data_7Y3S
#
_model_server_result.job_id            LLxb9kicpD6zfooZ6UdPCg 
_model_server_result.datetime_utc      '2024-11-22 21:00:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2604}' 
#
_entry.id    7Y3S 
#
_exptl.entry_id    7Y3S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.16 
_cell.angle_gamma         90 
_cell.entry_id            7Y3S 
_cell.length_a            71.897 
_cell.length_b            92.017 
_cell.length_c            87.326 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 223 A GLN 1237 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? 
metalc ? metalc2 D O1G ATP . A ATP 2602 1_555 E MG MG . A MG 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc3 D O1B ATP . A ATP 2602 1_555 E MG MG . A MG 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc4 D O2G ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc5 D O3B ATP . A ATP 2602 1_555 F MG MG . A MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc6 B OE1 GLU 200 B GLU 1214 1_555 K MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
metalc ? metalc7 B SG CYS 434 B CYS 1448 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc8 B SG CYS 439 B CYS 1453 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc9 B SG CYS 481 B CYS 1495 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc10 B SG CYS 483 B CYS 1497 1_555 I ZN ZN . B ZN 2603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc11 H O2B ATP . B ATP 2602 1_555 J MG MG . B MG 2604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc12 H O1B ATP . B ATP 2602 1_555 K MG MG . B MG 2605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7Y3S 
_atom_sites.fract_transf_matrix[1][1]    0.013909 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004562 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012052 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F9C A 1 2601 2601 F9C 761 . 
D 3 ATP A 1 2602 2602 ATP ATP . 
E 4 MG A 1 2603 2604 MG MG . 
F 4 MG A 1 2604 2605 MG MG . 
G 2 F9C B 1 2601 2601 F9C 761 . 
H 3 ATP B 1 2602 2602 ATP ATP . 
I 5 ZN B 1 2603 2603 ZN ZN . 
J 4 MG B 1 2604 2604 MG MG . 
K 4 MG B 1 2605 2605 MG MG . 
L 6 HOH A 1 2701 21 HOH HOH . 
L 6 HOH A 2 2702 10 HOH HOH . 
L 6 HOH A 3 2703 12 HOH HOH . 
L 6 HOH A 4 2704 65 HOH HOH . 
L 6 HOH A 5 2705 50 HOH HOH . 
L 6 HOH A 6 2706 54 HOH HOH . 
L 6 HOH A 7 2707 15 HOH HOH . 
L 6 HOH A 8 2708 35 HOH HOH . 
L 6 HOH A 9 2709 32 HOH HOH . 
L 6 HOH A 10 2710 36 HOH HOH . 
L 6 HOH A 11 2711 6 HOH HOH . 
L 6 HOH A 12 2712 59 HOH HOH . 
L 6 HOH A 13 2713 1 HOH HOH . 
L 6 HOH A 14 2714 30 HOH HOH . 
L 6 HOH A 15 2715 51 HOH HOH . 
L 6 HOH A 16 2716 42 HOH HOH . 
L 6 HOH A 17 2717 48 HOH HOH . 
L 6 HOH A 18 2718 55 HOH HOH . 
L 6 HOH A 19 2719 47 HOH HOH . 
L 6 HOH A 20 2720 26 HOH HOH . 
L 6 HOH A 21 2721 66 HOH HOH . 
L 6 HOH A 22 2722 8 HOH HOH . 
L 6 HOH A 23 2723 24 HOH HOH . 
L 6 HOH A 24 2724 2 HOH HOH . 
L 6 HOH A 25 2725 23 HOH HOH . 
L 6 HOH A 26 2726 7 HOH HOH . 
L 6 HOH A 27 2727 22 HOH HOH . 
L 6 HOH A 28 2728 28 HOH HOH . 
L 6 HOH A 29 2729 4 HOH HOH . 
L 6 HOH A 30 2730 61 HOH HOH . 
L 6 HOH A 31 2731 44 HOH HOH . 
L 6 HOH A 32 2732 63 HOH HOH . 
L 6 HOH A 33 2733 56 HOH HOH . 
L 6 HOH A 34 2734 60 HOH HOH . 
L 6 HOH A 35 2735 57 HOH HOH . 
L 6 HOH A 36 2736 39 HOH HOH . 
L 6 HOH A 37 2737 20 HOH HOH . 
L 6 HOH A 38 2738 62 HOH HOH . 
L 6 HOH A 39 2739 14 HOH HOH . 
L 6 HOH A 40 2740 64 HOH HOH . 
L 6 HOH A 41 2741 9 HOH HOH . 
M 6 HOH B 1 2701 5 HOH HOH . 
M 6 HOH B 2 2702 52 HOH HOH . 
M 6 HOH B 3 2703 33 HOH HOH . 
M 6 HOH B 4 2704 19 HOH HOH . 
M 6 HOH B 5 2705 45 HOH HOH . 
M 6 HOH B 6 2706 58 HOH HOH . 
M 6 HOH B 7 2707 38 HOH HOH . 
M 6 HOH B 8 2708 18 HOH HOH . 
M 6 HOH B 9 2709 13 HOH HOH . 
M 6 HOH B 10 2710 11 HOH HOH . 
M 6 HOH B 11 2711 16 HOH HOH . 
M 6 HOH B 12 2712 25 HOH HOH . 
M 6 HOH B 13 2713 68 HOH HOH . 
M 6 HOH B 14 2714 43 HOH HOH . 
M 6 HOH B 15 2715 41 HOH HOH . 
M 6 HOH B 16 2716 40 HOH HOH . 
M 6 HOH B 17 2717 53 HOH HOH . 
M 6 HOH B 18 2718 34 HOH HOH . 
M 6 HOH B 19 2719 3 HOH HOH . 
M 6 HOH B 20 2720 49 HOH HOH . 
M 6 HOH B 21 2721 17 HOH HOH . 
M 6 HOH B 22 2722 27 HOH HOH . 
M 6 HOH B 23 2723 67 HOH HOH . 
M 6 HOH B 24 2724 29 HOH HOH . 
M 6 HOH B 25 2725 37 HOH HOH . 
M 6 HOH B 26 2726 46 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               97.088 
_atom_site.Cartn_y               3.263 
_atom_site.Cartn_z               4.06 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.5 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2604 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#