data_7Y8L # _model_server_result.job_id 0ZTDPEn0EpFMMKe2T1uW4w _model_server_result.datetime_utc '2025-02-05 06:50:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7Y8L # _exptl.entry_id 7Y8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.58 _cell.angle_gamma 90 _cell.entry_id 7Y8L _cell.length_a 129.66 _cell.length_b 63.151 _cell.length_c 134.637 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,E,F,G,H,M,N 2 1 C,D,I,J,K,L,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 L N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 340 n n PA O2A NDP sing 341 n n PA O5B NDP sing 342 n n PA O3 NDP sing 343 n n O2A HOA2 NDP sing 344 n n O5B C5B NDP sing 345 n n C5B C4B NDP sing 346 n n C5B H51A NDP sing 347 n n C5B H52A NDP sing 348 n n C4B O4B NDP sing 349 n n C4B C3B NDP sing 350 n n C4B H4B NDP sing 351 n n O4B C1B NDP sing 352 n n C3B O3B NDP sing 353 n n C3B C2B NDP sing 354 n n C3B H3B NDP sing 355 n n O3B HO3A NDP sing 356 n n C2B O2B NDP sing 357 n n C2B C1B NDP sing 358 n n C2B H2B NDP sing 359 n n O2B P2B NDP sing 360 n n C1B N9A NDP sing 361 n n C1B H1B NDP sing 362 n n N9A C8A NDP sing 363 n y N9A C4A NDP sing 364 n y C8A N7A NDP doub 365 n y C8A H8A NDP sing 366 n n N7A C5A NDP sing 367 n y C5A C6A NDP sing 368 n y C5A C4A NDP doub 369 n y C6A N6A NDP sing 370 n n C6A N1A NDP doub 371 n y N6A H61A NDP sing 372 n n N6A H62A NDP sing 373 n n N1A C2A NDP sing 374 n y C2A N3A NDP doub 375 n y C2A H2A NDP sing 376 n n N3A C4A NDP sing 377 n y O3 PN NDP sing 378 n n PN O1N NDP doub 379 n n PN O2N NDP sing 380 n n PN O5D NDP sing 381 n n O2N H21N NDP sing 382 n n O5D C5D NDP sing 383 n n C5D C4D NDP sing 384 n n C5D H51N NDP sing 385 n n C5D H52N NDP sing 386 n n C4D O4D NDP sing 387 n n C4D C3D NDP sing 388 n n C4D H4D NDP sing 389 n n O4D C1D NDP sing 390 n n C3D O3D NDP sing 391 n n C3D C2D NDP sing 392 n n C3D H3D NDP sing 393 n n O3D HO3N NDP sing 394 n n C2D O2D NDP sing 395 n n C2D C1D NDP sing 396 n n C2D H2D NDP sing 397 n n O2D HO2N NDP sing 398 n n C1D N1N NDP sing 399 n n C1D H1D NDP sing 400 n n N1N C2N NDP sing 401 n n N1N C6N NDP sing 402 n n C2N C3N NDP doub 403 n n C2N H2N NDP sing 404 n n C3N C7N NDP sing 405 n n C3N C4N NDP sing 406 n n C7N O7N NDP doub 407 n n C7N N7N NDP sing 408 n n N7N H71N NDP sing 409 n n N7N H72N NDP sing 410 n n C4N C5N NDP sing 411 n n C4N H41N NDP sing 412 n n C4N H42N NDP sing 413 n n C5N C6N NDP doub 414 n n C5N H5N NDP sing 415 n n C6N H6N NDP sing 416 n n P2B O1X NDP doub 417 n n P2B O2X NDP sing 418 n n P2B O3X NDP sing 419 n n O2X HOP2 NDP sing 420 n n O3X HOP3 NDP sing 421 n n # _atom_sites.entry_id 7Y8L _atom_sites.fract_transf_matrix[1][1] 0.007712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 301 301 NDP NDP . F 3 4IS A 1 302 302 4IS 4IS . G 2 NDP B 1 301 301 NDP NDP . H 3 4IS B 1 302 302 4IS 4IS . I 4 NAP C 1 301 301 NAP NDP . J 3 4IS C 1 302 302 4IS 4IS . K 3 4IS C 1 303 303 4IS 4IS . L 2 NDP D 1 301 301 NDP NDP . M 5 HOH A 1 401 401 HOH HOH . M 5 HOH A 2 402 402 HOH HOH . M 5 HOH A 3 403 403 HOH HOH . M 5 HOH A 4 404 404 HOH HOH . M 5 HOH A 5 405 405 HOH HOH . M 5 HOH A 6 406 406 HOH HOH . M 5 HOH A 7 407 407 HOH HOH . M 5 HOH A 8 408 408 HOH HOH . M 5 HOH A 9 409 409 HOH HOH . M 5 HOH A 10 410 410 HOH HOH . M 5 HOH A 11 411 411 HOH HOH . M 5 HOH A 12 412 412 HOH HOH . M 5 HOH A 13 413 413 HOH HOH . M 5 HOH A 14 414 414 HOH HOH . M 5 HOH A 15 415 415 HOH HOH . M 5 HOH A 16 416 416 HOH HOH . M 5 HOH A 17 417 417 HOH HOH . M 5 HOH A 18 418 418 HOH HOH . M 5 HOH A 19 419 419 HOH HOH . M 5 HOH A 20 420 420 HOH HOH . M 5 HOH A 21 421 421 HOH HOH . M 5 HOH A 22 422 422 HOH HOH . M 5 HOH A 23 423 423 HOH HOH . M 5 HOH A 24 424 424 HOH HOH . M 5 HOH A 25 425 425 HOH HOH . M 5 HOH A 26 426 426 HOH HOH . M 5 HOH A 27 427 427 HOH HOH . M 5 HOH A 28 428 428 HOH HOH . M 5 HOH A 29 429 429 HOH HOH . M 5 HOH A 30 430 430 HOH HOH . M 5 HOH A 31 431 431 HOH HOH . M 5 HOH A 32 432 432 HOH HOH . M 5 HOH A 33 433 433 HOH HOH . M 5 HOH A 34 434 434 HOH HOH . M 5 HOH A 35 435 435 HOH HOH . M 5 HOH A 36 436 436 HOH HOH . M 5 HOH A 37 437 437 HOH HOH . M 5 HOH A 38 438 438 HOH HOH . M 5 HOH A 39 439 439 HOH HOH . M 5 HOH A 40 440 440 HOH HOH . M 5 HOH A 41 441 441 HOH HOH . M 5 HOH A 42 442 442 HOH HOH . M 5 HOH A 43 443 443 HOH HOH . M 5 HOH A 44 444 444 HOH HOH . M 5 HOH A 45 445 445 HOH HOH . M 5 HOH A 46 446 446 HOH HOH . M 5 HOH A 47 447 447 HOH HOH . M 5 HOH A 48 448 448 HOH HOH . M 5 HOH A 49 449 449 HOH HOH . M 5 HOH A 50 450 450 HOH HOH . M 5 HOH A 51 451 451 HOH HOH . M 5 HOH A 52 452 452 HOH HOH . M 5 HOH A 53 453 453 HOH HOH . M 5 HOH A 54 454 454 HOH HOH . N 5 HOH B 1 401 401 HOH HOH . N 5 HOH B 2 402 402 HOH HOH . N 5 HOH B 3 403 403 HOH HOH . N 5 HOH B 4 404 404 HOH HOH . N 5 HOH B 5 405 405 HOH HOH . N 5 HOH B 6 406 406 HOH HOH . N 5 HOH B 7 407 407 HOH HOH . N 5 HOH B 8 408 408 HOH HOH . N 5 HOH B 9 409 409 HOH HOH . N 5 HOH B 10 410 410 HOH HOH . N 5 HOH B 11 411 411 HOH HOH . N 5 HOH B 12 412 412 HOH HOH . N 5 HOH B 13 413 413 HOH HOH . N 5 HOH B 14 414 414 HOH HOH . N 5 HOH B 15 415 415 HOH HOH . N 5 HOH B 16 416 416 HOH HOH . N 5 HOH B 17 417 417 HOH HOH . N 5 HOH B 18 418 418 HOH HOH . N 5 HOH B 19 419 419 HOH HOH . N 5 HOH B 20 420 420 HOH HOH . N 5 HOH B 21 421 421 HOH HOH . N 5 HOH B 22 422 422 HOH HOH . N 5 HOH B 23 423 423 HOH HOH . N 5 HOH B 24 424 424 HOH HOH . N 5 HOH B 25 425 425 HOH HOH . N 5 HOH B 26 426 426 HOH HOH . N 5 HOH B 27 427 427 HOH HOH . N 5 HOH B 28 428 428 HOH HOH . O 5 HOH C 1 401 401 HOH HOH . O 5 HOH C 2 402 402 HOH HOH . O 5 HOH C 3 403 403 HOH HOH . O 5 HOH C 4 404 404 HOH HOH . O 5 HOH C 5 405 405 HOH HOH . O 5 HOH C 6 406 406 HOH HOH . O 5 HOH C 7 407 407 HOH HOH . O 5 HOH C 8 408 408 HOH HOH . O 5 HOH C 9 409 409 HOH HOH . O 5 HOH C 10 410 410 HOH HOH . O 5 HOH C 11 411 411 HOH HOH . O 5 HOH C 12 412 412 HOH HOH . O 5 HOH C 13 413 413 HOH HOH . O 5 HOH C 14 414 414 HOH HOH . O 5 HOH C 15 415 415 HOH HOH . O 5 HOH C 16 416 416 HOH HOH . O 5 HOH C 17 417 417 HOH HOH . O 5 HOH C 18 418 418 HOH HOH . O 5 HOH C 19 419 419 HOH HOH . O 5 HOH C 20 420 420 HOH HOH . O 5 HOH C 21 421 421 HOH HOH . O 5 HOH C 22 422 422 HOH HOH . P 5 HOH D 1 401 401 HOH HOH . P 5 HOH D 2 402 402 HOH HOH . P 5 HOH D 3 403 403 HOH HOH . P 5 HOH D 4 404 404 HOH HOH . P 5 HOH D 5 405 405 HOH HOH . P 5 HOH D 6 406 406 HOH HOH . P 5 HOH D 7 407 407 HOH HOH . P 5 HOH D 8 408 408 HOH HOH . P 5 HOH D 9 409 409 HOH HOH . P 5 HOH D 10 410 410 HOH HOH . P 5 HOH D 11 411 411 HOH HOH . P 5 HOH D 12 412 412 HOH HOH . P 5 HOH D 13 413 413 HOH HOH . P 5 HOH D 14 414 414 HOH HOH . P 5 HOH D 15 415 415 HOH HOH . P 5 HOH D 16 416 416 HOH HOH . P 5 HOH D 17 417 417 HOH HOH . P 5 HOH D 18 418 418 HOH HOH . P 5 HOH D 19 419 419 HOH HOH . P 5 HOH D 20 420 420 HOH HOH . P 5 HOH D 21 421 421 HOH HOH . P 5 HOH D 22 422 422 HOH HOH . P 5 HOH D 23 423 423 HOH HOH . P 5 HOH D 24 424 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . G 2 56.626 -5.66 31.674 1 35.63 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . G 2 56.842 -7.087 31.327 1 55.08 ? O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . G 2 57.082 -4.622 30.719 1 55.55 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . G 2 57.254 -5.352 33.111 1 48.93 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . G 2 58 -6.408 33.75 1 67.2 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . G 2 59.22 -5.862 34.449 1 60.27 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . G 2 60.416 -6.502 33.94 1 58.21 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . G 2 59.481 -4.35 34.351 1 46.51 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . G 2 59.36 -3.776 35.643 1 38.82 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . G 2 60.896 -4.248 33.788 1 76.55 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . G 2 61.662 -3.243 34.431 1 86.69 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . G 2 61.466 -5.602 34.172 1 70.64 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . G 2 62.667 -5.993 33.444 1 71.37 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . G 2 63.156 -5.451 32.28 1 66.48 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . G 2 64.278 -5.994 31.882 1 89.15 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . G 2 64.552 -6.953 32.847 1 67.87 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . G 2 65.606 -7.875 32.996 1 66 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . G 2 66.623 -7.978 32.145 1 75.25 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . G 2 65.58 -8.689 34.078 1 61.96 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . G 2 64.56 -8.576 34.936 1 57.15 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . G 2 63.516 -7.756 34.895 1 84.89 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . G 2 63.57 -6.958 33.817 1 74.87 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . G 2 55.069 -5.435 31.92 1 53.33 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . G 2 54.003 -5.919 32.994 1 78.21 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . G 2 54.361 -5.336 34.315 1 69.54 ? O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . G 2 52.663 -5.637 32.432 1 48.78 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . G 2 54.254 -7.495 33.009 1 57.14 ? O5D NDP 301 B 1 HETATM 28 C C5D NDP . . . G 2 54.33 -8.182 34.278 1 47.52 ? C5D NDP 301 B 1 HETATM 29 C C4D NDP . . . G 2 53.738 -9.562 34.136 1 46.03 ? C4D NDP 301 B 1 HETATM 30 O O4D NDP . . . G 2 52.298 -9.476 34.266 1 49 ? O4D NDP 301 B 1 HETATM 31 C C3D NDP . . . G 2 54.028 -10.275 32.805 1 49.7 ? C3D NDP 301 B 1 HETATM 32 O O3D NDP . . . G 2 54.633 -11.539 33.035 1 49.67 ? O3D NDP 301 B 1 HETATM 33 C C2D NDP . . . G 2 52.652 -10.352 32.141 1 37.85 ? C2D NDP 301 B 1 HETATM 34 O O2D NDP . . . G 2 52.433 -11.527 31.38 1 59.26 ? O2D NDP 301 B 1 HETATM 35 C C1D NDP . . . G 2 51.674 -10.271 33.298 1 42.56 ? C1D NDP 301 B 1 HETATM 36 N N1N NDP . . . G 2 50.402 -9.616 32.895 1 40.83 ? N1N NDP 301 B 1 HETATM 37 C C2N NDP . . . G 2 50.377 -8.492 32.11 1 42.16 ? C2N NDP 301 B 1 HETATM 38 C C3N NDP . . . G 2 49.252 -7.712 32.018 1 34.47 ? C3N NDP 301 B 1 HETATM 39 C C7N NDP . . . G 2 49.276 -6.422 31.296 1 34.44 ? C7N NDP 301 B 1 HETATM 40 O O7N NDP . . . G 2 48.211 -5.85 31.058 1 43.39 ? O7N NDP 301 B 1 HETATM 41 N N7N NDP . . . G 2 50.43 -5.897 30.928 1 29.5 ? N7N NDP 301 B 1 HETATM 42 C C4N NDP . . . G 2 48.02 -8.182 32.675 1 38.42 ? C4N NDP 301 B 1 HETATM 43 C C5N NDP . . . G 2 48.193 -9.37 33.503 1 35.01 ? C5N NDP 301 B 1 HETATM 44 C C6N NDP . . . G 2 49.219 -10.148 33.307 1 29.87 ? C6N NDP 301 B 1 HETATM 45 P P2B NDP . . . G 2 62.103 -2.079 33.425 1 76.39 ? P2B NDP 301 B 1 HETATM 46 O O1X NDP . . . G 2 61.975 -2.522 31.988 1 57.81 ? O1X NDP 301 B 1 HETATM 47 O O2X NDP . . . G 2 61.21 -0.905 33.726 1 88.29 ? O2X NDP 301 B 1 HETATM 48 O O3X NDP . . . G 2 63.535 -1.826 33.81 1 73.87 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #