data_7Y43 # _model_server_result.job_id bDlIhg16bKREIx7GAlYm6A _model_server_result.datetime_utc '2025-03-27 06:25:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y43 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 7Y43 # _exptl.entry_id 7Y43 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y43 _cell.length_a 46.479 _cell.length_b 46.479 _cell.length_c 153.518 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y43 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 76 A ASP 75 1_555 D MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc2 D MG MG . A MG 101 1_555 E O HOH . A HOH 205 5_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 D MG MG . A MG 101 1_555 E O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc4 D MG MG . A MG 101 1_555 E O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 D MG MG . A MG 101 1_555 E O HOH . A HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc6 D MG MG . A MG 101 1_555 E O HOH . A HOH 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 1 1_555 C N3 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 1 1_555 C O2 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 1 1_555 C N4 DC 14 C DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 B DG 2 1_555 C N3 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 B DG 2 1_555 C O2 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 B DG 2 1_555 C N4 DC 13 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DA 3 B DA 3 1_555 C N3 DT 12 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 DA 3 B DA 3 1_555 C O4 DT 12 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 4 B DG 4 1_555 C N3 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 4 B DG 4 1_555 C O2 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 4 B DG 4 1_555 C N4 DC 11 C DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 5 B DT 5 1_555 C N1 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 5 B DT 5 1_555 C N6 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 B DG 6 1_555 C N3 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 6 B DG 6 1_555 C O2 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 6 B DG 6 1_555 C N4 DC 9 C DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 7 B DC 7 1_555 C N1 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 7 B DC 7 1_555 C O6 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 7 B DC 7 1_555 C N2 DG 8 C DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 B DG 8 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 8 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 8 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 9 B DC 9 1_555 C N1 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 9 B DC 9 1_555 C O6 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 9 B DC 9 1_555 C N2 DG 6 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DA 10 B DA 10 1_555 C N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N6 DA 10 B DA 10 1_555 C O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 DC 11 B DC 11 1_555 C N1 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N4 DC 11 B DC 11 1_555 C O6 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O2 DC 11 B DC 11 1_555 C N2 DG 4 C DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DT 12 B DT 12 1_555 C N1 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B O4 DT 12 B DT 12 1_555 C N6 DA 3 C DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N3 DC 13 B DC 13 1_555 C N1 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B N4 DC 13 B DC 13 1_555 C O6 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 B O2 DC 13 B DC 13 1_555 C N2 DG 2 C DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 B N3 DC 14 B DC 14 1_555 C N1 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 B N4 DC 14 B DC 14 1_555 C O6 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 B O2 DC 14 B DC 14 1_555 C N2 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y43 _atom_sites.fract_transf_matrix[1][1] 0.021515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 101 1 MG MG . E 4 HOH A 1 201 74 HOH HOH . E 4 HOH A 2 202 37 HOH HOH . E 4 HOH A 3 203 112 HOH HOH . E 4 HOH A 4 204 116 HOH HOH . E 4 HOH A 5 205 32 HOH HOH . E 4 HOH A 6 206 91 HOH HOH . E 4 HOH A 7 207 24 HOH HOH . E 4 HOH A 8 208 84 HOH HOH . E 4 HOH A 9 209 114 HOH HOH . E 4 HOH A 10 210 8 HOH HOH . E 4 HOH A 11 211 87 HOH HOH . E 4 HOH A 12 212 70 HOH HOH . E 4 HOH A 13 213 2 HOH HOH . E 4 HOH A 14 214 42 HOH HOH . E 4 HOH A 15 215 35 HOH HOH . E 4 HOH A 16 216 128 HOH HOH . E 4 HOH A 17 217 120 HOH HOH . E 4 HOH A 18 218 65 HOH HOH . E 4 HOH A 19 219 52 HOH HOH . E 4 HOH A 20 220 71 HOH HOH . E 4 HOH A 21 221 48 HOH HOH . E 4 HOH A 22 222 3 HOH HOH . E 4 HOH A 23 223 20 HOH HOH . E 4 HOH A 24 224 30 HOH HOH . E 4 HOH A 25 225 18 HOH HOH . E 4 HOH A 26 226 28 HOH HOH . E 4 HOH A 27 227 60 HOH HOH . E 4 HOH A 28 228 55 HOH HOH . E 4 HOH A 29 229 31 HOH HOH . E 4 HOH A 30 230 127 HOH HOH . E 4 HOH A 31 231 10 HOH HOH . E 4 HOH A 32 232 40 HOH HOH . E 4 HOH A 33 233 76 HOH HOH . E 4 HOH A 34 234 12 HOH HOH . E 4 HOH A 35 235 77 HOH HOH . E 4 HOH A 36 236 80 HOH HOH . E 4 HOH A 37 237 26 HOH HOH . E 4 HOH A 38 238 46 HOH HOH . E 4 HOH A 39 239 50 HOH HOH . E 4 HOH A 40 240 22 HOH HOH . E 4 HOH A 41 241 132 HOH HOH . E 4 HOH A 42 242 9 HOH HOH . E 4 HOH A 43 243 85 HOH HOH . E 4 HOH A 44 244 33 HOH HOH . E 4 HOH A 45 245 100 HOH HOH . E 4 HOH A 46 246 118 HOH HOH . E 4 HOH A 47 247 6 HOH HOH . E 4 HOH A 48 248 134 HOH HOH . E 4 HOH A 49 249 39 HOH HOH . E 4 HOH A 50 250 89 HOH HOH . E 4 HOH A 51 251 69 HOH HOH . E 4 HOH A 52 252 66 HOH HOH . E 4 HOH A 53 253 7 HOH HOH . E 4 HOH A 54 254 25 HOH HOH . E 4 HOH A 55 255 16 HOH HOH . E 4 HOH A 56 256 133 HOH HOH . E 4 HOH A 57 257 83 HOH HOH . E 4 HOH A 58 258 106 HOH HOH . E 4 HOH A 59 259 44 HOH HOH . E 4 HOH A 60 260 98 HOH HOH . E 4 HOH A 61 261 14 HOH HOH . E 4 HOH A 62 262 122 HOH HOH . E 4 HOH A 63 263 109 HOH HOH . E 4 HOH A 64 264 21 HOH HOH . E 4 HOH A 65 265 82 HOH HOH . E 4 HOH A 66 266 51 HOH HOH . E 4 HOH A 67 267 5 HOH HOH . E 4 HOH A 68 268 43 HOH HOH . E 4 HOH A 69 269 49 HOH HOH . E 4 HOH A 70 270 95 HOH HOH . E 4 HOH A 71 271 73 HOH HOH . E 4 HOH A 72 272 19 HOH HOH . E 4 HOH A 73 273 36 HOH HOH . E 4 HOH A 74 274 47 HOH HOH . E 4 HOH A 75 275 17 HOH HOH . E 4 HOH A 76 276 27 HOH HOH . E 4 HOH A 77 277 4 HOH HOH . E 4 HOH A 78 278 72 HOH HOH . E 4 HOH A 79 279 86 HOH HOH . E 4 HOH A 80 280 96 HOH HOH . E 4 HOH A 81 281 38 HOH HOH . E 4 HOH A 82 282 34 HOH HOH . E 4 HOH A 83 283 97 HOH HOH . E 4 HOH A 84 284 54 HOH HOH . E 4 HOH A 85 285 94 HOH HOH . E 4 HOH A 86 286 135 HOH HOH . E 4 HOH A 87 287 138 HOH HOH . E 4 HOH A 88 288 105 HOH HOH . E 4 HOH A 89 289 111 HOH HOH . E 4 HOH A 90 290 117 HOH HOH . E 4 HOH A 91 291 102 HOH HOH . E 4 HOH A 92 292 15 HOH HOH . E 4 HOH A 93 293 101 HOH HOH . E 4 HOH A 94 294 53 HOH HOH . E 4 HOH A 95 295 67 HOH HOH . E 4 HOH A 96 296 130 HOH HOH . E 4 HOH A 97 297 23 HOH HOH . E 4 HOH A 98 298 45 HOH HOH . E 4 HOH A 99 299 108 HOH HOH . E 4 HOH A 100 300 125 HOH HOH . E 4 HOH A 101 301 13 HOH HOH . E 4 HOH A 102 302 103 HOH HOH . E 4 HOH A 103 303 104 HOH HOH . E 4 HOH A 104 304 110 HOH HOH . E 4 HOH A 105 305 92 HOH HOH . E 4 HOH A 106 306 56 HOH HOH . E 4 HOH A 107 307 90 HOH HOH . E 4 HOH A 108 308 41 HOH HOH . E 4 HOH A 109 309 63 HOH HOH . E 4 HOH A 110 310 93 HOH HOH . E 4 HOH A 111 311 59 HOH HOH . E 4 HOH A 112 312 79 HOH HOH . E 4 HOH A 113 313 137 HOH HOH . E 4 HOH A 114 314 11 HOH HOH . E 4 HOH A 115 315 58 HOH HOH . E 4 HOH A 116 316 107 HOH HOH . E 4 HOH A 117 317 1 HOH HOH . E 4 HOH A 118 318 115 HOH HOH . E 4 HOH A 119 319 78 HOH HOH . E 4 HOH A 120 320 113 HOH HOH . E 4 HOH A 121 321 68 HOH HOH . E 4 HOH A 122 322 126 HOH HOH . F 4 HOH B 1 101 119 HOH HOH . F 4 HOH B 2 102 121 HOH HOH . F 4 HOH B 3 103 88 HOH HOH . F 4 HOH B 4 104 131 HOH HOH . F 4 HOH B 5 105 29 HOH HOH . F 4 HOH B 6 106 136 HOH HOH . F 4 HOH B 7 107 64 HOH HOH . F 4 HOH B 8 108 61 HOH HOH . F 4 HOH B 9 109 99 HOH HOH . F 4 HOH B 10 110 123 HOH HOH . G 4 HOH C 1 101 81 HOH HOH . G 4 HOH C 2 102 75 HOH HOH . G 4 HOH C 3 103 57 HOH HOH . G 4 HOH C 4 104 129 HOH HOH . G 4 HOH C 5 105 62 HOH HOH . G 4 HOH C 6 106 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 8.543 _atom_site.Cartn_y -12.125 _atom_site.Cartn_z -14.634 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.87 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #