data_7Y3S
#
_model_server_result.job_id            se3TaPdGxLScPTms1xw1JA 
_model_server_result.datetime_utc      '2024-11-22 20:51:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2601}' 
#
_entry.id    7Y3S 
#
_exptl.entry_id    7Y3S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              367.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(6-bromanyl-7-methyl-imidazo[4,5-b]pyridin-3-yl)-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.16 
_cell.angle_gamma         90 
_cell.entry_id            7Y3S 
_cell.length_a            71.897 
_cell.length_b            92.017 
_cell.length_c            87.326 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 223 A GLN 1237 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc2 D O1G ATP . A ATP 2602 1_555 E MG MG . A MG 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc3 D O1B ATP . A ATP 2602 1_555 E MG MG . A MG 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc4 D O2G ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc5 D O3B ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc6 B OE1 GLU 200 B GLU 1214 1_555 K MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc7 B SG CYS 434 B CYS 1448 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc8 B SG CYS 439 B CYS 1453 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc9 B SG CYS 481 B CYS 1495 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc10 B SG CYS 483 B CYS 1497 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc11 H O2B ATP . B ATP 2602 1_555 J MG MG . B MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc12 H O1B ATP . B ATP 2602 1_555 K MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'C15 H19 Br N4 O2' 
_chem_comp.formula_weight    367.241 
_chem_comp.id                F9C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(6-bromanyl-7-methyl-imidazo[4,5-b]pyridin-3-yl)-3-[(2R,3S)-3-oxidanylpiperidin-2-yl]propan-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BR C2 F9C sing 132 n n 
C3 C2 F9C doub 133 n y 
C3 N F9C sing 134 n y 
C2 C1 F9C sing 135 n y 
N C4 F9C doub 136 n y 
C1 C F9C sing 137 n n 
C1 C5 F9C doub 138 n y 
C4 C5 F9C sing 139 n y 
C4 N2 F9C sing 140 n y 
C5 N1 F9C sing 141 n y 
N3 C11 F9C sing 142 n n 
N3 C10 F9C sing 143 n n 
C11 C12 F9C sing 144 n n 
O C8 F9C doub 145 n n 
N2 C7 F9C sing 146 n n 
N2 C6 F9C sing 147 n y 
C8 C9 F9C sing 148 n n 
C8 C7 F9C sing 149 n n 
C9 C10 F9C sing 150 n n 
N1 C6 F9C doub 151 n y 
C10 C14 F9C sing 152 n n 
C12 C13 F9C sing 153 n n 
C14 C13 F9C sing 154 n n 
C14 O1 F9C sing 155 n n 
C3 H1 F9C sing 156 n n 
C6 H2 F9C sing 157 n n 
C11 H3 F9C sing 158 n n 
C11 H4 F9C sing 159 n n 
C12 H5 F9C sing 160 n n 
C12 H6 F9C sing 161 n n 
C13 H7 F9C sing 162 n n 
C13 H8 F9C sing 163 n n 
C14 H9 F9C sing 164 n n 
C H10 F9C sing 165 n n 
C H11 F9C sing 166 n n 
C H12 F9C sing 167 n n 
C10 H13 F9C sing 168 n n 
C7 H14 F9C sing 169 n n 
C7 H15 F9C sing 170 n n 
C9 H16 F9C sing 171 n n 
C9 H17 F9C sing 172 n n 
N3 H18 F9C sing 173 n n 
O1 H20 F9C sing 174 n n 
#
_atom_sites.entry_id                     7Y3S 
_atom_sites.fract_transf_matrix[1][1]    0.013909 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004562 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F9C A 1 2601 2601 F9C 761 . 
D 3 ATP A 1 2602 2602 ATP ATP . 
E 4 MG A 1 2603 2604 MG MG . 
F 4 MG A 1 2604 2605 MG MG . 
G 2 F9C B 1 2601 2601 F9C 761 . 
H 3 ATP B 1 2602 2602 ATP ATP . 
I 5 ZN B 1 2603 2603 ZN ZN . 
J 4 MG B 1 2604 2604 MG MG . 
K 4 MG B 1 2605 2605 MG MG . 
L 6 HOH A 1 2701 21 HOH HOH . 
L 6 HOH A 2 2702 10 HOH HOH . 
L 6 HOH A 3 2703 12 HOH HOH . 
L 6 HOH A 4 2704 65 HOH HOH . 
L 6 HOH A 5 2705 50 HOH HOH . 
L 6 HOH A 6 2706 54 HOH HOH . 
L 6 HOH A 7 2707 15 HOH HOH . 
L 6 HOH A 8 2708 35 HOH HOH . 
L 6 HOH A 9 2709 32 HOH HOH . 
L 6 HOH A 10 2710 36 HOH HOH . 
L 6 HOH A 11 2711 6 HOH HOH . 
L 6 HOH A 12 2712 59 HOH HOH . 
L 6 HOH A 13 2713 1 HOH HOH . 
L 6 HOH A 14 2714 30 HOH HOH . 
L 6 HOH A 15 2715 51 HOH HOH . 
L 6 HOH A 16 2716 42 HOH HOH . 
L 6 HOH A 17 2717 48 HOH HOH . 
L 6 HOH A 18 2718 55 HOH HOH . 
L 6 HOH A 19 2719 47 HOH HOH . 
L 6 HOH A 20 2720 26 HOH HOH . 
L 6 HOH A 21 2721 66 HOH HOH . 
L 6 HOH A 22 2722 8 HOH HOH . 
L 6 HOH A 23 2723 24 HOH HOH . 
L 6 HOH A 24 2724 2 HOH HOH . 
L 6 HOH A 25 2725 23 HOH HOH . 
L 6 HOH A 26 2726 7 HOH HOH . 
L 6 HOH A 27 2727 22 HOH HOH . 
L 6 HOH A 28 2728 28 HOH HOH . 
L 6 HOH A 29 2729 4 HOH HOH . 
L 6 HOH A 30 2730 61 HOH HOH . 
L 6 HOH A 31 2731 44 HOH HOH . 
L 6 HOH A 32 2732 63 HOH HOH . 
L 6 HOH A 33 2733 56 HOH HOH . 
L 6 HOH A 34 2734 60 HOH HOH . 
L 6 HOH A 35 2735 57 HOH HOH . 
L 6 HOH A 36 2736 39 HOH HOH . 
L 6 HOH A 37 2737 20 HOH HOH . 
L 6 HOH A 38 2738 62 HOH HOH . 
L 6 HOH A 39 2739 14 HOH HOH . 
L 6 HOH A 40 2740 64 HOH HOH . 
L 6 HOH A 41 2741 9 HOH HOH . 
M 6 HOH B 1 2701 5 HOH HOH . 
M 6 HOH B 2 2702 52 HOH HOH . 
M 6 HOH B 3 2703 33 HOH HOH . 
M 6 HOH B 4 2704 19 HOH HOH . 
M 6 HOH B 5 2705 45 HOH HOH . 
M 6 HOH B 6 2706 58 HOH HOH . 
M 6 HOH B 7 2707 38 HOH HOH . 
M 6 HOH B 8 2708 18 HOH HOH . 
M 6 HOH B 9 2709 13 HOH HOH . 
M 6 HOH B 10 2710 11 HOH HOH . 
M 6 HOH B 11 2711 16 HOH HOH . 
M 6 HOH B 12 2712 25 HOH HOH . 
M 6 HOH B 13 2713 68 HOH HOH . 
M 6 HOH B 14 2714 43 HOH HOH . 
M 6 HOH B 15 2715 41 HOH HOH . 
M 6 HOH B 16 2716 40 HOH HOH . 
M 6 HOH B 17 2717 53 HOH HOH . 
M 6 HOH B 18 2718 34 HOH HOH . 
M 6 HOH B 19 2719 3 HOH HOH . 
M 6 HOH B 20 2720 49 HOH HOH . 
M 6 HOH B 21 2721 17 HOH HOH . 
M 6 HOH B 22 2722 27 HOH HOH . 
M 6 HOH B 23 2723 67 HOH HOH . 
M 6 HOH B 24 2724 29 HOH HOH . 
M 6 HOH B 25 2725 37 HOH HOH . 
M 6 HOH B 26 2726 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F9C . . . G 2 98.259 8.218 8.674 1 37.2 ? C1 F9C 2601 B 1 
HETATM 2 C C2 F9C . . . G 2 98.926 9.084 9.539 1 42.87 ? C2 F9C 2601 B 1 
HETATM 3 C C3 F9C . . . G 2 99.902 8.62 10.398 1 37.85 ? C3 F9C 2601 B 1 
HETATM 4 C C4 F9C . . . G 2 99.624 6.519 9.611 1 36.56 ? C4 F9C 2601 B 1 
HETATM 5 C C5 F9C . . . G 2 98.633 6.866 8.707 1 32.19 ? C5 F9C 2601 B 1 
HETATM 6 C C6 F9C . . . G 2 98.965 4.789 8.457 1 36.57 ? C6 F9C 2601 B 1 
HETATM 7 C C11 F9C . . . G 2 99.219 1.967 15.433 1 30.61 ? C11 F9C 2601 B 1 
HETATM 8 C C12 F9C . . . G 2 98.602 0.668 14.985 1 30.11 ? C12 F9C 2601 B 1 
HETATM 9 C C13 F9C . . . G 2 99.425 0.027 13.869 1 24.89 ? C13 F9C 2601 B 1 
HETATM 10 C C14 F9C . . . G 2 99.675 1.002 12.736 1 26.08 ? C14 F9C 2601 B 1 
HETATM 11 N N F9C . . . G 2 100.268 7.334 10.458 1 38.35 ? N F9C 2601 B 1 
HETATM 12 C C F9C . . . G 2 97.175 8.69 7.739 1 37.05 ? C F9C 2601 B 1 
HETATM 13 O O F9C . . . G 2 99.003 3.879 11.739 1 37.25 ? O F9C 2601 B 1 
HETATM 14 C C10 F9C . . . G 2 100.497 2.105 13.392 1 33.88 ? C10 F9C 2601 B 1 
HETATM 15 C C7 F9C . . . G 2 100.765 4.325 10.172 1 46.94 ? C7 F9C 2601 B 1 
HETATM 16 C C8 F9C . . . G 2 100.178 3.761 11.464 1 42.17 ? C8 F9C 2601 B 1 
HETATM 17 C C9 F9C . . . G 2 101.145 3.058 12.382 1 31.35 ? C9 F9C 2601 B 1 
HETATM 18 N N1 F9C . . . G 2 98.222 5.76 7.981 1 41.14 ? N1 F9C 2601 B 1 
HETATM 19 N N2 F9C . . . G 2 99.828 5.171 9.442 1 45.51 ? N2 F9C 2601 B 1 
HETATM 20 N N3 F9C . . . G 2 99.555 2.8 14.275 1 30.61 ? N3 F9C 2601 B 1 
HETATM 21 O O1 F9C . . . G 2 100.411 0.382 11.682 1 31.4 ? O1 F9C 2601 B 1 
HETATM 22 BR BR F9C . . . G 2 98.513 10.936 9.526 1 62.61 ? BR F9C 2601 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#