data_7Y5A # _model_server_result.job_id RdOrjYzsePymCWLJAQZDeA _model_server_result.datetime_utc '2024-11-14 18:48:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y5a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":600}' # _entry.id 7Y5A # _exptl.entry_id 7Y5A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y5A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y5A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O2G ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 H O2B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc3 H O3B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 H O1A ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 H O3A ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 J O1G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 J O2G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc8 J O2B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc9 J O3B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 J O1A ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc11 J O3A ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc12 L O1G ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc13 L O2G ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc14 L O2B ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc15 L O3B ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 L O1A ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc17 L O2A ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc18 L O3A ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc19 D OG1 THR 173 D THR 167 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc20 N O1B ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc21 N O3B ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc22 N O1A ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc23 N O2A ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc24 N O3A ADP . D ADP 600 1_555 O MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc25 P O1B ADP . F ADP 600 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc26 P O3B ADP . F ADP 600 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc27 P O1A ADP . F ADP 600 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc28 P O2A ADP . F ADP 600 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc29 P O3A ADP . F ADP 600 1_555 Q MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7Y5A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 4 ATP A 1 600 600 ATP ATP . I 5 MG A 1 601 601 MG MG . J 4 ATP B 1 600 600 ATP ATP . K 5 MG B 1 601 601 MG MG . L 4 ATP C 1 600 600 ATP ATP . M 5 MG C 1 601 601 MG MG . N 6 ADP D 1 600 600 ADP ADP . O 5 MG D 1 601 601 MG MG . P 6 ADP F 1 600 600 ADP ADP . Q 5 MG F 1 601 601 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 4 193.146 169.184 170.951 1 143.55 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . H 4 192 169.395 170.024 1 143.55 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . H 4 194.406 169.956 170.55 1 143.55 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . H 4 192.818 169.481 172.415 1 143.55 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . H 4 194.451 166.658 170.067 1 143.55 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . H 4 193.61 165.653 169.39 1 143.55 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . H 4 195.324 167.52 169.159 1 143.55 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . H 4 193.598 167.657 170.945 1 143.55 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . H 4 196.972 165.826 171.362 1 143.55 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . H 4 197.636 167.128 171.571 1 143.55 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . H 4 197.495 165.017 170.178 1 143.55 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . H 4 195.409 165.999 171.153 1 143.55 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . H 4 197.065 164.922 172.652 1 143.55 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . H 4 196.613 163.552 172.639 1 143.55 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . H 4 197.035 162.888 173.924 1 143.55 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . H 4 197.45 161.532 173.649 1 143.55 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . H 4 198.222 163.537 174.627 1 143.55 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . H 4 198.167 163.309 176.031 1 143.55 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . H 4 199.409 162.819 173.986 1 143.55 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . H 4 200.545 162.809 174.842 1 143.55 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . H 4 198.851 161.404 173.821 1 143.55 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . H 4 199.39 160.683 172.674 1 143.55 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . H 4 199.442 161.114 171.375 1 143.55 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . H 4 199.983 160.255 170.546 1 143.55 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . H 4 200.311 159.18 171.358 1 143.55 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . H 4 200.917 157.938 171.09 1 143.55 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . H 4 201.319 157.552 169.876 1 143.55 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . H 4 201.101 157.091 172.128 1 143.55 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . H 4 200.702 157.47 173.344 1 143.55 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . H 4 200.121 158.612 173.716 1 143.55 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . H 4 199.952 159.43 172.672 1 143.55 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #