52 452 452 HOH HOH . 
E 4 HOH A 53 453 529 HOH HOH . 
E 4 HOH A 54 454 562 HOH HOH . 
E 4 HOH A 55 455 463 HOH HOH . 
E 4 HOH A 56 456 466 HOH HOH . 
E 4 HOH A 57 457 473 HOH HOH . 
E 4 HOH A 58 458 3 HOH HOH . 
E 4 HOH A 59 459 535 HOH HOH . 
E 4 HOH A 60 460 456 HOH HOH . 
E 4 HOH A 61 461 537 HOH HOH . 
E 4 HOH A 62 462 478 HOH HOH . 
E 4 HOH A 63 463 460 HOH HOH . 
E 4 HOH A 64 464 467 HOH HOH . 
E 4 HOH A 65 465 481 HOH HOH . 
E 4 HOH A 66 466 434 HOH HOH . 
E 4 HOH A 67 467 490 HOH HOH . 
E 4 HOH A 68 468 446 HOH HOH . 
E 4 HOH A 69 469 525 HOH HOH . 
E 4 HOH A 70 470 509 HOH HOH . 
E 4 HOH A 71 471 482 HOH HOH . 
E 4 HOH A 72 472 441 HOH HOH . 
E 4 HOH A 73 473 570 HOH HOH . 
E 4 HOH A 74 474 479 HOH HOH . 
E 4 HOH A 75 475 493 HOH HOH . 
E 4 HOH A 76 476 516 HOH HOH . 
E 4 HOH A 77 477 484 HOH HOH . 
E 4 HOH A 78 478 488 HOH HOH . 
E 4 HOH A 79 479 489 HOH HOH . 
E 4 HOH A 80 480 486 HOH HOH . 
E 4 HOH A 81 481 624 HOH HOH . 
E 4 HOH A 82 482 483 HOH HOH . 
E 4 HOH A 83 483 521 HOH HOH . 
E 4 HOH A 84 484 499 HOH HOH . 
E 4 HOH A 85 485 443 HOH HOH . 
E 4 HOH A 86 486 506 HOH HOH . 
E 4 HOH A 87 487 476 HOH HOH . 
E 4 HOH A 88 488 444 HOH HOH . 
E 4 HOH A 89 489 609 HOH HOH . 
E 4 HOH A 90 490 469 HOH HOH . 
E 4 HOH A 91 491 520 HOH HOH . 
E 4 HOH A 92 492 524 HOH HOH . 
E 4 HOH A 93 493 528 HOH HOH . 
E 4 HOH A 94 494 496 HOH HOH . 
E 4 HOH A 95 495 494 HOH HOH . 
E 4 HOH A 96 496 501 HOH HOH . 
E 4 HOH A 97 497 485 HOH HOH . 
E 4 HOH A 98 498 511 HOH HOH . 
E 4 HOH A 99 499 560 HOH HOH . 
E 4 HOH A 100 500 487 HOH HOH . 
E 4 HOH A 101 501 527 HOH HOH . 
E 4 HOH A 102 502 514 HOH HOH . 
E 4 HOH A 103 503 474 HOH HOH . 
E 4 HOH A 104 504 498 HOH HOH . 
E 4 HOH A 105 505 508 HOH HOH . 
E 4 HOH A 106 506 533 HOH HOH . 
E 4 HOH A 107 507 602 HOH HOH . 
E 4 HOH A 108 508 587 HOH HOH . 
E 4 HOH A 109 509 507 HOH HOH . 
E 4 HOH A 110 510 1 HOH HOH . 
E 4 HOH A 111 511 541 HOH HOH . 
E 4 HOH A 112 512 551 HOH HOH . 
E 4 HOH A 113 513 531 HOH HOH . 
E 4 HOH A 114 514 500 HOH HOH . 
E 4 HOH A 115 515 548 HOH HOH . 
E 4 HOH A 116 516 568 HOH HOH . 
E 4 HOH A 117 517 504 HOH HOH . 
E 4 HOH A 118 518 604 HOH HOH . 
E 4 HOH A 119 519 415 HOH HOH . 
E 4 HOH A 120 520 512 HOH HOH . 
E 4 HOH A 121 521 616 HOH HOH . 
E 4 HOH A 122 522 502 HOH HOH . 
E 4 HOH A 123 523 534 HOH HOH . 
E 4 HOH A 124 524 553 HOH HOH . 
E 4 HOH A 125 525 603 HOH HOH . 
E 4 HOH A 126 526 542 HOH HOH . 
E 4 HOH A 127 527 597 HOH HOH . 
E 4 HOH A 128 528 510 HOH HOH . 
E 4 HOH A 129 529 547 HOH HOH . 
E 4 HOH A 130 530 495 HOH HOH . 
E 4 HOH A 131 531 567 HOH HOH . 
E 4 HOH A 132 532 563 HOH HOH . 
E 4 HOH A 133 533 536 HOH HOH . 
E 4 HOH A 134 534 420 HOH HOH . 
E 4 HOH A 135 535 538 HOH HOH . 
E 4 HOH A 136 536 569 HOH HOH . 
E 4 HOH A 137 537 2 HOH HOH . 
E 4 HOH A 138 538 558 HOH HOH . 
E 4 HOH A 139 539 588 HOH HOH . 
E 4 HOH A 140 540 550 HOH HOH . 
E 4 HOH A 141 541 634 HOH HOH . 
E 4 HOH A 142 542 455 HOH HOH . 
E 4 HOH A 143 543 583 HOH HOH . 
E 4 HOH A 144 544 517 HOH HOH . 
E 4 HOH A 145 545 532 HOH HOH . 
E 4 HOH A 146 546 557 HOH HOH . 
E 4 HOH A 147 547 539 HOH HOH . 
E 4 HOH A 148 548 543 HOH HOH . 
E 4 HOH A 149 549 561 HOH HOH . 
E 4 HOH A 150 550 593 HOH HOH . 
E 4 HOH A 151 551 556 HOH HOH . 
E 4 HOH A 152 552 566 HOH HOH . 
E 4 HOH A 153 553 559 HOH HOH . 
E 4 HOH A 154 554 522 HOH HOH . 
E 4 HOH A 155 555 552 HOH HOH . 
E 4 HOH A 156 556 554 HOH HOH . 
E 4 HOH A 157 557 617 HOH HOH . 
E 4 HOH A 158 558 545 HOH HOH . 
E 4 HOH A 159 559 598 HOH HOH . 
E 4 HOH A 160 560 581 HOH HOH . 
E 4 HOH A 161 561 615 HOH HOH . 
E 4 HOH A 162 562 549 HOH HOH . 
E 4 HOH A 163 563 586 HOH HOH . 
E 4 HOH A 164 564 578 HOH HOH . 
E 4 HOH A 165 565 497 HOH HOH . 
E 4 HOH A 166 566 555 HOH HOH . 
E 4 HOH A 167 567 572 HOH HOH . 
E 4 HOH A 168 568 402 HOH HOH . 
E 4 HOH A 169 569 622 HOH HOH . 
E 4 HOH A 170 570 574 HOH HOH . 
E 4 HOH A 171 571 577 HOH HOH . 
E 4 HOH A 172 572 589 HOH HOH . 
E 4 HOH A 173 573 579 HOH HOH . 
E 4 HOH A 174 574 596 HOH HOH . 
E 4 HOH A 175 575 544 HOH HOH . 
E 4 HOH A 176 576 591 HOH HOH . 
E 4 HOH A 177 577 585 HOH HOH . 
E 4 HOH A 178 578 592 HOH HOH . 
E 4 HOH A 179 579 607 HOH HOH . 
E 4 HOH A 180 580 614 HOH HOH . 
E 4 HOH A 181 581 573 HOH HOH . 
E 4 HOH A 182 582 492 HOH HOH . 
E 4 HOH A 183 583 620 HOH HOH . 
E 4 HOH A 184 584 595 HOH HOH . 
E 4 HOH A 185 585 600 HOH HOH . 
E 4 HOH A 186 586 526 HOH HOH . 
E 4 HOH A 187 587 594 HOH HOH . 
E 4 HOH A 188 588 564 HOH HOH . 
E 4 HOH A 189 589 612 HOH HOH . 
E 4 HOH A 190 590 611 HOH HOH . 
E 4 HOH A 191 591 606 HOH HOH . 
E 4 HOH A 192 592 639 HOH HOH . 
E 4 HOH A 193 593 608 HOH HOH . 
E 4 HOH A 194 594 623 HOH HOH . 
E 4 HOH A 195 595 599 HOH HOH . 
E 4 HOH A 196 596 618 HOH HOH . 
E 4 HOH A 197 597 610 HOH HOH . 
E 4 HOH A 198 598 576 HOH HOH . 
E 4 HOH A 199 599 582 HOH HOH . 
E 4 HOH A 200 600 626 HOH HOH . 
E 4 HOH A 201 601 621 HOH HOH . 
E 4 HOH A 202 602 575 HOH HOH . 
E 4 HOH A 203 603 435 HOH HOH . 
E 4 HOH A 204 604 629 HOH HOH . 
E 4 HOH A 205 605 647 HOH HOH . 
E 4 HOH A 206 606 625 HOH HOH . 
E 4 HOH A 207 607 631 HOH HOH . 
E 4 HOH A 208 608 643 HOH HOH . 
E 4 HOH A 209 609 638 HOH HOH . 
E 4 HOH A 210 610 601 HOH HOH . 
E 4 HOH A 211 611 641 HOH HOH . 
E 4 HOH A 212 612 628 HOH HOH . 
E 4 HOH A 213 613 637 HOH HOH . 
E 4 HOH A 214 614 650 HOH HOH . 
E 4 HOH A 215 615 636 HOH HOH . 
E 4 HOH A 216 616 632 HOH HOH . 
E 4 HOH A 217 617 648 HOH HOH . 
E 4 HOH A 218 618 656 HOH HOH . 
E 4 HOH A 219 619 653 HOH HOH . 
E 4 HOH A 220 620 649 HOH HOH . 
E 4 HOH A 221 621 660 HOH HOH . 
E 4 HOH A 222 622 654 HOH HOH . 
E 4 HOH A 223 623 661 HOH HOH . 
E 4 HOH A 224 624 659 HOH HOH . 
E 4 HOH A 225 625 666 HOH HOH . 
E 4 HOH A 226 626 565 HOH HOH . 
E 4 HOH A 227 627 657 HOH HOH . 
E 4 HOH A 228 628 413 HOH HOH . 
E 4 HOH A 229 629 665 HOH HOH . 
E 4 HOH A 230 630 658 HOH HOH . 
E 4 HOH A 231 631 664 HOH HOH . 
E 4 HOH A 232 632 663 HOH HOH . 
E 4 HOH A 233 633 668 HOH HOH . 
E 4 HOH A 234 634 670 HOH HOH . 
E 4 HOH A 235 635 667 HOH HOH . 
E 4 HOH A 236 636 671 HOH HOH . 
E 4 HOH A 237 637 673 HOH HOH . 
E 4 HOH A 238 638 674 HOH HOH . 
E 4 HOH A 239 639 672 HOH HOH . 
E 4 HOH A 240 640 678 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.746 
_atom_site.Cartn_y               3.997 
_atom_site.Cartn_z               8.869 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.65 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#