data_7Y56 # _model_server_result.job_id N4Do87VMduW9T2uBtfCEaw _model_server_result.datetime_utc '2024-10-10 08:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7Y56 # _exptl.entry_id 7Y56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y56 _cell.length_a 69.36 _cell.length_b 69.36 _cell.length_c 108.856 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 44 A LEU 43 1_555 A N MSE 45 A MSE 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MSE 45 A MSE 44 1_555 A N ALA 46 A ALA 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C GLY 124 A GLY 123 1_555 A N MSE 125 A MSE 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 125 A MSE 124 1_555 A N THR 126 A THR 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 143 A LEU 142 1_555 A N MSE 144 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 144 A MSE 143 1_555 A N LYS 145 A LYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 7Y56 _atom_sites.fract_transf_matrix[1][1] 0.014418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009186 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 HOH A 1 301 113 HOH HOH . C 3 HOH A 2 302 224 HOH HOH . C 3 HOH A 3 303 217 HOH HOH . C 3 HOH A 4 304 171 HOH HOH . C 3 HOH A 5 305 47 HOH HOH . C 3 HOH A 6 306 75 HOH HOH . C 3 HOH A 7 307 46 HOH HOH . C 3 HOH A 8 308 157 HOH HOH . C 3 HOH A 9 309 228 HOH HOH . C 3 HOH A 10 310 235 HOH HOH . C 3 HOH A 11 311 110 HOH HOH . C 3 HOH A 12 312 33 HOH HOH . C 3 HOH A 13 313 149 HOH HOH . C 3 HOH A 14 314 38 HOH HOH . C 3 HOH A 15 315 214 HOH HOH . C 3 HOH A 16 316 160 HOH HOH . C 3 HOH A 17 317 114 HOH HOH . C 3 HOH A 18 318 115 HOH HOH . C 3 HOH A 19 319 77 HOH HOH . C 3 HOH A 20 320 39 HOH HOH . C 3 HOH A 21 321 134 HOH HOH . C 3 HOH A 22 322 35 HOH HOH . C 3 HOH A 23 323 12 HOH HOH . C 3 HOH A 24 324 73 HOH HOH . C 3 HOH A 25 325 93 HOH HOH . C 3 HOH A 26 326 28 HOH HOH . C 3 HOH A 27 327 222 HOH HOH . C 3 HOH A 28 328 229 HOH HOH . C 3 HOH A 29 329 50 HOH HOH . C 3 HOH A 30 330 80 HOH HOH . C 3 HOH A 31 331 55 HOH HOH . C 3 HOH A 32 332 231 HOH HOH . C 3 HOH A 33 333 84 HOH HOH . C 3 HOH A 34 334 48 HOH HOH . C 3 HOH A 35 335 246 HOH HOH . C 3 HOH A 36 336 42 HOH HOH . C 3 HOH A 37 337 72 HOH HOH . C 3 HOH A 38 338 216 HOH HOH . C 3 HOH A 39 339 74 HOH HOH . C 3 HOH A 40 340 13 HOH HOH . C 3 HOH A 41 341 81 HOH HOH . C 3 HOH A 42 342 220 HOH HOH . C 3 HOH A 43 343 34 HOH HOH . C 3 HOH A 44 344 142 HOH HOH . C 3 HOH A 45 345 239 HOH HOH . C 3 HOH A 46 346 40 HOH HOH . C 3 HOH A 47 347 1 HOH HOH . C 3 HOH A 48 348 106 HOH HOH . C 3 HOH A 49 349 122 HOH HOH . C 3 HOH A 50 350 54 HOH HOH . C 3 HOH A 51 351 210 HOH HOH . C 3 HOH A 52 352 120 HOH HOH . C 3 HOH A 53 353 44 HOH HOH . C 3 HOH A 54 354 132 HOH HOH . C 3 HOH A 55 355 112 HOH HOH . C 3 HOH A 56 356 10 HOH HOH . C 3 HOH A 57 357 82 HOH HOH . C 3 HOH A 58 358 2 HOH HOH . C 3 HOH A 59 359 249 HOH HOH . C 3 HOH A 60 360 9 HOH HOH . C 3 HOH A 61 361 7 HOH HOH . C 3 HOH A 62 362 99 HOH HOH . C 3 HOH A 63 363 37 HOH HOH . C 3 HOH A 64 364 242 HOH HOH . C 3 HOH A 65 365 243 HOH HOH . C 3 HOH A 66 366 62 HOH HOH . C 3 HOH A 67 367 202 HOH HOH . C 3 HOH A 68 368 78 HOH HOH . C 3 HOH A 69 369 227 HOH HOH . C 3 HOH A 70 370 129 HOH HOH . C 3 HOH A 71 371 20 HOH HOH . C 3 HOH A 72 372 221 HOH HOH . C 3 HOH A 73 373 145 HOH HOH . C 3 HOH A 74 374 31 HOH HOH . C 3 HOH A 75 375 41 HOH HOH . C 3 HOH A 76 376 212 HOH HOH . C 3 HOH A 77 377 125 HOH HOH . C 3 HOH A 78 378 95 HOH HOH . C 3 HOH A 79 379 138 HOH HOH . C 3 HOH A 80 380 206 HOH HOH . C 3 HOH A 81 381 94 HOH HOH . C 3 HOH A 82 382 108 HOH HOH . C 3 HOH A 83 383 14 HOH HOH . C 3 HOH A 84 384 232 HOH HOH . C 3 HOH A 85 385 29 HOH HOH . C 3 HOH A 86 386 3 HOH HOH . C 3 HOH A 87 387 101 HOH HOH . C 3 HOH A 88 388 45 HOH HOH . C 3 HOH A 89 389 167 HOH HOH . C 3 HOH A 90 390 36 HOH HOH . C 3 HOH A 91 391 208 HOH HOH . C 3 HOH A 92 392 85 HOH HOH . C 3 HOH A 93 393 26 HOH HOH . C 3 HOH A 94 394 139 HOH HOH . C 3 HOH A 95 395 226 HOH HOH . C 3 HOH A 96 396 30 HOH HOH . C 3 HOH A 97 397 207 HOH HOH . C 3 HOH A 98 398 8 HOH HOH . C 3 HOH A 99 399 107 HOH HOH . C 3 HOH A 100 400 18 HOH HOH . C 3 HOH A 101 401 136 HOH HOH . C 3 HOH A 102 402 25 HOH HOH . C 3 HOH A 103 403 22 HOH HOH . C 3 HOH A 104 404 58 HOH HOH . C 3 HOH A 105 405 16 HOH HOH . C 3 HOH A 106 406 65 HOH HOH . C 3 HOH A 107 407 152 HOH HOH . C 3 HOH A 108 408 146 HOH HOH . C 3 HOH A 109 409 98 HOH HOH . C 3 HOH A 110 410 170 HOH HOH . C 3 HOH A 111 411 234 HOH HOH . C 3 HOH A 112 412 23 HOH HOH . C 3 HOH A 113 413 4 HOH HOH . C 3 HOH A 114 414 105 HOH HOH . C 3 HOH A 115 415 66 HOH HOH . C 3 HOH A 116 416 91 HOH HOH . C 3 HOH A 117 417 64 HOH HOH . C 3 HOH A 118 418 233 HOH HOH . C 3 HOH A 119 419 27 HOH HOH . C 3 HOH A 120 420 15 HOH HOH . C 3 HOH A 121 421 24 HOH HOH . C 3 HOH A 122 422 211 HOH HOH . C 3 HOH A 123 423 236 HOH HOH . C 3 HOH A 124 424 19 HOH HOH . C 3 HOH A 125 425 97 HOH HOH . C 3 HOH A 126 426 131 HOH HOH . C 3 HOH A 127 427 151 HOH HOH . C 3 HOH A 128 428 52 HOH HOH . C 3 HOH A 129 429 70 HOH HOH . C 3 HOH A 130 430 11 HOH HOH . C 3 HOH A 131 431 121 HOH HOH . C 3 HOH A 132 432 209 HOH HOH . C 3 HOH A 133 433 237 HOH HOH . C 3 HOH A 134 434 102 HOH HOH . C 3 HOH A 135 435 21 HOH HOH . C 3 HOH A 136 436 59 HOH HOH . C 3 HOH A 137 437 57 HOH HOH . C 3 HOH A 138 438 123 HOH HOH . C 3 HOH A 139 439 67 HOH HOH . C 3 HOH A 140 440 153 HOH HOH . C 3 HOH A 141 441 87 HOH HOH . C 3 HOH A 142 442 215 HOH HOH . C 3 HOH A 143 443 68 HOH HOH . C 3 HOH A 144 444 5 HOH HOH . C 3 HOH A 145 445 251 HOH HOH . C 3 HOH A 146 446 199 HOH HOH . C 3 HOH A 147 447 147 HOH HOH . C 3 HOH A 148 448 53 HOH HOH . C 3 HOH A 149 449 238 HOH HOH . C 3 HOH A 150 450 96 HOH HOH . C 3 HOH A 151 451 201 HOH HOH . C 3 HOH A 152 452 175 HOH HOH . C 3 HOH A 153 453 213 HOH HOH . C 3 HOH A 154 454 79 HOH HOH . C 3 HOH A 155 455 179 HOH HOH . C 3 HOH A 156 456 86 HOH HOH . C 3 HOH A 157 457 116 HOH HOH . C 3 HOH A 158 458 230 HOH HOH . C 3 HOH A 159 459 60 HOH HOH . C 3 HOH A 160 460 189 HOH HOH . C 3 HOH A 161 461 100 HOH HOH . C 3 HOH A 162 462 56 HOH HOH . C 3 HOH A 163 463 137 HOH HOH . C 3 HOH A 164 464 143 HOH HOH . C 3 HOH A 165 465 245 HOH HOH . C 3 HOH A 166 466 103 HOH HOH . C 3 HOH A 167 467 43 HOH HOH . C 3 HOH A 168 468 168 HOH HOH . C 3 HOH A 169 469 6 HOH HOH . C 3 HOH A 170 470 61 HOH HOH . C 3 HOH A 171 471 32 HOH HOH . C 3 HOH A 172 472 247 HOH HOH . C 3 HOH A 173 473 205 HOH HOH . C 3 HOH A 174 474 90 HOH HOH . C 3 HOH A 175 475 244 HOH HOH . C 3 HOH A 176 476 225 HOH HOH . C 3 HOH A 177 477 248 HOH HOH . C 3 HOH A 178 478 49 HOH HOH . C 3 HOH A 179 479 250 HOH HOH . C 3 HOH A 180 480 169 HOH HOH . C 3 HOH A 181 481 17 HOH HOH . C 3 HOH A 182 482 128 HOH HOH . C 3 HOH A 183 483 104 HOH HOH . C 3 HOH A 184 484 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 48.593 29.891 21.378 1 29.8 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 49.809 29.193 21.601 1 26.39 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 47.413 28.865 21.483 1 31.77 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 47.114 28.571 22.799 1 30.54 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 46.218 29.525 20.752 1 34.16 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 45.703 30.52 21.584 1 33.77 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #