data_7Y6J
#
_model_server_result.job_id            '_lX9yCY0XN-kfnxxXYqBIQ' 
_model_server_result.datetime_utc      '2024-11-27 14:53:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    7Y6J 
#
_exptl.entry_id    7Y6J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Y6J 
_cell.length_a            86.405 
_cell.length_b            42.455 
_cell.length_c            64.851 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 110 n n 
C1 C2 GOL sing 111 n n 
C1 H11 GOL sing 112 n n 
C1 H12 GOL sing 113 n n 
O1 HO1 GOL sing 114 n n 
C2 O2 GOL sing 115 n n 
C2 C3 GOL sing 116 n n 
C2 H2 GOL sing 117 n n 
O2 HO2 GOL sing 118 n n 
C3 O3 GOL sing 119 n n 
C3 H31 GOL sing 120 n n 
C3 H32 GOL sing 121 n n 
O3 HO3 GOL sing 122 n n 
#
_atom_sites.entry_id                     7Y6J 
_atom_sites.fract_transf_matrix[1][1]    0.011573 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01542 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 201 GOL GOL . 
D 2 GOL A 1 202 501 GOL GOL . 
E 2 GOL B 1 201 201 GOL GOL . 
F 2 GOL B 1 202 500 GOL GOL . 
G 3 HOH A 1 301 386 HOH HOH . 
G 3 HOH A 2 302 351 HOH HOH . 
G 3 HOH A 3 303 379 HOH HOH . 
G 3 HOH A 4 304 301 HOH HOH . 
G 3 HOH A 5 305 361 HOH HOH . 
G 3 HOH A 6 306 305 HOH HOH . 
G 3 HOH A 7 307 331 HOH HOH . 
G 3 HOH A 8 308 390 HOH HOH . 
G 3 HOH A 9 309 303 HOH HOH . 
G 3 HOH A 10 310 317 HOH HOH . 
G 3 HOH A 11 311 307 HOH HOH . 
G 3 HOH A 12 312 304 HOH HOH . 
G 3 HOH A 13 313 383 HOH HOH . 
G 3 HOH A 14 314 316 HOH HOH . 
G 3 HOH A 15 315 345 HOH HOH . 
G 3 HOH A 16 316 312 HOH HOH . 
G 3 HOH A 17 317 376 HOH HOH . 
G 3 HOH A 18 318 327 HOH HOH . 
G 3 HOH A 19 319 309 HOH HOH . 
G 3 HOH A 20 320 320 HOH HOH . 
G 3 HOH A 21 321 314 HOH HOH . 
G 3 HOH A 22 322 324 HOH HOH . 
G 3 HOH A 23 323 330 HOH HOH . 
G 3 HOH A 24 324 302 HOH HOH . 
G 3 HOH A 25 325 322 HOH HOH . 
G 3 HOH A 26 326 351 HOH HOH . 
G 3 HOH A 27 327 318 HOH HOH . 
G 3 HOH A 28 328 315 HOH HOH . 
G 3 HOH A 29 329 321 HOH HOH . 
G 3 HOH A 30 330 332 HOH HOH . 
G 3 HOH A 31 331 329 HOH HOH . 
G 3 HOH A 32 332 326 HOH HOH . 
G 3 HOH A 33 333 393 HOH HOH . 
G 3 HOH A 34 334 319 HOH HOH . 
G 3 HOH A 35 335 336 HOH HOH . 
G 3 HOH A 36 336 323 HOH HOH . 
G 3 HOH A 37 337 391 HOH HOH . 
G 3 HOH A 38 338 333 HOH HOH . 
G 3 HOH A 39 339 325 HOH HOH . 
G 3 HOH A 40 340 310 HOH HOH . 
G 3 HOH A 41 341 340 HOH HOH . 
G 3 HOH A 42 342 396 HOH HOH . 
G 3 HOH A 43 343 347 HOH HOH . 
G 3 HOH A 44 344 385 HOH HOH . 
G 3 HOH A 45 345 339 HOH HOH . 
G 3 HOH A 46 346 334 HOH HOH . 
G 3 HOH A 47 347 328 HOH HOH . 
G 3 HOH A 48 348 335 HOH HOH . 
G 3 HOH A 49 349 338 HOH HOH . 
G 3 HOH A 50 350 346 HOH HOH . 
G 3 HOH A 51 351 348 HOH HOH . 
G 3 HOH A 52 352 337 HOH HOH . 
G 3 HOH A 53 353 350 HOH HOH . 
G 3 HOH A 54 354 382 HOH HOH . 
G 3 HOH A 55 355 306 HOH HOH . 
G 3 HOH A 56 356 343 HOH HOH . 
G 3 HOH A 57 357 313 HOH HOH . 
G 3 HOH A 58 358 356 HOH HOH . 
G 3 HOH A 59 359 399 HOH HOH . 
G 3 HOH A 60 360 389 HOH HOH . 
G 3 HOH A 61 361 352 HOH HOH . 
G 3 HOH A 62 362 353 HOH HOH . 
G 3 HOH A 63 363 344 HOH HOH . 
G 3 HOH A 64 364 308 HOH HOH . 
G 3 HOH A 65 365 342 HOH HOH . 
G 3 HOH A 66 366 354 HOH HOH . 
G 3 HOH A 67 367 355 HOH HOH . 
G 3 HOH A 68 368 359 HOH HOH . 
G 3 HOH A 69 369 397 HOH HOH . 
G 3 HOH A 70 370 398 HOH HOH . 
G 3 HOH A 71 371 358 HOH HOH . 
G 3 HOH A 72 372 311 HOH HOH . 
G 3 HOH A 73 373 357 HOH HOH . 
G 3 HOH A 74 374 387 HOH HOH . 
G 3 HOH A 75 375 362 HOH HOH . 
G 3 HOH A 76 376 399 HOH HOH . 
G 3 HOH A 77 377 395 HOH HOH . 
G 3 HOH A 78 378 364 HOH HOH . 
G 3 HOH A 79 379 363 HOH HOH . 
G 3 HOH A 80 380 378 HOH HOH . 
G 3 HOH A 81 381 375 HOH HOH . 
G 3 HOH A 82 382 367 HOH HOH . 
G 3 HOH A 83 383 384 HOH HOH . 
G 3 HOH A 84 384 360 HOH HOH . 
G 3 HOH A 85 385 383 HOH HOH . 
G 3 HOH A 86 386 388 HOH HOH . 
G 3 HOH A 87 387 370 HOH HOH . 
G 3 HOH A 88 388 372 HOH HOH . 
G 3 HOH A 89 389 365 HOH HOH . 
G 3 HOH A 90 390 368 HOH HOH . 
G 3 HOH A 91 391 371 HOH HOH . 
G 3 HOH A 92 392 369 HOH HOH . 
G 3 HOH A 93 393 380 HOH HOH . 
G 3 HOH A 94 394 380 HOH HOH . 
G 3 HOH A 95 395 366 HOH HOH . 
G 3 HOH A 96 396 373 HOH HOH . 
G 3 HOH A 97 397 374 HOH HOH . 
G 3 HOH A 98 398 349 HOH HOH . 
G 3 HOH A 99 399 341 HOH HOH . 
G 3 HOH A 100 400 394 HOH HOH . 
G 3 HOH A 101 401 381 HOH HOH . 
H 3 HOH B 1 301 301 HOH HOH . 
H 3 HOH B 2 302 397 HOH HOH . 
H 3 HOH B 3 303 307 HOH HOH . 
H 3 HOH B 4 304 377 HOH HOH . 
H 3 HOH B 5 305 302 HOH HOH . 
H 3 HOH B 6 306 309 HOH HOH . 
H 3 HOH B 7 307 308 HOH HOH . 
H 3 HOH B 8 308 305 HOH HOH . 
H 3 HOH B 9 309 303 HOH HOH . 
H 3 HOH B 10 310 306 HOH HOH . 
H 3 HOH B 11 311 315 HOH HOH . 
H 3 HOH B 12 312 320 HOH HOH . 
H 3 HOH B 13 313 314 HOH HOH . 
H 3 HOH B 14 314 312 HOH HOH . 
H 3 HOH B 15 315 311 HOH HOH . 
H 3 HOH B 16 316 310 HOH HOH . 
H 3 HOH B 17 317 372 HOH HOH . 
H 3 HOH B 18 318 321 HOH HOH . 
H 3 HOH B 19 319 316 HOH HOH . 
H 3 HOH B 20 320 313 HOH HOH . 
H 3 HOH B 21 321 405 HOH HOH . 
H 3 HOH B 22 322 342 HOH HOH . 
H 3 HOH B 23 323 317 HOH HOH . 
H 3 HOH B 24 324 336 HOH HOH . 
H 3 HOH B 25 325 327 HOH HOH . 
H 3 HOH B 26 326 322 HOH HOH . 
H 3 HOH B 27 327 339 HOH HOH . 
H 3 HOH B 28 328 318 HOH HOH . 
H 3 HOH B 29 329 323 HOH HOH . 
H 3 HOH B 30 330 325 HOH HOH . 
H 3 HOH B 31 331 331 HOH HOH . 
H 3 HOH B 32 332 328 HOH HOH . 
H 3 HOH B 33 333 330 HOH HOH . 
H 3 HOH B 34 334 319 HOH HOH . 
H 3 HOH B 35 335 335 HOH HOH . 
H 3 HOH B 36 336 345 HOH HOH . 
H 3 HOH B 37 337 346 HOH HOH . 
H 3 HOH B 38 338 341 HOH HOH . 
H 3 HOH B 39 339 338 HOH HOH . 
H 3 HOH B 40 340 337 HOH HOH . 
H 3 HOH B 41 341 333 HOH HOH . 
H 3 HOH B 42 342 348 HOH HOH . 
H 3 HOH B 43 343 407 HOH HOH . 
H 3 HOH B 44 344 349 HOH HOH . 
H 3 HOH B 45 345 347 HOH HOH . 
H 3 HOH B 46 346 344 HOH HOH . 
H 3 HOH B 47 347 406 HOH HOH . 
H 3 HOH B 48 348 355 HOH HOH . 
H 3 HOH B 49 349 332 HOH HOH . 
H 3 HOH B 50 350 343 HOH HOH . 
H 3 HOH B 51 351 340 HOH HOH . 
H 3 HOH B 52 352 334 HOH HOH . 
H 3 HOH B 53 353 393 HOH HOH . 
H 3 HOH B 54 354 352 HOH HOH . 
H 3 HOH B 55 355 354 HOH HOH . 
H 3 HOH B 56 356 326 HOH HOH . 
H 3 HOH B 57 357 366 HOH HOH . 
H 3 HOH B 58 358 350 HOH HOH . 
H 3 HOH B 59 359 353 HOH HOH . 
H 3 HOH B 60 360 362 HOH HOH . 
H 3 HOH B 61 361 371 HOH HOH . 
H 3 HOH B 62 362 356 HOH HOH . 
H 3 HOH B 63 363 363 HOH HOH . 
H 3 HOH B 64 364 358 HOH HOH . 
H 3 HOH B 65 365 359 HOH HOH . 
H 3 HOH B 66 366 329 HOH HOH . 
H 3 HOH B 67 367 376 HOH HOH . 
H 3 HOH B 68 368 365 HOH HOH . 
H 3 HOH B 69 369 361 HOH HOH . 
H 3 HOH B 70 370 368 HOH HOH . 
H 3 HOH B 71 371 370 HOH HOH . 
H 3 HOH B 72 372 398 HOH HOH . 
H 3 HOH B 73 373 373 HOH HOH . 
H 3 HOH B 74 374 367 HOH HOH . 
H 3 HOH B 75 375 357 HOH HOH . 
H 3 HOH B 76 376 394 HOH HOH . 
H 3 HOH B 77 377 375 HOH HOH . 
H 3 HOH B 78 378 374 HOH HOH . 
H 3 HOH B 79 379 395 HOH HOH . 
H 3 HOH B 80 380 360 HOH HOH . 
H 3 HOH B 81 381 364 HOH HOH . 
H 3 HOH B 82 382 377 HOH HOH . 
H 3 HOH B 83 383 378 HOH HOH . 
H 3 HOH B 84 384 379 HOH HOH . 
H 3 HOH B 85 385 403 HOH HOH . 
H 3 HOH B 86 386 392 HOH HOH . 
H 3 HOH B 87 387 382 HOH HOH . 
H 3 HOH B 88 388 369 HOH HOH . 
H 3 HOH B 89 389 396 HOH HOH . 
H 3 HOH B 90 390 381 HOH HOH . 
H 3 HOH B 91 391 384 HOH HOH . 
H 3 HOH B 92 392 385 HOH HOH . 
H 3 HOH B 93 393 401 HOH HOH . 
H 3 HOH B 94 394 402 HOH HOH . 
H 3 HOH B 95 395 409 HOH HOH . 
H 3 HOH B 96 396 304 HOH HOH . 
H 3 HOH B 97 397 386 HOH HOH . 
H 3 HOH B 98 398 387 HOH HOH . 
H 3 HOH B 99 399 388 HOH HOH . 
H 3 HOH B 100 400 392 HOH HOH . 
H 3 HOH B 101 401 389 HOH HOH . 
H 3 HOH B 102 402 404 HOH HOH . 
H 3 HOH B 103 403 390 HOH HOH . 
H 3 HOH B 104 404 400 HOH HOH . 
H 3 HOH B 105 405 408 HOH HOH . 
H 3 HOH B 106 406 324 HOH HOH . 
H 3 HOH B 107 407 391 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -0.256 0.358 -10.019 0.74 41.6 ? C1 GOL 201 B 1 
HETATM 2 O O1 GOL . . . E 2 0.844 -0.177 -9.343 0.74 43.79 ? O1 GOL 201 B 1 
HETATM 3 C C2 GOL . . . E 2 -1.567 -0.072 -9.28 0.74 38.89 ? C2 GOL 201 B 1 
HETATM 4 O O2 GOL . . . E 2 -1.504 0.586 -8.057 0.74 40.51 ? O2 GOL 201 B 1 
HETATM 5 C C3 GOL . . . E 2 -2.808 0.358 -10.108 0.74 34.67 ? C3 GOL 201 B 1 
HETATM 6 O O3 GOL . . . E 2 -3.095 -0.655 -11.02 0.74 30.32 ? O3 GOL 201 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           6 
#