data_7Y7W # _model_server_result.job_id wgSSWbbkO-shb_RIOlL3xw _model_server_result.datetime_utc '2024-11-30 12:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 7Y7W # _exptl.entry_id 7Y7W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7Y7W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 164 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 A ND2 ASN 176 A ASN 176 1_555 D C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale2 A ND2 ASN 181 A ASN 181 1_555 C C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? covale ? covale3 A ND2 ASN 184 A ASN 184 1_555 E C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? metalc ? metalc1 A O GLY 59 A GLY 59 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A O ALA 61 A ALA 61 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A O ILE 62 A ILE 62 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD1 ASN 66 A ASN 66 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc5 A O SER 295 A SER 295 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc6 A OG SER 295 A SER 295 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A OD1 ASN 327 A ASN 327 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc8 A O LEU 392 A LEU 392 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc9 A OD2 ASP 395 A ASP 395 1_555 G NA NA . A NA 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 B O ABU . A ABU 701 1_555 F NA NA . A NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc11 G NA NA . A NA 706 1_555 I O HOH . A HOH 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 252 n n C1 O1 NAG sing 253 n n C1 O5 NAG sing 254 n n C1 H1 NAG sing 255 n n C2 C3 NAG sing 256 n n C2 N2 NAG sing 257 n n C2 H2 NAG sing 258 n n C3 C4 NAG sing 259 n n C3 O3 NAG sing 260 n n C3 H3 NAG sing 261 n n C4 C5 NAG sing 262 n n C4 O4 NAG sing 263 n n C4 H4 NAG sing 264 n n C5 C6 NAG sing 265 n n C5 O5 NAG sing 266 n n C5 H5 NAG sing 267 n n C6 O6 NAG sing 268 n n C6 H61 NAG sing 269 n n C6 H62 NAG sing 270 n n C7 C8 NAG sing 271 n n C7 N2 NAG sing 272 n n C7 O7 NAG doub 273 n n C8 H81 NAG sing 274 n n C8 H82 NAG sing 275 n n C8 H83 NAG sing 276 n n N2 HN2 NAG sing 277 n n O1 HO1 NAG sing 278 n n O3 HO3 NAG sing 279 n n O4 HO4 NAG sing 280 n n O6 HO6 NAG sing 281 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7Y7W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ABU A 1 701 601 ABU ABU . C 3 NAG A 1 702 602 NAG NAG . D 3 NAG A 1 703 603 NAG NAG . E 3 NAG A 1 704 604 NAG NAG . F 4 NA A 1 705 1 NA NA . G 4 NA A 1 706 2 NA NA . H 5 CL A 1 707 1 CL CL . I 6 HOH A 1 801 15 HOH HOH . I 6 HOH A 2 802 28 HOH HOH . I 6 HOH A 3 803 11 HOH HOH . I 6 HOH A 4 804 47 HOH HOH . I 6 HOH A 5 805 7 HOH HOH . I 6 HOH A 6 806 14 HOH HOH . I 6 HOH A 7 807 3 HOH HOH . I 6 HOH A 8 808 39 HOH HOH . I 6 HOH A 9 809 6 HOH HOH . I 6 HOH A 10 810 12 HOH HOH . I 6 HOH A 11 811 4 HOH HOH . I 6 HOH A 12 812 21 HOH HOH . I 6 HOH A 13 813 46 HOH HOH . I 6 HOH A 14 814 36 HOH HOH . I 6 HOH A 15 815 29 HOH HOH . I 6 HOH A 16 816 20 HOH HOH . I 6 HOH A 17 817 16 HOH HOH . I 6 HOH A 18 818 17 HOH HOH . I 6 HOH A 19 819 26 HOH HOH . I 6 HOH A 20 820 25 HOH HOH . I 6 HOH A 21 821 41 HOH HOH . I 6 HOH A 22 822 31 HOH HOH . I 6 HOH A 23 823 30 HOH HOH . I 6 HOH A 24 824 2 HOH HOH . I 6 HOH A 25 825 10 HOH HOH . I 6 HOH A 26 826 44 HOH HOH . I 6 HOH A 27 827 33 HOH HOH . I 6 HOH A 28 828 8 HOH HOH . I 6 HOH A 29 829 42 HOH HOH . I 6 HOH A 30 830 18 HOH HOH . I 6 HOH A 31 831 19 HOH HOH . I 6 HOH A 32 832 34 HOH HOH . I 6 HOH A 33 833 40 HOH HOH . I 6 HOH A 34 834 5 HOH HOH . I 6 HOH A 35 835 24 HOH HOH . I 6 HOH A 36 836 1 HOH HOH . I 6 HOH A 37 837 22 HOH HOH . I 6 HOH A 38 838 23 HOH HOH . I 6 HOH A 39 839 13 HOH HOH . I 6 HOH A 40 840 32 HOH HOH . I 6 HOH A 41 841 38 HOH HOH . I 6 HOH A 42 842 35 HOH HOH . I 6 HOH A 43 843 45 HOH HOH . I 6 HOH A 44 844 37 HOH HOH . I 6 HOH A 45 845 48 HOH HOH . I 6 HOH A 46 846 9 HOH HOH . I 6 HOH A 47 847 43 HOH HOH . I 6 HOH A 48 848 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 95.682 115.629 147.986 1 90.81 ? C1 NAG 703 A 1 HETATM 2 C C2 NAG . . . D 3 94.521 114.818 148.567 1 90.81 ? C2 NAG 703 A 1 HETATM 3 C C3 NAG . . . D 3 93.594 115.73 149.37 1 90.81 ? C3 NAG 703 A 1 HETATM 4 C C4 NAG . . . D 3 94.385 116.484 150.43 1 90.81 ? C4 NAG 703 A 1 HETATM 5 C C5 NAG . . . D 3 95.546 117.235 149.782 1 90.81 ? C5 NAG 703 A 1 HETATM 6 C C6 NAG . . . D 3 96.443 117.919 150.787 1 90.81 ? C6 NAG 703 A 1 HETATM 7 C C7 NAG . . . D 3 93.321 112.883 147.628 1 90.81 ? C7 NAG 703 A 1 HETATM 8 C C8 NAG . . . D 3 93.609 112.185 148.925 1 90.81 ? C8 NAG 703 A 1 HETATM 9 N N2 NAG . . . D 3 93.781 114.135 147.517 1 90.81 ? N2 NAG 703 A 1 HETATM 10 O O3 NAG . . . D 3 92.566 114.961 149.986 1 90.81 ? O3 NAG 703 A 1 HETATM 11 O O4 NAG . . . D 3 93.541 117.41 151.103 1 90.81 ? O4 NAG 703 A 1 HETATM 12 O O5 NAG . . . D 3 96.371 116.316 149.049 1 90.81 ? O5 NAG 703 A 1 HETATM 13 O O6 NAG . . . D 3 97.147 116.976 151.583 1 90.81 ? O6 NAG 703 A 1 HETATM 14 O O7 NAG . . . D 3 92.702 112.338 146.721 1 90.81 ? O7 NAG 703 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1371 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #