data_7Y77
#
_model_server_result.job_id            JwYL2nr8pR-n53Ie4LupGw 
_model_server_result.datetime_utc      '2024-12-18 17:40:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y77 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    7Y77 
#
_exptl.entry_id    7Y77 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7Y77 
_cell.length_a            89.413 
_cell.length_b            194.4 
_cell.length_c            173.374 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y77 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I 1 1 
A,B,C,D,E,F,G,H,I 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -89.413 0 86.687 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     7Y77 
_atom_sites.fract_transf_matrix[1][1]    0.011184 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005144 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ATP A 1 501 501 ATP ATP . 
E 2 ATP B 1 501 501 ATP ATP . 
F 2 ATP C 1 501 501 ATP ATP . 
G 3 HOH A 1 601 5 HOH HOH . 
G 3 HOH A 2 602 2 HOH HOH . 
G 3 HOH A 3 603 25 HOH HOH . 
G 3 HOH A 4 604 9 HOH HOH . 
G 3 HOH A 5 605 23 HOH HOH . 
G 3 HOH A 6 606 17 HOH HOH . 
G 3 HOH A 7 607 21 HOH HOH . 
H 3 HOH B 1 601 24 HOH HOH . 
H 3 HOH B 2 602 8 HOH HOH . 
H 3 HOH B 3 603 14 HOH HOH . 
H 3 HOH B 4 604 6 HOH HOH . 
H 3 HOH B 5 605 18 HOH HOH . 
H 3 HOH B 6 606 4 HOH HOH . 
H 3 HOH B 7 607 16 HOH HOH . 
H 3 HOH B 8 608 12 HOH HOH . 
H 3 HOH B 9 609 10 HOH HOH . 
H 3 HOH B 10 610 19 HOH HOH . 
H 3 HOH B 11 611 22 HOH HOH . 
I 3 HOH C 1 601 1 HOH HOH . 
I 3 HOH C 2 602 11 HOH HOH . 
I 3 HOH C 3 603 3 HOH HOH . 
I 3 HOH C 4 604 27 HOH HOH . 
I 3 HOH C 5 605 7 HOH HOH . 
I 3 HOH C 6 606 13 HOH HOH . 
I 3 HOH C 7 607 15 HOH HOH . 
I 3 HOH C 8 608 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 2 -19.571 -4.399 59.059 1 84.86 ? PG ATP 501 C 1 
HETATM 2 O O1G ATP . . . F 2 -20.746 -4.949 59.786 1 85.59 ? O1G ATP 501 C 1 
HETATM 3 O O2G ATP . . . F 2 -19.741 -4.405 57.538 1 77.32 ? O2G ATP 501 C 1 
HETATM 4 O O3G ATP . . . F 2 -18.251 -5.082 59.424 1 87.97 ? O3G ATP 501 C 1 
HETATM 5 P PB ATP . . . F 2 -20.155 -1.598 59.954 1 82.5 ? PB ATP 501 C 1 
HETATM 6 O O1B ATP . . . F 2 -20.911 -1.891 61.188 1 85.69 ? O1B ATP 501 C 1 
HETATM 7 O O2B ATP . . . F 2 -19.174 -0.428 60.043 1 85.91 ? O2B ATP 501 C 1 
HETATM 8 O O3B ATP . . . F 2 -19.341 -2.858 59.429 1 88.89 ? O3B ATP 501 C 1 
HETATM 9 P PA ATP . . . F 2 -22.622 -1.672 58.32 1 69.41 ? PA ATP 501 C 1 
HETATM 10 O O1A ATP . . . F 2 -23.56 -0.592 58.687 1 75.91 ? O1A ATP 501 C 1 
HETATM 11 O O2A ATP . . . F 2 -22.934 -3.035 58.934 1 79.12 ? O2A ATP 501 C 1 
HETATM 12 O O3A ATP . . . F 2 -21.124 -1.313 58.723 1 71.69 ? O3A ATP 501 C 1 
HETATM 13 O O5' ATP . . . F 2 -22.561 -1.874 56.756 1 75.78 ? O5' ATP 501 C 1 
HETATM 14 C C5' ATP . . . F 2 -22.771 -0.774 55.846 1 64.27 ? C5' ATP 501 C 1 
HETATM 15 C C4' ATP . . . F 2 -22.62 -1.313 54.448 1 72.65 ? C4' ATP 501 C 1 
HETATM 16 O O4' ATP . . . F 2 -23.782 -2.097 54.11 1 74.42 ? O4' ATP 501 C 1 
HETATM 17 C C3' ATP . . . F 2 -22.532 -0.269 53.344 1 67.61 ? C3' ATP 501 C 1 
HETATM 18 O O3' ATP . . . F 2 -21.199 0.21 53.205 1 76.57 ? O3' ATP 501 C 1 
HETATM 19 C C2' ATP . . . F 2 -22.987 -1.061 52.115 1 70.15 ? C2' ATP 501 C 1 
HETATM 20 O O2' ATP . . . F 2 -21.912 -1.795 51.537 1 78.32 ? O2' ATP 501 C 1 
HETATM 21 C C1' ATP . . . F 2 -24.02 -2.028 52.713 1 65.84 ? C1' ATP 501 C 1 
HETATM 22 N N9 ATP . . . F 2 -25.412 -1.641 52.496 1 66.76 ? N9 ATP 501 C 1 
HETATM 23 C C8 ATP . . . F 2 -26.02 -0.468 52.865 1 77.06 ? C8 ATP 501 C 1 
HETATM 24 N N7 ATP . . . F 2 -27.289 -0.396 52.539 1 76.69 ? N7 ATP 501 C 1 
HETATM 25 C C5 ATP . . . F 2 -27.535 -1.61 51.913 1 71.73 ? C5 ATP 501 C 1 
HETATM 26 C C6 ATP . . . F 2 -28.692 -2.163 51.333 1 72.98 ? C6 ATP 501 C 1 
HETATM 27 N N6 ATP . . . F 2 -29.874 -1.538 51.286 1 73.97 ? N6 ATP 501 C 1 
HETATM 28 N N1 ATP . . . F 2 -28.597 -3.399 50.792 1 75.86 ? N1 ATP 501 C 1 
HETATM 29 C C2 ATP . . . F 2 -27.42 -4.029 50.835 1 67.76 ? C2 ATP 501 C 1 
HETATM 30 N N3 ATP . . . F 2 -26.264 -3.608 51.355 1 68.7 ? N3 ATP 501 C 1 
HETATM 31 C C4 ATP . . . F 2 -26.387 -2.387 51.883 1 72.62 ? C4 ATP 501 C 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           496 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#