data_7Y5C # _model_server_result.job_id xXxShxm_qmOnpO2kphH8WA _model_server_result.datetime_utc '2024-10-11 04:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":501}' # _entry.id 7Y5C # _exptl.entry_id 7Y5C _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y5C _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 V N N ? 10 X N N ? 10 Z N N ? 10 BA N N ? 10 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 U MG MG . A MG 600 1_555 V O1A ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc2 U MG MG . A MG 600 1_555 V O2A ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc3 U MG MG . A MG 600 1_555 V O3A ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc4 U MG MG . A MG 600 1_555 V O1B ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 U MG MG . A MG 600 1_555 V O1G ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc6 U MG MG . A MG 600 1_555 V O3G ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc7 U MG MG . A MG 600 1_555 V O3B ATP . A ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc8 W MG MG . B MG 600 1_555 X O1B ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc9 W MG MG . B MG 600 1_555 X O3B ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc10 W MG MG . B MG 600 1_555 X O2A ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc11 W MG MG . B MG 600 1_555 X O3G ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc12 W MG MG . B MG 600 1_555 X O1A ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc13 W MG MG . B MG 600 1_555 X O3A ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc14 W MG MG . B MG 600 1_555 X O1G ATP . B ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc15 C OG1 THR 179 C THR 179 1_555 Y MG MG . C MG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc16 Y MG MG . C MG 600 1_555 Z O1A ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc17 Y MG MG . C MG 600 1_555 Z O3A ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc18 Y MG MG . C MG 600 1_555 Z O1B ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc19 Y MG MG . C MG 600 1_555 Z O3B ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc20 Y MG MG . C MG 600 1_555 Z O3G ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc21 Y MG MG . C MG 600 1_555 Z O1G ATP . C ATP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc22 D OG1 THR 173 D THR 167 1_555 AA MG MG . D MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc23 AA MG MG . D MG 500 1_555 BA O2A ATP . D ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc24 AA MG MG . D MG 500 1_555 BA O3A ATP . D ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc25 AA MG MG . D MG 500 1_555 BA O1B ATP . D ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc26 AA MG MG . D MG 500 1_555 BA O1A ATP . D ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc27 F OG1 THR 173 F THR 167 1_555 DA MG MG . F MG 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc28 DA MG MG . F MG 500 1_555 EA O1B ATP . F ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc29 DA MG MG . F MG 500 1_555 EA O2G ATP . F ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc30 DA MG MG . F MG 500 1_555 EA O3B ATP . F ATP 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7Y5C _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 MG A 1 600 600 MG MG . V 10 ATP A 1 601 601 ATP ATP . W 9 MG B 1 600 600 MG MG . X 10 ATP B 1 601 601 ATP ATP . Y 9 MG C 1 600 600 MG MG . Z 10 ATP C 1 601 601 ATP ATP . AA 9 MG D 1 500 500 MG MG . BA 10 ATP D 1 501 501 ATP ATP . CA 11 ADP E 1 501 501 ADP ADP . DA 9 MG F 1 500 500 MG MG . EA 10 ATP F 1 501 501 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . BA 10 256.953 269.409 281.042 1 86.3 ? PG ATP 501 D 1 HETATM 2 O O1G ATP . . . BA 10 256.467 269.383 282.451 1 86.3 ? O1G ATP 501 D 1 HETATM 3 O O2G ATP . . . BA 10 257.809 268.198 280.662 1 86.3 ? O2G ATP 501 D 1 HETATM 4 O O3G ATP . . . BA 10 257.71 270.689 280.675 1 86.3 ? O3G ATP 501 D 1 HETATM 5 P PB ATP . . . BA 10 254.306 270.042 279.809 1 86.3 ? PB ATP 501 D 1 HETATM 6 O O1B ATP . . . BA 10 253.831 270.694 281.044 1 86.3 ? O1B ATP 501 D 1 HETATM 7 O O2B ATP . . . BA 10 253.387 268.983 279.205 1 86.3 ? O2B ATP 501 D 1 HETATM 8 O O3B ATP . . . BA 10 255.723 269.365 280.025 1 86.3 ? O3B ATP 501 D 1 HETATM 9 P PA ATP . . . BA 10 254.633 272.681 278.52 1 86.3 ? PA ATP 501 D 1 HETATM 10 O O1A ATP . . . BA 10 255.424 273.315 279.594 1 86.3 ? O1A ATP 501 D 1 HETATM 11 O O2A ATP . . . BA 10 253.179 273.141 278.43 1 86.3 ? O2A ATP 501 D 1 HETATM 12 O O3A ATP . . . BA 10 254.619 271.1 278.663 1 86.3 ? O3A ATP 501 D 1 HETATM 13 O O5' ATP . . . BA 10 255.298 272.894 277.105 1 86.3 ? O5' ATP 501 D 1 HETATM 14 C C5' ATP . . . BA 10 254.613 273.615 276.06 1 86.3 ? C5' ATP 501 D 1 HETATM 15 C C4' ATP . . . BA 10 255.168 273.191 274.725 1 86.3 ? C4' ATP 501 D 1 HETATM 16 O O4' ATP . . . BA 10 254.084 272.784 273.861 1 86.3 ? O4' ATP 501 D 1 HETATM 17 C C3' ATP . . . BA 10 255.904 274.285 273.958 1 86.3 ? C3' ATP 501 D 1 HETATM 18 O O3' ATP . . . BA 10 256.897 273.728 273.104 1 86.3 ? O3' ATP 501 D 1 HETATM 19 C C2' ATP . . . BA 10 254.775 274.937 273.162 1 86.3 ? C2' ATP 501 D 1 HETATM 20 O O2' ATP . . . BA 10 255.249 275.569 271.979 1 86.3 ? O2' ATP 501 D 1 HETATM 21 C C1' ATP . . . BA 10 253.92 273.719 272.808 1 86.3 ? C1' ATP 501 D 1 HETATM 22 N N9 ATP . . . BA 10 252.501 274.016 272.673 1 86.3 ? N9 ATP 501 D 1 HETATM 23 C C8 ATP . . . BA 10 251.5 273.713 273.559 1 86.3 ? C8 ATP 501 D 1 HETATM 24 N N7 ATP . . . BA 10 250.309 274.106 273.175 1 86.3 ? N7 ATP 501 D 1 HETATM 25 C C5 ATP . . . BA 10 250.544 274.714 271.95 1 86.3 ? C5 ATP 501 D 1 HETATM 26 C C6 ATP . . . BA 10 249.692 275.339 271.021 1 86.3 ? C6 ATP 501 D 1 HETATM 27 N N6 ATP . . . BA 10 248.372 275.463 271.188 1 86.3 ? N6 ATP 501 D 1 HETATM 28 N N1 ATP . . . BA 10 250.25 275.841 269.896 1 86.3 ? N1 ATP 501 D 1 HETATM 29 C C2 ATP . . . BA 10 251.569 275.724 269.724 1 86.3 ? C2 ATP 501 D 1 HETATM 30 N N3 ATP . . . BA 10 252.469 275.155 270.527 1 86.3 ? N3 ATP 501 D 1 HETATM 31 C C4 ATP . . . BA 10 251.891 274.667 271.63 1 86.3 ? C4 ATP 501 D 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #