data_7Y38 # _model_server_result.job_id QVx_IqilTkZZFk9kvtPUbQ _model_server_result.datetime_utc '2024-11-14 06:11:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"OA","auth_seq_id":1002}' # _entry.id 7Y38 # _exptl.entry_id 7Y38 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y38 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 Q N N ? 6 U N N ? 6 X N N ? 6 AA N N ? 6 DA N N ? 6 GA N N ? 6 IA N N ? 6 LA N N ? 6 OA N N ? 6 SA N N ? 6 UA N N ? 6 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 79 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A SG CYS 134 A CYS 134 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A SG CYS 141 A CYS 141 1_555 P ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 B NE2 HIS 79 B HIS 79 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 B OE1 GLU 129 B GLU 129 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc6 B SG CYS 134 B CYS 134 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B SG CYS 141 B CYS 141 1_555 S ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc8 C NE2 HIS 79 C HIS 79 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 C SG CYS 134 C CYS 134 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc10 C SG CYS 141 C CYS 141 1_555 V ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc11 D NE2 HIS 79 D HIS 79 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 D OE2 GLU 129 D GLU 129 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc13 D SG CYS 134 D CYS 134 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 D SG CYS 141 D CYS 141 1_555 Y ZN ZN . D ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 E NE2 HIS 79 E HIS 79 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc16 E SG CYS 134 E CYS 134 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc17 E SG CYS 141 E CYS 141 1_555 BA ZN ZN . E ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc18 F NE2 HIS 79 F HIS 79 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc19 F OE2 GLU 129 F GLU 129 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc20 F SG CYS 134 F CYS 134 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc21 F SG CYS 141 F CYS 141 1_555 EA ZN ZN . F ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc22 G NE2 HIS 79 G HIS 79 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 G SG CYS 134 G CYS 134 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc24 G SG CYS 141 G CYS 141 1_555 HA ZN ZN . G ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc25 H NE2 HIS 79 H HIS 79 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc26 H SG CYS 134 H CYS 134 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc27 H SG CYS 141 H CYS 141 1_555 KA ZN ZN . H ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc28 I NE2 HIS 79 I HIS 79 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc29 I OE1 GLU 129 I GLU 129 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc30 I SG CYS 134 I CYS 134 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc31 I SG CYS 141 I CYS 141 1_555 NA ZN ZN . I ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc32 J NE2 HIS 79 J HIS 79 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc33 J SG CYS 134 J CYS 134 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc34 J SG CYS 141 J CYS 141 1_555 QA ZN ZN . J ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc35 K NE2 HIS 79 K HIS 79 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc36 K SG CYS 134 K CYS 134 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc37 K SG CYS 141 K CYS 141 1_555 TA ZN ZN . K ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc38 L NE2 HIS 79 L HIS 79 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc39 L SG CYS 134 L CYS 134 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc40 L SG CYS 141 L CYS 141 1_555 WA ZN ZN . L ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 109 n n PG O2G ATP sing 110 n n PG O3G ATP sing 111 n n PG O3B ATP sing 112 n n O2G HOG2 ATP sing 113 n n O3G HOG3 ATP sing 114 n n PB O1B ATP doub 115 n n PB O2B ATP sing 116 n n PB O3B ATP sing 117 n n PB O3A ATP sing 118 n n O2B HOB2 ATP sing 119 n n PA O1A ATP doub 120 n n PA O2A ATP sing 121 n n PA O3A ATP sing 122 n n PA O5' ATP sing 123 n n O2A HOA2 ATP sing 124 n n O5' C5' ATP sing 125 n n C5' C4' ATP sing 126 n n C5' "H5'1" ATP sing 127 n n C5' "H5'2" ATP sing 128 n n C4' O4' ATP sing 129 n n C4' C3' ATP sing 130 n n C4' H4' ATP sing 131 n n O4' C1' ATP sing 132 n n C3' O3' ATP sing 133 n n C3' C2' ATP sing 134 n n C3' H3' ATP sing 135 n n O3' HO3' ATP sing 136 n n C2' O2' ATP sing 137 n n C2' C1' ATP sing 138 n n C2' H2' ATP sing 139 n n O2' HO2' ATP sing 140 n n C1' N9 ATP sing 141 n n C1' H1' ATP sing 142 n n N9 C8 ATP sing 143 n y N9 C4 ATP sing 144 n y C8 N7 ATP doub 145 n y C8 H8 ATP sing 146 n n N7 C5 ATP sing 147 n y C5 C6 ATP sing 148 n y C5 C4 ATP doub 149 n y C6 N6 ATP sing 150 n n C6 N1 ATP doub 151 n y N6 HN61 ATP sing 152 n n N6 HN62 ATP sing 153 n n N1 C2 ATP sing 154 n y C2 N3 ATP doub 155 n y C2 H2 ATP sing 156 n n N3 C4 ATP sing 157 n y # _atom_sites.entry_id 7Y38 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 5 ZN A 1 1001 1001 ZN ZN . Q 6 ATP A 1 1002 1002 ATP ATP . R 7 GTP A 1 1003 1003 GTP GTP . S 5 ZN B 1 1001 1001 ZN ZN . T 7 GTP B 1 1002 1002 GTP GTP . U 6 ATP B 1 1003 1003 ATP ATP . V 5 ZN C 1 1001 1001 ZN ZN . W 7 GTP C 1 1002 1002 GTP GTP . X 6 ATP C 1 1003 1003 ATP ATP . Y 5 ZN D 1 1001 1001 ZN ZN . Z 7 GTP D 1 1002 1002 GTP GTP . AA 6 ATP D 1 1003 1003 ATP ATP . BA 5 ZN E 1 1001 1001 ZN ZN . CA 7 GTP E 1 1002 1002 GTP GTP . DA 6 ATP E 1 1003 1003 ATP ATP . EA 5 ZN F 1 1001 1001 ZN ZN . FA 7 GTP F 1 1002 1002 GTP GTP . GA 6 ATP F 1 1003 1003 ATP ATP . HA 5 ZN G 1 1001 1001 ZN ZN . IA 6 ATP G 1 1002 1002 ATP ATP . JA 7 GTP G 1 1003 1003 GTP GTP . KA 5 ZN H 1 1001 1001 ZN ZN . LA 6 ATP H 1 1002 1002 ATP ATP . MA 7 GTP H 1 1003 1003 GTP GTP . NA 5 ZN I 1 1001 1001 ZN ZN . OA 6 ATP I 1 1002 1002 ATP ATP . PA 7 GTP I 1 1003 1003 GTP GTP . QA 5 ZN J 1 1001 1001 ZN ZN . RA 7 GTP J 1 1002 1002 GTP GTP . SA 6 ATP J 1 1003 1003 ATP ATP . TA 5 ZN K 1 1001 1001 ZN ZN . UA 6 ATP K 1 1002 1002 ATP ATP . VA 7 GTP K 1 1003 1003 GTP GTP . WA 5 ZN L 1 1001 1001 ZN ZN . XA 6 ATP L 1 1002 1002 ATP ATP . YA 7 GTP L 1 1003 1003 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . OA 6 150.912 263.127 204.376 1 156.33 ? PG ATP 1002 I 1 HETATM 2 O O1G ATP . . . OA 6 150.031 263.539 205.53 1 154.38 ? O1G ATP 1002 I 1 HETATM 3 O O2G ATP . . . OA 6 152.075 262.322 204.902 1 151.85 ? O2G ATP 1002 I 1 HETATM 4 O O3G ATP . . . OA 6 150.116 262.276 203.416 1 153.39 ? O3G ATP 1002 I 1 HETATM 5 P PB ATP . . . OA 6 150.918 265.998 203.759 1 157.18 ? PB ATP 1002 I 1 HETATM 6 O O1B ATP . . . OA 6 152.022 266.968 203.416 1 152.44 ? O1B ATP 1002 I 1 HETATM 7 O O2B ATP . . . OA 6 150.477 266.239 205.182 1 153.86 ? O2B ATP 1002 I 1 HETATM 8 O O3B ATP . . . OA 6 151.487 264.458 203.585 1 156.18 ? O3B ATP 1002 I 1 HETATM 9 P PA ATP . . . OA 6 148.514 265.122 202.35 1 155.76 ? PA ATP 1002 I 1 HETATM 10 O O1A ATP . . . OA 6 147.364 265.809 201.655 1 154.75 ? O1A ATP 1002 I 1 HETATM 11 O O2A ATP . . . OA 6 148.018 264.449 203.606 1 152.96 ? O2A ATP 1002 I 1 HETATM 12 O O3A ATP . . . OA 6 149.649 266.253 202.738 1 154.59 ? O3A ATP 1002 I 1 HETATM 13 O O5' ATP . . . OA 6 149.176 264.004 201.336 1 155.02 ? O5' ATP 1002 I 1 HETATM 14 C C5' ATP . . . OA 6 149.577 264.415 200.059 1 153.43 ? C5' ATP 1002 I 1 HETATM 15 C C4' ATP . . . OA 6 148.465 264.047 199.023 1 153.56 ? C4' ATP 1002 I 1 HETATM 16 O O4' ATP . . . OA 6 147.449 263.549 199.61 1 153.97 ? O4' ATP 1002 I 1 HETATM 17 C C3' ATP . . . OA 6 147.947 265.341 198.321 1 153 ? C3' ATP 1002 I 1 HETATM 18 O O3' ATP . . . OA 6 148.301 265.336 197.008 1 152.14 ? O3' ATP 1002 I 1 HETATM 19 C C2' ATP . . . OA 6 146.436 265.29 198.454 1 153.09 ? C2' ATP 1002 I 1 HETATM 20 O O2' ATP . . . OA 6 145.791 265.667 197.145 1 153.11 ? O2' ATP 1002 I 1 HETATM 21 C C1' ATP . . . OA 6 146.175 264.049 198.744 1 152.78 ? C1' ATP 1002 I 1 HETATM 22 N N9 ATP . . . OA 6 144.968 263.958 199.522 1 152.14 ? N9 ATP 1002 I 1 HETATM 23 C C8 ATP . . . OA 6 144.856 264.25 200.806 1 151.85 ? C8 ATP 1002 I 1 HETATM 24 N N7 ATP . . . OA 6 143.607 264.051 201.196 1 151.04 ? N7 ATP 1002 I 1 HETATM 25 C C5 ATP . . . OA 6 142.907 263.622 200.134 1 151.89 ? C5 ATP 1002 I 1 HETATM 26 C C6 ATP . . . OA 6 141.569 263.253 199.923 1 151.25 ? C6 ATP 1002 I 1 HETATM 27 N N6 ATP . . . OA 6 140.616 263.299 201.016 1 150.25 ? N6 ATP 1002 I 1 HETATM 28 N N1 ATP . . . OA 6 141.187 262.863 198.716 1 151.6 ? N1 ATP 1002 I 1 HETATM 29 C C2 ATP . . . OA 6 142.043 262.814 197.704 1 150.84 ? C2 ATP 1002 I 1 HETATM 30 N N3 ATP . . . OA 6 143.312 263.155 197.868 1 151.48 ? N3 ATP 1002 I 1 HETATM 31 C C4 ATP . . . OA 6 143.769 263.56 199.063 1 152.59 ? C4 ATP 1002 I 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #