data_7Y38
#
_model_server_result.job_id            hs4iafTk9dzvQLinPq1CzQ 
_model_server_result.datetime_utc      '2024-11-14 06:20:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y38 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"HA","auth_seq_id":1001}' 
#
_entry.id    7Y38 
#
_exptl.entry_id    7Y38 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Y38 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y38 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentadecameric 
_pdbx_struct_assembly.oligomeric_count      15 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 P N N 
? 5 S N N 
? 5 V N N 
? 5 Y N N 
? 5 BA N N 
? 5 EA N N 
? 5 HA N N 
? 5 KA N N 
? 5 NA N N 
? 5 QA N N 
? 5 TA N N 
? 5 WA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc2 A SG CYS 134 A CYS 134 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A SG CYS 141 A CYS 141 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc4 B NE2 HIS 79 B HIS 79 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc5 B OE1 GLU 129 B GLU 129 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc6 B SG CYS 134 B CYS 134 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc7 B SG CYS 141 B CYS 141 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc8 C NE2 HIS 79 C HIS 79 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc9 C SG CYS 134 C CYS 134 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc10 C SG CYS 141 C CYS 141 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc11 D NE2 HIS 79 D HIS 79 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc12 D OE2 GLU 129 D GLU 129 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc13 D SG CYS 134 D CYS 134 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc14 D SG CYS 141 D CYS 141 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc15 E NE2 HIS 79 E HIS 79 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc16 E SG CYS 134 E CYS 134 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc17 E SG CYS 141 E CYS 141 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc18 F NE2 HIS 79 F HIS 79 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc19 F OE2 GLU 129 F GLU 129 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc20 F SG CYS 134 F CYS 134 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc21 F SG CYS 141 F CYS 141 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc22 G NE2 HIS 79 G HIS 79 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc23 G SG CYS 134 G CYS 134 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc24 G SG CYS 141 G CYS 141 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc25 H NE2 HIS 79 H HIS 79 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc26 H SG CYS 134 H CYS 134 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc27 H SG CYS 141 H CYS 141 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc28 I NE2 HIS 79 I HIS 79 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc29 I OE1 GLU 129 I GLU 129 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc30 I SG CYS 134 I CYS 134 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc31 I SG CYS 141 I CYS 141 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc32 J NE2 HIS 79 J HIS 79 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc33 J SG CYS 134 J CYS 134 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc34 J SG CYS 141 J CYS 141 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc35 K NE2 HIS 79 K HIS 79 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc36 K SG CYS 134 K CYS 134 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc37 K SG CYS 141 K CYS 141 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc38 L NE2 HIS 79 L HIS 79 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc39 L SG CYS 134 L CYS 134 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc40 L SG CYS 141 L CYS 141 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Y38 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
P 5 ZN A 1 1001 1001 ZN ZN . 
Q 6 ATP A 1 1002 1002 ATP ATP . 
R 7 GTP A 1 1003 1003 GTP GTP . 
S 5 ZN B 1 1001 1001 ZN ZN . 
T 7 GTP B 1 1002 1002 GTP GTP . 
U 6 ATP B 1 1003 1003 ATP ATP . 
V 5 ZN C 1 1001 1001 ZN ZN . 
W 7 GTP C 1 1002 1002 GTP GTP . 
X 6 ATP C 1 1003 1003 ATP ATP . 
Y 5 ZN D 1 1001 1001 ZN ZN . 
Z 7 GTP D 1 1002 1002 GTP GTP . 
AA 6 ATP D 1 1003 1003 ATP ATP . 
BA 5 ZN E 1 1001 1001 ZN ZN . 
CA 7 GTP E 1 1002 1002 GTP GTP . 
DA 6 ATP E 1 1003 1003 ATP ATP . 
EA 5 ZN F 1 1001 1001 ZN ZN . 
FA 7 GTP F 1 1002 1002 GTP GTP . 
GA 6 ATP F 1 1003 1003 ATP ATP . 
HA 5 ZN G 1 1001 1001 ZN ZN . 
IA 6 ATP G 1 1002 1002 ATP ATP . 
JA 7 GTP G 1 1003 1003 GTP GTP . 
KA 5 ZN H 1 1001 1001 ZN ZN . 
LA 6 ATP H 1 1002 1002 ATP ATP . 
MA 7 GTP H 1 1003 1003 GTP GTP . 
NA 5 ZN I 1 1001 1001 ZN ZN . 
OA 6 ATP I 1 1002 1002 ATP ATP . 
PA 7 GTP I 1 1003 1003 GTP GTP . 
QA 5 ZN J 1 1001 1001 ZN ZN . 
RA 7 GTP J 1 1002 1002 GTP GTP . 
SA 6 ATP J 1 1003 1003 ATP ATP . 
TA 5 ZN K 1 1001 1001 ZN ZN . 
UA 6 ATP K 1 1002 1002 ATP ATP . 
VA 7 GTP K 1 1003 1003 GTP GTP . 
WA 5 ZN L 1 1001 1001 ZN ZN . 
XA 6 ATP L 1 1002 1002 ATP ATP . 
YA 7 GTP L 1 1003 1003 GTP GTP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         HA 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               217.517 
_atom_site.Cartn_y               300.784 
_atom_site.Cartn_z               185.033 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        187.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          G 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#