data_7Y3H
#
_model_server_result.job_id            6OsAFCLirCsiLRME20F0XQ 
_model_server_result.datetime_utc      '2025-03-06 09:12:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1502}' 
#
_entry.id    7Y3H 
#
_exptl.entry_id    7Y3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7Y3H 
_cell.length_a            98.467 
_cell.length_b            98.467 
_cell.length_c            80.612 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7Y3H 
_atom_sites.fract_transf_matrix[1][1]    0.010156 
_atom_sites.fract_transf_matrix[1][2]    0.005863 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 1501 1501 SAM SAM . 
C 3 EDO A 1 1502 1601 EDO EDO . 
D 3 EDO A 1 1503 1701 EDO EDO . 
E 3 EDO A 1 1504 1801 EDO EDO . 
F 3 EDO A 1 1505 1901 EDO EDO . 
G 3 EDO A 1 1506 2001 EDO EDO . 
H 4 IAH A 1 1507 2101 IAH D9G . 
I 5 GOL A 1 1508 2201 GOL GOL . 
J 3 EDO A 1 1509 2301 EDO EDO . 
K 6 HOH A 1 1601 53 HOH HOH . 
K 6 HOH A 2 1602 175 HOH HOH . 
K 6 HOH A 3 1603 1 HOH HOH . 
K 6 HOH A 4 1604 122 HOH HOH . 
K 6 HOH A 5 1605 180 HOH HOH . 
K 6 HOH A 6 1606 103 HOH HOH . 
K 6 HOH A 7 1607 29 HOH HOH . 
K 6 HOH A 8 1608 82 HOH HOH . 
K 6 HOH A 9 1609 130 HOH HOH . 
K 6 HOH A 10 1610 55 HOH HOH . 
K 6 HOH A 11 1611 111 HOH HOH . 
K 6 HOH A 12 1612 119 HOH HOH . 
K 6 HOH A 13 1613 50 HOH HOH . 
K 6 HOH A 14 1614 24 HOH HOH . 
K 6 HOH A 15 1615 86 HOH HOH . 
K 6 HOH A 16 1616 66 HOH HOH . 
K 6 HOH A 17 1617 47 HOH HOH . 
K 6 HOH A 18 1618 136 HOH HOH . 
K 6 HOH A 19 1619 83 HOH HOH . 
K 6 HOH A 20 1620 87 HOH HOH . 
K 6 HOH A 21 1621 19 HOH HOH . 
K 6 HOH A 22 1622 131 HOH HOH . 
K 6 HOH A 23 1623 4 HOH HOH . 
K 6 HOH A 24 1624 44 HOH HOH . 
K 6 HOH A 25 1625 186 HOH HOH . 
K 6 HOH A 26 1626 69 HOH HOH . 
K 6 HOH A 27 1627 73 HOH HOH . 
K 6 HOH A 28 1628 34 HOH HOH . 
K 6 HOH A 29 1629 12 HOH HOH . 
K 6 HOH A 30 1630 52 HOH HOH . 
K 6 HOH A 31 1631 10 HOH HOH . 
K 6 HOH A 32 1632 134 HOH HOH . 
K 6 HOH A 33 1633 75 HOH HOH . 
K 6 HOH A 34 1634 113 HOH HOH . 
K 6 HOH A 35 1635 3 HOH HOH . 
K 6 HOH A 36 1636 15 HOH HOH . 
K 6 HOH A 37 1637 6 HOH HOH . 
K 6 HOH A 38 1638 5 HOH HOH . 
K 6 HOH A 39 1639 67 HOH HOH . 
K 6 HOH A 40 1640 98 HOH HOH . 
K 6 HOH A 41 1641 54 HOH HOH . 
K 6 HOH A 42 1642 57 HOH HOH . 
K 6 HOH A 43 1643 84 HOH HOH . 
K 6 HOH A 44 1644 25 HOH HOH . 
K 6 HOH A 45 1645 11 HOH HOH . 
K 6 HOH A 46 1646 27 HOH HOH . 
K 6 HOH A 47 1647 97 HOH HOH . 
K 6 HOH A 48 1648 63 HOH HOH . 
K 6 HOH A 49 1649 124 HOH HOH . 
K 6 HOH A 50 1650 35 HOH HOH . 
K 6 HOH A 51 1651 90 HOH HOH . 
K 6 HOH A 52 1652 207 HOH HOH . 
K 6 HOH A 53 1653 8 HOH HOH . 
K 6 HOH A 54 1654 59 HOH HOH . 
K 6 HOH A 55 1655 16 HOH HOH . 
K 6 HOH A 56 1656 13 HOH HOH . 
K 6 HOH A 57 1657 139 HOH HOH . 
K 6 HOH A 58 1658 2 HOH HOH . 
K 6 HOH A 59 1659 117 HOH HOH . 
K 6 HOH A 60 1660 147 HOH HOH . 
K 6 HOH A 61 1661 156 HOH HOH . 
K 6 HOH A 62 1662 18 HOH HOH . 
K 6 HOH A 63 1663 62 HOH HOH . 
K 6 HOH A 64 1664 60 HOH HOH . 
K 6 HOH A 65 1665 187 HOH HOH . 
K 6 HOH A 66 1666 76 HOH HOH . 
K 6 HOH A 67 1667 91 HOH HOH . 
K 6 HOH A 68 1668 22 HOH HOH . 
K 6 HOH A 69 1669 33 HOH HOH . 
K 6 HOH A 70 1670 161 HOH HOH . 
K 6 HOH A 71 1671 94 HOH HOH . 
K 6 HOH A 72 1672 51 HOH HOH . 
K 6 HOH A 73 1673 116 HOH HOH . 
K 6 HOH A 74 1674 41 HOH HOH . 
K 6 HOH A 75 1675 144 HOH HOH . 
K 6 HOH A 76 1676 17 HOH HOH . 
K 6 HOH A 77 1677 162 HOH HOH . 
K 6 HOH A 78 1678 26 HOH HOH . 
K 6 HOH A 79 1679 169 HOH HOH . 
K 6 HOH A 80 1680 78 HOH HOH . 
K 6 HOH A 81 1681 107 HOH HOH . 
K 6 HOH A 82 1682 72 HOH HOH . 
K 6 HOH A 83 1683 206 HOH HOH . 
K 6 HOH A 84 1684 135 HOH HOH . 
K 6 HOH A 85 1685 40 HOH HOH . 
K 6 HOH A 86 1686 70 HOH HOH . 
K 6 HOH A 87 1687 205 HOH HOH . 
K 6 HOH A 88 1688 42 HOH HOH . 
K 6 HOH A 89 1689 80 HOH HOH . 
K 6 HOH A 90 1690 7 HOH HOH . 
K 6 HOH A 91 1691 23 HOH HOH . 
K 6 HOH A 92 1692 160 HOH HOH . 
K 6 HOH A 93 1693 109 HOH HOH . 
K 6 HOH A 94 1694 127 HOH HOH . 
K 6 HOH A 95 1695 39 HOH HOH . 
K 6 HOH A 96 1696 20 HOH HOH . 
K 6 HOH A 97 1697 31 HOH HOH . 
K 6 HOH A 98 1698 93 HOH HOH . 
K 6 HOH A 99 1699 208 HOH HOH . 
K 6 HOH A 100 1700 48 HOH HOH . 
K 6 HOH A 101 1701 138 HOH HOH . 
K 6 HOH A 102 1702 123 HOH HOH . 
K 6 HOH A 103 1703 32 HOH HOH . 
K 6 HOH A 104 1704 137 HOH HOH . 
K 6 HOH A 105 1705 9 HOH HOH . 
K 6 HOH A 106 1706 108 HOH HOH . 
K 6 HOH A 107 1707 101 HOH HOH . 
K 6 HOH A 108 1708 171 HOH HOH . 
K 6 HOH A 109 1709 68 HOH HOH . 
K 6 HOH A 110 1710 132 HOH HOH . 
K 6 HOH A 111 1711 56 HOH HOH . 
K 6 HOH A 112 1712 79 HOH HOH . 
K 6 HOH A 113 1713 191 HOH HOH . 
K 6 HOH A 114 1714 45 HOH HOH . 
K 6 HOH A 115 1715 65 HOH HOH . 
K 6 HOH A 116 1716 146 HOH HOH . 
K 6 HOH A 117 1717 85 HOH HOH . 
K 6 HOH A 118 1718 95 HOH HOH . 
K 6 HOH A 119 1719 216 HOH HOH . 
K 6 HOH A 120 1720 14 HOH HOH . 
K 6 HOH A 121 1721 126 HOH HOH . 
K 6 HOH A 122 1722 167 HOH HOH . 
K 6 HOH A 123 1723 81 HOH HOH . 
K 6 HOH A 124 1724 21 HOH HOH . 
K 6 HOH A 125 1725 155 HOH HOH . 
K 6 HOH A 126 1726 145 HOH HOH . 
K 6 HOH A 127 1727 148 HOH HOH . 
K 6 HOH A 128 1728 110 HOH HOH . 
K 6 HOH A 129 1729 61 HOH HOH . 
K 6 HOH A 130 1730 38 HOH HOH . 
K 6 HOH A 131 1731 74 HOH HOH . 
K 6 HOH A 132 1732 28 HOH HOH . 
K 6 HOH A 133 1733 71 HOH HOH . 
K 6 HOH A 134 1734 118 HOH HOH . 
K 6 HOH A 135 1735 36 HOH HOH . 
K 6 HOH A 136 1736 64 HOH HOH . 
K 6 HOH A 137 1737 43 HOH HOH . 
K 6 HOH A 138 1738 37 HOH HOH . 
K 6 HOH A 139 1739 77 HOH HOH . 
K 6 HOH A 140 1740 163 HOH HOH . 
K 6 HOH A 141 1741 99 HOH HOH . 
K 6 HOH A 142 1742 201 HOH HOH . 
K 6 HOH A 143 1743 203 HOH HOH . 
K 6 HOH A 144 1744 214 HOH HOH . 
K 6 HOH A 145 1745 174 HOH HOH . 
K 6 HOH A 146 1746 143 HOH HOH . 
K 6 HOH A 147 1747 211 HOH HOH . 
K 6 HOH A 148 1748 178 HOH HOH . 
K 6 HOH A 149 1749 153 HOH HOH . 
K 6 HOH A 150 1750 177 HOH HOH . 
K 6 HOH A 151 1751 114 HOH HOH . 
K 6 HOH A 152 1752 151 HOH HOH . 
K 6 HOH A 153 1753 181 HOH HOH . 
K 6 HOH A 154 1754 197 HOH HOH . 
K 6 HOH A 155 1755 217 HOH HOH . 
K 6 HOH A 156 1756 102 HOH HOH . 
K 6 HOH A 157 1757 219 HOH HOH . 
K 6 HOH A 158 1758 105 HOH HOH . 
K 6 HOH A 159 1759 106 HOH HOH . 
K 6 HOH A 160 1760 210 HOH HOH . 
K 6 HOH A 161 1761 120 HOH HOH . 
K 6 HOH A 162 1762 92 HOH HOH . 
K 6 HOH A 163 1763 121 HOH HOH . 
K 6 HOH A 164 1764 209 HOH HOH . 
K 6 HOH A 165 1765 166 HOH HOH . 
K 6 HOH A 166 1766 140 HOH HOH . 
K 6 HOH A 167 1767 164 HOH HOH . 
K 6 HOH A 168 1768 172 HOH HOH . 
K 6 HOH A 169 1769 204 HOH HOH . 
K 6 HOH A 170 1770 125 HOH HOH . 
K 6 HOH A 171 1771 46 HOH HOH . 
K 6 HOH A 172 1772 196 HOH HOH . 
K 6 HOH A 173 1773 176 HOH HOH . 
K 6 HOH A 174 1774 152 HOH HOH . 
K 6 HOH A 175 1775 168 HOH HOH . 
K 6 HOH A 176 1776 185 HOH HOH . 
K 6 HOH A 177 1777 96 HOH HOH . 
K 6 HOH A 178 1778 100 HOH HOH . 
K 6 HOH A 179 1779 173 HOH HOH . 
K 6 HOH A 180 1780 218 HOH HOH . 
K 6 HOH A 181 1781 183 HOH HOH . 
K 6 HOH A 182 1782 158 HOH HOH . 
K 6 HOH A 183 1783 190 HOH HOH . 
K 6 HOH A 184 1784 159 HOH HOH . 
K 6 HOH A 185 1785 58 HOH HOH . 
K 6 HOH A 186 1786 194 HOH HOH . 
K 6 HOH A 187 1787 142 HOH HOH . 
K 6 HOH A 188 1788 199 HOH HOH . 
K 6 HOH A 189 1789 30 HOH HOH . 
K 6 HOH A 190 1790 215 HOH HOH . 
K 6 HOH A 191 1791 89 HOH HOH . 
K 6 HOH A 192 1792 49 HOH HOH . 
K 6 HOH A 193 1793 200 HOH HOH . 
K 6 HOH A 194 1794 112 HOH HOH . 
K 6 HOH A 195 1795 88 HOH HOH . 
K 6 HOH A 196 1796 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 31.802 1.61 25.075 1 36.53 ? C1 EDO 1502 A 1 
HETATM 2 O O1 EDO . . . C 3 31.87 0.288 24.526 1 45.7 ? O1 EDO 1502 A 1 
HETATM 3 C C2 EDO . . . C 3 30.74 2.371 24.303 1 34.32 ? C2 EDO 1502 A 1 
HETATM 4 O O2 EDO . . . C 3 29.534 2.452 25.075 1 35.02 ? O2 EDO 1502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#