data_7Y7T # _model_server_result.job_id ZsZlGExd5mk8OJYweaOPIA _model_server_result.datetime_utc '2024-11-27 15:37:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1502}' # _entry.id 7Y7T # _exptl.entry_id 7Y7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 102.38 _cell.angle_beta 103.41 _cell.angle_gamma 94.13 _cell.entry_id 7Y7T _cell.length_a 81.505 _cell.length_b 85.79 _cell.length_c 101.28 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 631 A ASP 1007 1_555 G MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 A OD1 ASP 631 A ASP 1007 1_555 H MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 A OD2 ASP 633 A ASP 1009 1_555 G MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc4 A OD1 ASP 633 A ASP 1009 1_555 H MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc5 A OD1 ASP 635 A ASP 1011 1_555 H MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc6 E O2G GTP . A GTP 1501 1_555 F MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc7 E O3G GTP . A GTP 1501 1_555 G MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 E O2B GTP . A GTP 1501 1_555 G MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc9 E O2B GTP . A GTP 1501 1_555 H MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc10 E O2A GTP . A GTP 1501 1_555 H MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc11 F MG MG . A MG 1502 1_555 L O HOH . A HOH 1655 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc12 F MG MG . A MG 1502 1_555 L O HOH . A HOH 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc13 F MG MG . A MG 1502 1_555 L O HOH . A HOH 1675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc14 F MG MG . A MG 1502 1_555 L O HOH . A HOH 1676 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc15 G MG MG . A MG 1503 1_555 L O HOH . A HOH 1638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc16 H MG MG . A MG 1504 1_555 L O HOH . A HOH 1612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc17 B OD1 ASP 333 B ASP 709 1_555 I MG MG . B MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc18 B OD2 ASP 631 B ASP 1007 1_555 I MG MG . B MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc19 B OD1 ASP 631 B ASP 1007 1_555 J MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc20 B OD1 ASP 633 B ASP 1009 1_555 J MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc21 B OD1 ASP 635 B ASP 1011 1_555 J MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc22 B OD2 ASP 635 B ASP 1011 1_555 J MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc23 J MG MG . B MG 1502 1_555 K O3G ATP . B ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc24 J MG MG . B MG 1502 1_555 K O2B ATP . B ATP 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc25 J MG MG . B MG 1502 1_555 M O HOH . B HOH 1636 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? hydrog WATSON-CRICK hydrog1 C N3 DC 8 C DC 8 1_555 D N1 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 DC 8 C DC 8 1_555 D O6 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 DC 8 C DC 8 1_555 D N2 G 4 D G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 9 C DT 9 1_555 D N1 A 3 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 9 C DT 9 1_555 D N6 A 3 D A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 10 C DT 10 1_555 D N1 A 2 D A 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 10 C DT 10 1_555 D N6 A 2 D A 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N3 DT 11 C DT 11 1_555 D N1 A 1 D A 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C O4 DT 11 C DT 11 1_555 D N6 A 1 D A 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7Y7T _atom_sites.fract_transf_matrix[1][1] 0.012269 _atom_sites.fract_transf_matrix[1][2] 0.000885 _atom_sites.fract_transf_matrix[1][3] 0.003228 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011687 _atom_sites.fract_transf_matrix[2][3] 0.002865 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GTP A 1 1501 11 GTP GTP . F 5 MG A 1 1502 1 MG MG . G 5 MG A 1 1503 2 MG MG . H 5 MG A 1 1504 3 MG MG . I 5 MG B 1 1501 4 MG MG . J 5 MG B 1 1502 5 MG MG . K 6 ATP B 1 1503 1 ATP ATP . L 7 HOH A 1 1601 46 HOH HOH . L 7 HOH A 2 1602 180 HOH HOH . L 7 HOH A 3 1603 61 HOH HOH . L 7 HOH A 4 1604 150 HOH HOH . L 7 HOH A 5 1605 118 HOH HOH . L 7 HOH A 6 1606 135 HOH HOH . L 7 HOH A 7 1607 103 HOH HOH . L 7 HOH A 8 1608 182 HOH HOH . L 7 HOH A 9 1609 105 HOH HOH . L 7 HOH A 10 1610 176 HOH HOH . L 7 HOH A 11 1611 31 HOH HOH . L 7 HOH A 12 1612 93 HOH HOH . L 7 HOH A 13 1613 12 HOH HOH . L 7 HOH A 14 1614 20 HOH HOH . L 7 HOH A 15 1615 22 HOH HOH . L 7 HOH A 16 1616 40 HOH HOH . L 7 HOH A 17 1617 25 HOH HOH . L 7 HOH A 18 1618 153 HOH HOH . L 7 HOH A 19 1619 149 HOH HOH . L 7 HOH A 20 1620 144 HOH HOH . L 7 HOH A 21 1621 70 HOH HOH . L 7 HOH A 22 1622 184 HOH HOH . L 7 HOH A 23 1623 102 HOH HOH . L 7 HOH A 24 1624 27 HOH HOH . L 7 HOH A 25 1625 119 HOH HOH . L 7 HOH A 26 1626 38 HOH HOH . L 7 HOH A 27 1627 170 HOH HOH . L 7 HOH A 28 1628 54 HOH HOH . L 7 HOH A 29 1629 199 HOH HOH . L 7 HOH A 30 1630 78 HOH HOH . L 7 HOH A 31 1631 168 HOH HOH . L 7 HOH A 32 1632 6 HOH HOH . L 7 HOH A 33 1633 183 HOH HOH . L 7 HOH A 34 1634 4 HOH HOH . L 7 HOH A 35 1635 84 HOH HOH . L 7 HOH A 36 1636 133 HOH HOH . L 7 HOH A 37 1637 3 HOH HOH . L 7 HOH A 38 1638 162 HOH HOH . L 7 HOH A 39 1639 11 HOH HOH . L 7 HOH A 40 1640 142 HOH HOH . L 7 HOH A 41 1641 188 HOH HOH . L 7 HOH A 42 1642 172 HOH HOH . L 7 HOH A 43 1643 173 HOH HOH . L 7 HOH A 44 1644 30 HOH HOH . L 7 HOH A 45 1645 169 HOH HOH . L 7 HOH A 46 1646 128 HOH HOH . L 7 HOH A 47 1647 143 HOH HOH . L 7 HOH A 48 1648 121 HOH HOH . L 7 HOH A 49 1649 56 HOH HOH . L 7 HOH A 50 1650 189 HOH HOH . L 7 HOH A 51 1651 154 HOH HOH . L 7 HOH A 52 1652 141 HOH HOH . L 7 HOH A 53 1653 122 HOH HOH . L 7 HOH A 54 1654 117 HOH HOH . L 7 HOH A 55 1655 95 HOH HOH . L 7 HOH A 56 1656 9 HOH HOH . L 7 HOH A 57 1657 60 HOH HOH . L 7 HOH A 58 1658 124 HOH HOH . L 7 HOH A 59 1659 106 HOH HOH . L 7 HOH A 60 1660 97 HOH HOH . L 7 HOH A 61 1661 91 HOH HOH . L 7 HOH A 62 1662 99 HOH HOH . L 7 HOH A 63 1663 156 HOH HOH . L 7 HOH A 64 1664 120 HOH HOH . L 7 HOH A 65 1665 79 HOH HOH . L 7 HOH A 66 1666 186 HOH HOH . L 7 HOH A 67 1667 100 HOH HOH . L 7 HOH A 68 1668 197 HOH HOH . L 7 HOH A 69 1669 187 HOH HOH . L 7 HOH A 70 1670 155 HOH HOH . L 7 HOH A 71 1671 198 HOH HOH . L 7 HOH A 72 1672 101 HOH HOH . L 7 HOH A 73 1673 166 HOH HOH . L 7 HOH A 74 1674 137 HOH HOH . L 7 HOH A 75 1675 96 HOH HOH . L 7 HOH A 76 1676 94 HOH HOH . L 7 HOH A 77 1677 147 HOH HOH . L 7 HOH A 78 1678 134 HOH HOH . L 7 HOH A 79 1679 104 HOH HOH . L 7 HOH A 80 1680 111 HOH HOH . L 7 HOH A 81 1681 49 HOH HOH . M 7 HOH B 1 1601 107 HOH HOH . M 7 HOH B 2 1602 50 HOH HOH . M 7 HOH B 3 1603 201 HOH HOH . M 7 HOH B 4 1604 80 HOH HOH . M 7 HOH B 5 1605 86 HOH HOH . M 7 HOH B 6 1606 53 HOH HOH . M 7 HOH B 7 1607 29 HOH HOH . M 7 HOH B 8 1608 125 HOH HOH . M 7 HOH B 9 1609 127 HOH HOH . M 7 HOH B 10 1610 62 HOH HOH . M 7 HOH B 11 1611 132 HOH HOH . M 7 HOH B 12 1612 5 HOH HOH . M 7 HOH B 13 1613 28 HOH HOH . M 7 HOH B 14 1614 45 HOH HOH . M 7 HOH B 15 1615 87 HOH HOH . M 7 HOH B 16 1616 193 HOH HOH . M 7 HOH B 17 1617 123 HOH HOH . M 7 HOH B 18 1618 10 HOH HOH . M 7 HOH B 19 1619 8 HOH HOH . M 7 HOH B 20 1620 17 HOH HOH . M 7 HOH B 21 1621 1 HOH HOH . M 7 HOH B 22 1622 23 HOH HOH . M 7 HOH B 23 1623 190 HOH HOH . M 7 HOH B 24 1624 24 HOH HOH . M 7 HOH B 25 1625 67 HOH HOH . M 7 HOH B 26 1626 112 HOH HOH . M 7 HOH B 27 1627 113 HOH HOH . M 7 HOH B 28 1628 65 HOH HOH . M 7 HOH B 29 1629 77 HOH HOH . M 7 HOH B 30 1630 15 HOH HOH . M 7 HOH B 31 1631 14 HOH HOH . M 7 HOH B 32 1632 33 HOH HOH . M 7 HOH B 33 1633 130 HOH HOH . M 7 HOH B 34 1634 41 HOH HOH . M 7 HOH B 35 1635 110 HOH HOH . M 7 HOH B 36 1636 195 HOH HOH . M 7 HOH B 37 1637 177 HOH HOH . M 7 HOH B 38 1638 174 HOH HOH . M 7 HOH B 39 1639 81 HOH HOH . M 7 HOH B 40 1640 66 HOH HOH . M 7 HOH B 41 1641 178 HOH HOH . M 7 HOH B 42 1642 63 HOH HOH . M 7 HOH B 43 1643 7 HOH HOH . M 7 HOH B 44 1644 98 HOH HOH . M 7 HOH B 45 1645 163 HOH HOH . M 7 HOH B 46 1646 36 HOH HOH . M 7 HOH B 47 1647 152 HOH HOH . M 7 HOH B 48 1648 68 HOH HOH . M 7 HOH B 49 1649 114 HOH HOH . M 7 HOH B 50 1650 109 HOH HOH . M 7 HOH B 51 1651 16 HOH HOH . M 7 HOH B 52 1652 181 HOH HOH . M 7 HOH B 53 1653 55 HOH HOH . M 7 HOH B 54 1654 161 HOH HOH . M 7 HOH B 55 1655 83 HOH HOH . M 7 HOH B 56 1656 32 HOH HOH . M 7 HOH B 57 1657 200 HOH HOH . M 7 HOH B 58 1658 157 HOH HOH . M 7 HOH B 59 1659 129 HOH HOH . M 7 HOH B 60 1660 43 HOH HOH . M 7 HOH B 61 1661 196 HOH HOH . M 7 HOH B 62 1662 72 HOH HOH . M 7 HOH B 63 1663 108 HOH HOH . M 7 HOH B 64 1664 115 HOH HOH . M 7 HOH B 65 1665 88 HOH HOH . M 7 HOH B 66 1666 52 HOH HOH . M 7 HOH B 67 1667 194 HOH HOH . M 7 HOH B 68 1668 131 HOH HOH . M 7 HOH B 69 1669 146 HOH HOH . M 7 HOH B 70 1670 175 HOH HOH . M 7 HOH B 71 1671 158 HOH HOH . M 7 HOH B 72 1672 151 HOH HOH . M 7 HOH B 73 1673 164 HOH HOH . M 7 HOH B 74 1674 179 HOH HOH . M 7 HOH B 75 1675 58 HOH HOH . N 7 HOH C 1 101 185 HOH HOH . N 7 HOH C 2 102 191 HOH HOH . N 7 HOH C 3 103 192 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -24.048 _atom_site.Cartn_y 19.663 _atom_site.Cartn_z 16.441 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 91.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #