data_7Y77 # _model_server_result.job_id i_flaFNIiBfpS_w8xMkyCA _model_server_result.datetime_utc '2024-12-18 17:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7Y77 # _exptl.entry_id 7Y77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y77 _cell.length_a 89.413 _cell.length_b 194.4 _cell.length_c 173.374 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -89.413 0 86.687 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7Y77 _atom_sites.fract_transf_matrix[1][1] 0.011184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ATP A 1 501 501 ATP ATP . E 2 ATP B 1 501 501 ATP ATP . F 2 ATP C 1 501 501 ATP ATP . G 3 HOH A 1 601 5 HOH HOH . G 3 HOH A 2 602 2 HOH HOH . G 3 HOH A 3 603 25 HOH HOH . G 3 HOH A 4 604 9 HOH HOH . G 3 HOH A 5 605 23 HOH HOH . G 3 HOH A 6 606 17 HOH HOH . G 3 HOH A 7 607 21 HOH HOH . H 3 HOH B 1 601 24 HOH HOH . H 3 HOH B 2 602 8 HOH HOH . H 3 HOH B 3 603 14 HOH HOH . H 3 HOH B 4 604 6 HOH HOH . H 3 HOH B 5 605 18 HOH HOH . H 3 HOH B 6 606 4 HOH HOH . H 3 HOH B 7 607 16 HOH HOH . H 3 HOH B 8 608 12 HOH HOH . H 3 HOH B 9 609 10 HOH HOH . H 3 HOH B 10 610 19 HOH HOH . H 3 HOH B 11 611 22 HOH HOH . I 3 HOH C 1 601 1 HOH HOH . I 3 HOH C 2 602 11 HOH HOH . I 3 HOH C 3 603 3 HOH HOH . I 3 HOH C 4 604 27 HOH HOH . I 3 HOH C 5 605 7 HOH HOH . I 3 HOH C 6 606 13 HOH HOH . I 3 HOH C 7 607 15 HOH HOH . I 3 HOH C 8 608 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 2 -6.054 -50.033 35.722 1 133.55 ? PG ATP 501 A 1 HETATM 2 O O1G ATP . . . D 2 -6.383 -48.639 35.326 1 72.78 ? O1G ATP 501 A 1 HETATM 3 O O2G ATP . . . D 2 -7.274 -50.943 35.786 1 48.46 ? O2G ATP 501 A 1 HETATM 4 O O3G ATP . . . D 2 -5.277 -50.126 37.038 1 84.2 ? O3G ATP 501 A 1 HETATM 5 P PB ATP . . . D 2 -4.667 -50.556 33.114 1 69.09 ? PB ATP 501 A 1 HETATM 6 O O1B ATP . . . D 2 -4.372 -49.15 32.772 1 79.18 ? O1B ATP 501 A 1 HETATM 7 O O2B ATP . . . D 2 -3.541 -51.553 32.844 1 72.47 ? O2B ATP 501 A 1 HETATM 8 O O3B ATP . . . D 2 -5.096 -50.721 34.639 1 70.36 ? O3B ATP 501 A 1 HETATM 9 P PA ATP . . . D 2 -7.3 -50.472 31.766 1 73.16 ? PA ATP 501 A 1 HETATM 10 O O1A ATP . . . D 2 -7.201 -50.215 30.314 1 73.51 ? O1A ATP 501 A 1 HETATM 11 O O2A ATP . . . D 2 -7.631 -49.243 32.613 1 63.39 ? O2A ATP 501 A 1 HETATM 12 O O3A ATP . . . D 2 -5.96 -51.093 32.356 1 51.59 ? O3A ATP 501 A 1 HETATM 13 O O5' ATP . . . D 2 -8.377 -51.573 32.106 1 55.93 ? O5' ATP 501 A 1 HETATM 14 C C5' ATP . . . D 2 -8.502 -52.776 31.321 1 45.7 ? C5' ATP 501 A 1 HETATM 15 C C4' ATP . . . D 2 -9.602 -53.583 31.958 1 55.78 ? C4' ATP 501 A 1 HETATM 16 O O4' ATP . . . D 2 -10.859 -52.891 31.813 1 59.18 ? O4' ATP 501 A 1 HETATM 17 C C3' ATP . . . D 2 -9.866 -54.959 31.364 1 61.05 ? C3' ATP 501 A 1 HETATM 18 O O3' ATP . . . D 2 -8.937 -55.923 31.846 1 64.51 ? O3' ATP 501 A 1 HETATM 19 C C2' ATP . . . D 2 -11.288 -55.234 31.856 1 60.7 ? C2' ATP 501 A 1 HETATM 20 O O2' ATP . . . D 2 -11.287 -55.703 33.2 1 76.55 ? O2' ATP 501 A 1 HETATM 21 C C1' ATP . . . D 2 -11.919 -53.836 31.786 1 65.51 ? C1' ATP 501 A 1 HETATM 22 N N9 ATP . . . D 2 -12.721 -53.607 30.588 1 68.73 ? N9 ATP 501 A 1 HETATM 23 C C8 ATP . . . D 2 -12.329 -53.772 29.284 1 68.97 ? C8 ATP 501 A 1 HETATM 24 N N7 ATP . . . D 2 -13.264 -53.502 28.406 1 59.96 ? N7 ATP 501 A 1 HETATM 25 C C5 ATP . . . D 2 -14.35 -53.132 29.186 1 54.65 ? C5 ATP 501 A 1 HETATM 26 C C6 ATP . . . D 2 -15.661 -52.73 28.862 1 59.51 ? C6 ATP 501 A 1 HETATM 27 N N6 ATP . . . D 2 -16.118 -52.621 27.61 1 66.49 ? N6 ATP 501 A 1 HETATM 28 N N1 ATP . . . D 2 -16.499 -52.438 29.882 1 66.47 ? N1 ATP 501 A 1 HETATM 29 C C2 ATP . . . D 2 -16.049 -52.544 31.134 1 53.28 ? C2 ATP 501 A 1 HETATM 30 N N3 ATP . . . D 2 -14.839 -52.914 31.56 1 60.34 ? N3 ATP 501 A 1 HETATM 31 C C4 ATP . . . D 2 -14.031 -53.195 30.533 1 67 ? C4 ATP 501 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #