data_7Y5Y # _model_server_result.job_id mZagBc7yBoSS6ljWnO2rcQ _model_server_result.datetime_utc '2024-10-12 21:22:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 7Y5Y # _exptl.entry_id 7Y5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7Y5Y _cell.length_a 80.331 _cell.length_b 80.331 _cell.length_c 224.803 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7Y5Y _atom_sites.fract_transf_matrix[1][1] 0.012448 _atom_sites.fract_transf_matrix[1][2] 0.007187 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 202 MPD MPD . D 3 PO4 A 1 202 201 PO4 PO4 . E 3 PO4 A 1 203 1 PO4 PO4 . F 3 PO4 B 1 201 201 PO4 PO4 . G 2 MPD B 1 202 202 MPD MPD . H 4 TRS B 1 203 203 TRS TRS . I 5 HOH A 1 301 154 HOH HOH . I 5 HOH A 2 302 182 HOH HOH . I 5 HOH A 3 303 196 HOH HOH . I 5 HOH A 4 304 47 HOH HOH . I 5 HOH A 5 305 115 HOH HOH . I 5 HOH A 6 306 130 HOH HOH . I 5 HOH A 7 307 92 HOH HOH . I 5 HOH A 8 308 54 HOH HOH . I 5 HOH A 9 309 105 HOH HOH . I 5 HOH A 10 310 52 HOH HOH . I 5 HOH A 11 311 70 HOH HOH . I 5 HOH A 12 312 1 HOH HOH . I 5 HOH A 13 313 85 HOH HOH . I 5 HOH A 14 314 53 HOH HOH . I 5 HOH A 15 315 116 HOH HOH . I 5 HOH A 16 316 174 HOH HOH . I 5 HOH A 17 317 87 HOH HOH . I 5 HOH A 18 318 22 HOH HOH . I 5 HOH A 19 319 86 HOH HOH . I 5 HOH A 20 320 33 HOH HOH . I 5 HOH A 21 321 76 HOH HOH . I 5 HOH A 22 322 17 HOH HOH . I 5 HOH A 23 323 9 HOH HOH . I 5 HOH A 24 324 38 HOH HOH . I 5 HOH A 25 325 20 HOH HOH . I 5 HOH A 26 326 59 HOH HOH . I 5 HOH A 27 327 143 HOH HOH . I 5 HOH A 28 328 4 HOH HOH . I 5 HOH A 29 329 109 HOH HOH . I 5 HOH A 30 330 171 HOH HOH . I 5 HOH A 31 331 36 HOH HOH . I 5 HOH A 32 332 159 HOH HOH . I 5 HOH A 33 333 77 HOH HOH . I 5 HOH A 34 334 19 HOH HOH . I 5 HOH A 35 335 3 HOH HOH . I 5 HOH A 36 336 24 HOH HOH . I 5 HOH A 37 337 8 HOH HOH . I 5 HOH A 38 338 23 HOH HOH . I 5 HOH A 39 339 2 HOH HOH . I 5 HOH A 40 340 79 HOH HOH . I 5 HOH A 41 341 90 HOH HOH . I 5 HOH A 42 342 69 HOH HOH . I 5 HOH A 43 343 138 HOH HOH . I 5 HOH A 44 344 57 HOH HOH . I 5 HOH A 45 345 117 HOH HOH . I 5 HOH A 46 346 168 HOH HOH . I 5 HOH A 47 347 28 HOH HOH . I 5 HOH A 48 348 189 HOH HOH . I 5 HOH A 49 349 135 HOH HOH . I 5 HOH A 50 350 81 HOH HOH . I 5 HOH A 51 351 153 HOH HOH . I 5 HOH A 52 352 121 HOH HOH . I 5 HOH A 53 353 68 HOH HOH . I 5 HOH A 54 354 26 HOH HOH . I 5 HOH A 55 355 110 HOH HOH . I 5 HOH A 56 356 180 HOH HOH . I 5 HOH A 57 357 164 HOH HOH . I 5 HOH A 58 358 177 HOH HOH . I 5 HOH A 59 359 18 HOH HOH . I 5 HOH A 60 360 34 HOH HOH . I 5 HOH A 61 361 61 HOH HOH . I 5 HOH A 62 362 124 HOH HOH . I 5 HOH A 63 363 157 HOH HOH . I 5 HOH A 64 364 91 HOH HOH . I 5 HOH A 65 365 122 HOH HOH . I 5 HOH A 66 366 195 HOH HOH . I 5 HOH A 67 367 44 HOH HOH . I 5 HOH A 68 368 146 HOH HOH . I 5 HOH A 69 369 100 HOH HOH . I 5 HOH A 70 370 113 HOH HOH . I 5 HOH A 71 371 84 HOH HOH . I 5 HOH A 72 372 156 HOH HOH . I 5 HOH A 73 373 114 HOH HOH . I 5 HOH A 74 374 120 HOH HOH . I 5 HOH A 75 375 162 HOH HOH . I 5 HOH A 76 376 163 HOH HOH . I 5 HOH A 77 377 41 HOH HOH . I 5 HOH A 78 378 198 HOH HOH . I 5 HOH A 79 379 72 HOH HOH . I 5 HOH A 80 380 161 HOH HOH . I 5 HOH A 81 381 56 HOH HOH . I 5 HOH A 82 382 112 HOH HOH . I 5 HOH A 83 383 45 HOH HOH . I 5 HOH A 84 384 201 HOH HOH . I 5 HOH A 85 385 65 HOH HOH . I 5 HOH A 86 386 158 HOH HOH . I 5 HOH A 87 387 203 HOH HOH . I 5 HOH A 88 388 167 HOH HOH . I 5 HOH A 89 389 183 HOH HOH . I 5 HOH A 90 390 132 HOH HOH . I 5 HOH A 91 391 190 HOH HOH . I 5 HOH A 92 392 178 HOH HOH . I 5 HOH A 93 393 137 HOH HOH . I 5 HOH A 94 394 134 HOH HOH . I 5 HOH A 95 395 102 HOH HOH . I 5 HOH A 96 396 94 HOH HOH . I 5 HOH A 97 397 191 HOH HOH . I 5 HOH A 98 398 142 HOH HOH . I 5 HOH A 99 399 188 HOH HOH . I 5 HOH A 100 400 50 HOH HOH . I 5 HOH A 101 401 75 HOH HOH . I 5 HOH A 102 402 63 HOH HOH . I 5 HOH A 103 403 197 HOH HOH . I 5 HOH A 104 404 80 HOH HOH . I 5 HOH A 105 405 127 HOH HOH . I 5 HOH A 106 406 98 HOH HOH . I 5 HOH A 107 407 88 HOH HOH . I 5 HOH A 108 408 129 HOH HOH . I 5 HOH A 109 409 194 HOH HOH . I 5 HOH A 110 410 184 HOH HOH . I 5 HOH A 111 411 199 HOH HOH . I 5 HOH A 112 412 83 HOH HOH . I 5 HOH A 113 413 169 HOH HOH . I 5 HOH A 114 414 193 HOH HOH . J 5 HOH B 1 301 192 HOH HOH . J 5 HOH B 2 302 170 HOH HOH . J 5 HOH B 3 303 5 HOH HOH . J 5 HOH B 4 304 155 HOH HOH . J 5 HOH B 5 305 62 HOH HOH . J 5 HOH B 6 306 104 HOH HOH . J 5 HOH B 7 307 205 HOH HOH . J 5 HOH B 8 308 140 HOH HOH . J 5 HOH B 9 309 40 HOH HOH . J 5 HOH B 10 310 15 HOH HOH . J 5 HOH B 11 311 74 HOH HOH . J 5 HOH B 12 312 152 HOH HOH . J 5 HOH B 13 313 35 HOH HOH . J 5 HOH B 14 314 93 HOH HOH . J 5 HOH B 15 315 185 HOH HOH . J 5 HOH B 16 316 6 HOH HOH . J 5 HOH B 17 317 141 HOH HOH . J 5 HOH B 18 318 21 HOH HOH . J 5 HOH B 19 319 25 HOH HOH . J 5 HOH B 20 320 107 HOH HOH . J 5 HOH B 21 321 176 HOH HOH . J 5 HOH B 22 322 13 HOH HOH . J 5 HOH B 23 323 202 HOH HOH . J 5 HOH B 24 324 29 HOH HOH . J 5 HOH B 25 325 149 HOH HOH . J 5 HOH B 26 326 71 HOH HOH . J 5 HOH B 27 327 14 HOH HOH . J 5 HOH B 28 328 51 HOH HOH . J 5 HOH B 29 329 12 HOH HOH . J 5 HOH B 30 330 11 HOH HOH . J 5 HOH B 31 331 148 HOH HOH . J 5 HOH B 32 332 58 HOH HOH . J 5 HOH B 33 333 7 HOH HOH . J 5 HOH B 34 334 27 HOH HOH . J 5 HOH B 35 335 31 HOH HOH . J 5 HOH B 36 336 200 HOH HOH . J 5 HOH B 37 337 99 HOH HOH . J 5 HOH B 38 338 48 HOH HOH . J 5 HOH B 39 339 16 HOH HOH . J 5 HOH B 40 340 10 HOH HOH . J 5 HOH B 41 341 37 HOH HOH . J 5 HOH B 42 342 136 HOH HOH . J 5 HOH B 43 343 160 HOH HOH . J 5 HOH B 44 344 67 HOH HOH . J 5 HOH B 45 345 32 HOH HOH . J 5 HOH B 46 346 111 HOH HOH . J 5 HOH B 47 347 119 HOH HOH . J 5 HOH B 48 348 181 HOH HOH . J 5 HOH B 49 349 131 HOH HOH . J 5 HOH B 50 350 101 HOH HOH . J 5 HOH B 51 351 46 HOH HOH . J 5 HOH B 52 352 144 HOH HOH . J 5 HOH B 53 353 165 HOH HOH . J 5 HOH B 54 354 175 HOH HOH . J 5 HOH B 55 355 78 HOH HOH . J 5 HOH B 56 356 106 HOH HOH . J 5 HOH B 57 357 82 HOH HOH . J 5 HOH B 58 358 66 HOH HOH . J 5 HOH B 59 359 103 HOH HOH . J 5 HOH B 60 360 123 HOH HOH . J 5 HOH B 61 361 55 HOH HOH . J 5 HOH B 62 362 42 HOH HOH . J 5 HOH B 63 363 145 HOH HOH . J 5 HOH B 64 364 150 HOH HOH . J 5 HOH B 65 365 179 HOH HOH . J 5 HOH B 66 366 49 HOH HOH . J 5 HOH B 67 367 108 HOH HOH . J 5 HOH B 68 368 39 HOH HOH . J 5 HOH B 69 369 118 HOH HOH . J 5 HOH B 70 370 173 HOH HOH . J 5 HOH B 71 371 187 HOH HOH . J 5 HOH B 72 372 43 HOH HOH . J 5 HOH B 73 373 186 HOH HOH . J 5 HOH B 74 374 166 HOH HOH . J 5 HOH B 75 375 96 HOH HOH . J 5 HOH B 76 376 125 HOH HOH . J 5 HOH B 77 377 60 HOH HOH . J 5 HOH B 78 378 172 HOH HOH . J 5 HOH B 79 379 126 HOH HOH . J 5 HOH B 80 380 128 HOH HOH . J 5 HOH B 81 381 30 HOH HOH . J 5 HOH B 82 382 204 HOH HOH . J 5 HOH B 83 383 89 HOH HOH . J 5 HOH B 84 384 139 HOH HOH . J 5 HOH B 85 385 64 HOH HOH . J 5 HOH B 86 386 97 HOH HOH . J 5 HOH B 87 387 73 HOH HOH . J 5 HOH B 88 388 95 HOH HOH . J 5 HOH B 89 389 147 HOH HOH . J 5 HOH B 90 390 151 HOH HOH . J 5 HOH B 91 391 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 2 54.102 50.482 124.968 1 62.71 ? C1 MPD 202 B 1 HETATM 2 C C2 MPD . . . G 2 53.088 49.728 125.818 1 61.1 ? C2 MPD 202 B 1 HETATM 3 O O2 MPD . . . G 2 52.635 48.57 125.078 1 63.89 ? O2 MPD 202 B 1 HETATM 4 C CM MPD . . . G 2 51.861 50.588 126.127 1 55.29 ? CM MPD 202 B 1 HETATM 5 C C3 MPD . . . G 2 53.749 49.248 127.098 1 64.62 ? C3 MPD 202 B 1 HETATM 6 C C4 MPD . . . G 2 53.03 47.981 127.53 1 60.25 ? C4 MPD 202 B 1 HETATM 7 O O4 MPD . . . G 2 53.786 46.875 127.086 1 67.14 ? O4 MPD 202 B 1 HETATM 8 C C5 MPD . . . G 2 52.841 47.911 129.039 1 60.9 ? C5 MPD 202 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #