data_7Y2U # _model_server_result.job_id kmI9TbD8aTuU1myh2r_8JQ _model_server_result.datetime_utc '2024-11-07 05:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y2u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7Y2U # _exptl.entry_id 7Y2U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.05 _cell.angle_gamma 90 _cell.entry_id 7Y2U _cell.length_a 42.47 _cell.length_b 41.187 _cell.length_c 71.855 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y2U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N HIS 4 A HIS 4 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A ND1 HIS 4 A HIS 4 1_555 C NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc3 A NE2 HIS 94 A HIS 94 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 A NE2 HIS 96 A HIS 96 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc5 A ND1 HIS 119 A HIS 119 1_555 B NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc6 B NI NI . A NI 301 1_555 D O1 MNP . A MNP 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.063 ? metalc ? metalc7 B NI NI . A NI 301 1_555 D O1 MNP . A MNP 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.097 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y2U _atom_sites.fract_transf_matrix[1][1] 0.023546 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 301 302 NI NI . C 2 NI A 1 302 303 NI NI . D 3 MNP A 1 303 1 MNP MNP . E 4 HOH A 1 401 401 HOH HOH . E 4 HOH A 2 402 440 HOH HOH . E 4 HOH A 3 403 436 HOH HOH . E 4 HOH A 4 404 408 HOH HOH . E 4 HOH A 5 405 433 HOH HOH . E 4 HOH A 6 406 503 HOH HOH . E 4 HOH A 7 407 405 HOH HOH . E 4 HOH A 8 408 480 HOH HOH . E 4 HOH A 9 409 470 HOH HOH . E 4 HOH A 10 410 414 HOH HOH . E 4 HOH A 11 411 430 HOH HOH . E 4 HOH A 12 412 422 HOH HOH . E 4 HOH A 13 413 518 HOH HOH . E 4 HOH A 14 414 448 HOH HOH . E 4 HOH A 15 415 421 HOH HOH . E 4 HOH A 16 416 424 HOH HOH . E 4 HOH A 17 417 513 HOH HOH . E 4 HOH A 18 418 445 HOH HOH . E 4 HOH A 19 419 406 HOH HOH . E 4 HOH A 20 420 449 HOH HOH . E 4 HOH A 21 421 417 HOH HOH . E 4 HOH A 22 422 410 HOH HOH . E 4 HOH A 23 423 426 HOH HOH . E 4 HOH A 24 424 464 HOH HOH . E 4 HOH A 25 425 459 HOH HOH . E 4 HOH A 26 426 461 HOH HOH . E 4 HOH A 27 427 412 HOH HOH . E 4 HOH A 28 428 457 HOH HOH . E 4 HOH A 29 429 418 HOH HOH . E 4 HOH A 30 430 454 HOH HOH . E 4 HOH A 31 431 446 HOH HOH . E 4 HOH A 32 432 432 HOH HOH . E 4 HOH A 33 433 437 HOH HOH . E 4 HOH A 34 434 425 HOH HOH . E 4 HOH A 35 435 450 HOH HOH . E 4 HOH A 36 436 416 HOH HOH . E 4 HOH A 37 437 447 HOH HOH . E 4 HOH A 38 438 431 HOH HOH . E 4 HOH A 39 439 428 HOH HOH . E 4 HOH A 40 440 535 HOH HOH . E 4 HOH A 41 441 453 HOH HOH . E 4 HOH A 42 442 452 HOH HOH . E 4 HOH A 43 443 477 HOH HOH . E 4 HOH A 44 444 475 HOH HOH . E 4 HOH A 45 445 491 HOH HOH . E 4 HOH A 46 446 423 HOH HOH . E 4 HOH A 47 447 438 HOH HOH . E 4 HOH A 48 448 468 HOH HOH . E 4 HOH A 49 449 466 HOH HOH . E 4 HOH A 50 450 463 HOH HOH . E 4 HOH A 51 451 409 HOH HOH . E 4 HOH A 52 452 489 HOH HOH . E 4 HOH A 53 453 411 HOH HOH . E 4 HOH A 54 454 473 HOH HOH . E 4 HOH A 55 455 467 HOH HOH . E 4 HOH A 56 456 529 HOH HOH . E 4 HOH A 57 457 462 HOH HOH . E 4 HOH A 58 458 460 HOH HOH . E 4 HOH A 59 459 490 HOH HOH . E 4 HOH A 60 460 471 HOH HOH . E 4 HOH A 61 461 441 HOH HOH . E 4 HOH A 62 462 570 HOH HOH . E 4 HOH A 63 463 478 HOH HOH . E 4 HOH A 64 464 458 HOH HOH . E 4 HOH A 65 465 488 HOH HOH . E 4 HOH A 66 466 456 HOH HOH . E 4 HOH A 67 467 481 HOH HOH . E 4 HOH A 68 468 516 HOH HOH . E 4 HOH A 69 469 434 HOH HOH . E 4 HOH A 70 470 493 HOH HOH . E 4 HOH A 71 471 537 HOH HOH . E 4 HOH A 72 472 3 HOH HOH . E 4 HOH A 73 473 499 HOH HOH . E 4 HOH A 74 474 509 HOH HOH . E 4 HOH A 75 475 451 HOH HOH . E 4 HOH A 76 476 479 HOH HOH . E 4 HOH A 77 477 476 HOH HOH . E 4 HOH A 78 478 443 HOH HOH . E 4 HOH A 79 479 525 HOH HOH . E 4 HOH A 80 480 617 HOH HOH . E 4 HOH A 81 481 469 HOH HOH . E 4 HOH A 82 482 507 HOH HOH . E 4 HOH A 83 483 624 HOH HOH . E 4 HOH A 84 484 484 HOH HOH . E 4 HOH A 85 485 506 HOH HOH . E 4 HOH A 86 486 495 HOH HOH . E 4 HOH A 87 487 602 HOH HOH . E 4 HOH A 88 488 483 HOH HOH . E 4 HOH A 89 489 482 HOH HOH . E 4 HOH A 90 490 560 HOH HOH . E 4 HOH A 91 491 587 HOH HOH . E 4 HOH A 92 492 487 HOH HOH . E 4 HOH A 93 493 501 HOH HOH . E 4 HOH A 94 494 444 HOH HOH . E 4 HOH A 95 495 521 HOH HOH . E 4 HOH A 96 496 486 HOH HOH . E 4 HOH A 97 497 485 HOH HOH . E 4 HOH A 98 498 562 HOH HOH . E 4 HOH A 99 499 1 HOH HOH . E 4 HOH A 100 500 514 HOH HOH . E 4 HOH A 101 501 2 HOH HOH . E 4 HOH A 102 502 524 HOH HOH . E 4 HOH A 103 503 420 HOH HOH . E 4 HOH A 104 504 498 HOH HOH . E 4 HOH A 105 505 511 HOH HOH . E 4 HOH A 106 506 604 HOH HOH . E 4 HOH A 107 507 520 HOH HOH . E 4 HOH A 108 508 533 HOH HOH . E 4 HOH A 109 509 568 HOH HOH . E 4 HOH A 110 510 496 HOH HOH . E 4 HOH A 111 511 528 HOH HOH . E 4 HOH A 112 512 474 HOH HOH . E 4 HOH A 113 513 532 HOH HOH . E 4 HOH A 114 514 500 HOH HOH . E 4 HOH A 115 515 504 HOH HOH . E 4 HOH A 116 516 494 HOH HOH . E 4 HOH A 117 517 609 HOH HOH . E 4 HOH A 118 518 502 HOH HOH . E 4 HOH A 119 519 541 HOH HOH . E 4 HOH A 120 520 508 HOH HOH . E 4 HOH A 121 521 531 HOH HOH . E 4 HOH A 122 522 527 HOH HOH . E 4 HOH A 123 523 551 HOH HOH . E 4 HOH A 124 524 542 HOH HOH . E 4 HOH A 125 525 553 HOH HOH . E 4 HOH A 126 526 510 HOH HOH . E 4 HOH A 127 527 512 HOH HOH . E 4 HOH A 128 528 538 HOH HOH . E 4 HOH A 129 529 534 HOH HOH . E 4 HOH A 130 530 547 HOH HOH . E 4 HOH A 131 531 558 HOH HOH . E 4 HOH A 132 532 569 HOH HOH . E 4 HOH A 133 533 616 HOH HOH . E 4 HOH A 134 534 603 HOH HOH . E 4 HOH A 135 535 563 HOH HOH . E 4 HOH A 136 536 548 HOH HOH . E 4 HOH A 137 537 543 HOH HOH . E 4 HOH A 138 538 536 HOH HOH . E 4 HOH A 139 539 517 HOH HOH . E 4 HOH A 140 540 455 HOH HOH . E 4 HOH A 141 541 597 HOH HOH . E 4 HOH A 142 542 539 HOH HOH . E 4 HOH A 143 543 567 HOH HOH . E 4 HOH A 144 544 634 HOH HOH . E 4 HOH A 145 545 557 HOH HOH . E 4 HOH A 146 546 552 HOH HOH . E 4 HOH A 147 547 556 HOH HOH . E 4 HOH A 148 548 566 HOH HOH . E 4 HOH A 149 549 415 HOH HOH . E 4 HOH A 150 550 588 HOH HOH . E 4 HOH A 151 551 550 HOH HOH . E 4 HOH A 152 552 559 HOH HOH . E 4 HOH A 153 553 555 HOH HOH . E 4 HOH A 154 554 497 HOH HOH . E 4 HOH A 155 555 522 HOH HOH . E 4 HOH A 156 556 549 HOH HOH . E 4 HOH A 157 557 581 HOH HOH . E 4 HOH A 158 558 545 HOH HOH . E 4 HOH A 159 559 554 HOH HOH . E 4 HOH A 160 560 577 HOH HOH . E 4 HOH A 161 561 586 HOH HOH . E 4 HOH A 162 562 574 HOH HOH . E 4 HOH A 163 563 598 HOH HOH . E 4 HOH A 164 564 572 HOH HOH . E 4 HOH A 165 565 593 HOH HOH . E 4 HOH A 166 566 402 HOH HOH . E 4 HOH A 167 567 623 HOH HOH . E 4 HOH A 168 568 578 HOH HOH . E 4 HOH A 169 569 579 HOH HOH . E 4 HOH A 170 570 615 HOH HOH . E 4 HOH A 171 571 583 HOH HOH . E 4 HOH A 172 572 591 HOH HOH . E 4 HOH A 173 573 585 HOH HOH . E 4 HOH A 174 574 596 HOH HOH . E 4 HOH A 175 575 589 HOH HOH . E 4 HOH A 176 576 544 HOH HOH . E 4 HOH A 177 577 573 HOH HOH . E 4 HOH A 178 578 607 HOH HOH . E 4 HOH A 179 579 592 HOH HOH . E 4 HOH A 180 580 564 HOH HOH . E 4 HOH A 181 581 595 HOH HOH . E 4 HOH A 182 582 561 HOH HOH . E 4 HOH A 183 583 611 HOH HOH . E 4 HOH A 184 584 600 HOH HOH . E 4 HOH A 185 585 622 HOH HOH . E 4 HOH A 186 586 492 HOH HOH . E 4 HOH A 187 587 594 HOH HOH . E 4 HOH A 188 588 526 HOH HOH . E 4 HOH A 189 589 620 HOH HOH . E 4 HOH A 190 590 612 HOH HOH . E 4 HOH A 191 591 614 HOH HOH . E 4 HOH A 192 592 610 HOH HOH . E 4 HOH A 193 593 606 HOH HOH . E 4 HOH A 194 594 608 HOH HOH . E 4 HOH A 195 595 639 HOH HOH . E 4 HOH A 196 596 618 HOH HOH . E 4 HOH A 197 597 582 HOH HOH . E 4 HOH A 198 598 626 HOH HOH . E 4 HOH A 199 599 599 HOH HOH . E 4 HOH A 200 600 629 HOH HOH . E 4 HOH A 201 601 621 HOH HOH . E 4 HOH A 202 602 435 HOH HOH . E 4 HOH A 203 603 575 HOH HOH . E 4 HOH A 204 604 576 HOH HOH . E 4 HOH A 205 605 647 HOH HOH . E 4 HOH A 206 606 625 HOH HOH . E 4 HOH A 207 607 641 HOH HOH . E 4 HOH A 208 608 631 HOH HOH . E 4 HOH A 209 609 643 HOH HOH . E 4 HOH A 210 610 601 HOH HOH . E 4 HOH A 211 611 638 HOH HOH . E 4 HOH A 212 612 637 HOH HOH . E 4 HOH A 213 613 628 HOH HOH . E 4 HOH A 214 614 650 HOH HOH . E 4 HOH A 215 615 636 HOH HOH . E 4 HOH A 216 616 632 HOH HOH . E 4 HOH A 217 617 648 HOH HOH . E 4 HOH A 218 618 653 HOH HOH . E 4 HOH A 219 619 656 HOH HOH . E 4 HOH A 220 620 649 HOH HOH . E 4 HOH A 221 621 661 HOH HOH . E 4 HOH A 222 622 660 HOH HOH . E 4 HOH A 223 623 666 HOH HOH . E 4 HOH A 224 624 654 HOH HOH . E 4 HOH A 225 625 659 HOH HOH . E 4 HOH A 226 626 413 HOH HOH . E 4 HOH A 227 627 565 HOH HOH . E 4 HOH A 228 628 665 HOH HOH . E 4 HOH A 229 629 657 HOH HOH . E 4 HOH A 230 630 658 HOH HOH . E 4 HOH A 231 631 664 HOH HOH . E 4 HOH A 232 632 663 HOH HOH . E 4 HOH A 233 633 668 HOH HOH . E 4 HOH A 234 634 670 HOH HOH . E 4 HOH A 235 635 667 HOH HOH . E 4 HOH A 236 636 671 HOH HOH . E 4 HOH A 237 637 674 HOH HOH . E 4 HOH A 238 638 673 HOH HOH . E 4 HOH A 239 639 672 HOH HOH . E 4 HOH A 240 640 678 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 14.527 _atom_site.Cartn_y 0.17 _atom_site.Cartn_z 15.663 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 6.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 214 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #