data_7Y8L
#
_model_server_result.job_id            JQjwxHPmnSav9X64ysmidQ 
_model_server_result.datetime_utc      '2025-02-05 07:00:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7y8l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":301}' 
#
_entry.id    7Y8L 
#
_exptl.entry_id    7Y8L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.58 
_cell.angle_gamma         90 
_cell.entry_id            7Y8L 
_cell.length_a            129.66 
_cell.length_b            63.151 
_cell.length_c            134.637 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7Y8L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,E,F,G,H,M,N 2 1 
C,D,I,J,K,L,O,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 260 n n 
PA O2A NAP sing 261 n n 
PA O5B NAP sing 262 n n 
PA O3 NAP sing 263 n n 
O2A HOA2 NAP sing 264 n n 
O5B C5B NAP sing 265 n n 
C5B C4B NAP sing 266 n n 
C5B H51A NAP sing 267 n n 
C5B H52A NAP sing 268 n n 
C4B O4B NAP sing 269 n n 
C4B C3B NAP sing 270 n n 
C4B H4B NAP sing 271 n n 
O4B C1B NAP sing 272 n n 
C3B O3B NAP sing 273 n n 
C3B C2B NAP sing 274 n n 
C3B H3B NAP sing 275 n n 
O3B HO3A NAP sing 276 n n 
C2B O2B NAP sing 277 n n 
C2B C1B NAP sing 278 n n 
C2B H2B NAP sing 279 n n 
O2B P2B NAP sing 280 n n 
C1B N9A NAP sing 281 n n 
C1B H1B NAP sing 282 n n 
N9A C8A NAP sing 283 n y 
N9A C4A NAP sing 284 n y 
C8A N7A NAP doub 285 n y 
C8A H8A NAP sing 286 n n 
N7A C5A NAP sing 287 n y 
C5A C6A NAP sing 288 n y 
C5A C4A NAP doub 289 n y 
C6A N6A NAP sing 290 n n 
C6A N1A NAP doub 291 n y 
N6A H61A NAP sing 292 n n 
N6A H62A NAP sing 293 n n 
N1A C2A NAP sing 294 n y 
C2A N3A NAP doub 295 n y 
C2A H2A NAP sing 296 n n 
N3A C4A NAP sing 297 n y 
O3 PN NAP sing 298 n n 
PN O1N NAP doub 299 n n 
PN O2N NAP sing 300 n n 
PN O5D NAP sing 301 n n 
O5D C5D NAP sing 302 n n 
C5D C4D NAP sing 303 n n 
C5D H51N NAP sing 304 n n 
C5D H52N NAP sing 305 n n 
C4D O4D NAP sing 306 n n 
C4D C3D NAP sing 307 n n 
C4D H4D NAP sing 308 n n 
O4D C1D NAP sing 309 n n 
C3D O3D NAP sing 310 n n 
C3D C2D NAP sing 311 n n 
C3D H3D NAP sing 312 n n 
O3D HO3N NAP sing 313 n n 
C2D O2D NAP sing 314 n n 
C2D C1D NAP sing 315 n n 
C2D H2D NAP sing 316 n n 
O2D HO2N NAP sing 317 n n 
C1D N1N NAP sing 318 n n 
C1D H1D NAP sing 319 n n 
N1N C2N NAP sing 320 n y 
N1N C6N NAP doub 321 n y 
C2N C3N NAP doub 322 n y 
C2N H2N NAP sing 323 n n 
C3N C7N NAP sing 324 n n 
C3N C4N NAP sing 325 n y 
C7N O7N NAP doub 326 n n 
C7N N7N NAP sing 327 n n 
N7N H71N NAP sing 328 n n 
N7N H72N NAP sing 329 n n 
C4N C5N NAP doub 330 n y 
C4N H4N NAP sing 331 n n 
C5N C6N NAP sing 332 n y 
C5N H5N NAP sing 333 n n 
C6N H6N NAP sing 334 n n 
P2B O1X NAP doub 335 n n 
P2B O2X NAP sing 336 n n 
P2B O3X NAP sing 337 n n 
O2X HOP2 NAP sing 338 n n 
O3X HOP3 NAP sing 339 n n 
#
_atom_sites.entry_id                     7Y8L 
_atom_sites.fract_transf_matrix[1][1]    0.007712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015835 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 301 301 NDP NDP . 
F 3 4IS A 1 302 302 4IS 4IS . 
G 2 NDP B 1 301 301 NDP NDP . 
H 3 4IS B 1 302 302 4IS 4IS . 
I 4 NAP C 1 301 301 NAP NDP . 
J 3 4IS C 1 302 302 4IS 4IS . 
K 3 4IS C 1 303 303 4IS 4IS . 
L 2 NDP D 1 301 301 NDP NDP . 
M 5 HOH A 1 401 401 HOH HOH . 
M 5 HOH A 2 402 402 HOH HOH . 
M 5 HOH A 3 403 403 HOH HOH . 
M 5 HOH A 4 404 404 HOH HOH . 
M 5 HOH A 5 405 405 HOH HOH . 
M 5 HOH A 6 406 406 HOH HOH . 
M 5 HOH A 7 407 407 HOH HOH . 
M 5 HOH A 8 408 408 HOH HOH . 
M 5 HOH A 9 409 409 HOH HOH . 
M 5 HOH A 10 410 410 HOH HOH . 
M 5 HOH A 11 411 411 HOH HOH . 
M 5 HOH A 12 412 412 HOH HOH . 
M 5 HOH A 13 413 413 HOH HOH . 
M 5 HOH A 14 414 414 HOH HOH . 
M 5 HOH A 15 415 415 HOH HOH . 
M 5 HOH A 16 416 416 HOH HOH . 
M 5 HOH A 17 417 417 HOH HOH . 
M 5 HOH A 18 418 418 HOH HOH . 
M 5 HOH A 19 419 419 HOH HOH . 
M 5 HOH A 20 420 420 HOH HOH . 
M 5 HOH A 21 421 421 HOH HOH . 
M 5 HOH A 22 422 422 HOH HOH . 
M 5 HOH A 23 423 423 HOH HOH . 
M 5 HOH A 24 424 424 HOH HOH . 
M 5 HOH A 25 425 425 HOH HOH . 
M 5 HOH A 26 426 426 HOH HOH . 
M 5 HOH A 27 427 427 HOH HOH . 
M 5 HOH A 28 428 428 HOH HOH . 
M 5 HOH A 29 429 429 HOH HOH . 
M 5 HOH A 30 430 430 HOH HOH . 
M 5 HOH A 31 431 431 HOH HOH . 
M 5 HOH A 32 432 432 HOH HOH . 
M 5 HOH A 33 433 433 HOH HOH . 
M 5 HOH A 34 434 434 HOH HOH . 
M 5 HOH A 35 435 435 HOH HOH . 
M 5 HOH A 36 436 436 HOH HOH . 
M 5 HOH A 37 437 437 HOH HOH . 
M 5 HOH A 38 438 438 HOH HOH . 
M 5 HOH A 39 439 439 HOH HOH . 
M 5 HOH A 40 440 440 HOH HOH . 
M 5 HOH A 41 441 441 HOH HOH . 
M 5 HOH A 42 442 442 HOH HOH . 
M 5 HOH A 43 443 443 HOH HOH . 
M 5 HOH A 44 444 444 HOH HOH . 
M 5 HOH A 45 445 445 HOH HOH . 
M 5 HOH A 46 446 446 HOH HOH . 
M 5 HOH A 47 447 447 HOH HOH . 
M 5 HOH A 48 448 448 HOH HOH . 
M 5 HOH A 49 449 449 HOH HOH . 
M 5 HOH A 50 450 450 HOH HOH . 
M 5 HOH A 51 451 451 HOH HOH . 
M 5 HOH A 52 452 452 HOH HOH . 
M 5 HOH A 53 453 453 HOH HOH . 
M 5 HOH A 54 454 454 HOH HOH . 
N 5 HOH B 1 401 401 HOH HOH . 
N 5 HOH B 2 402 402 HOH HOH . 
N 5 HOH B 3 403 403 HOH HOH . 
N 5 HOH B 4 404 404 HOH HOH . 
N 5 HOH B 5 405 405 HOH HOH . 
N 5 HOH B 6 406 406 HOH HOH . 
N 5 HOH B 7 407 407 HOH HOH . 
N 5 HOH B 8 408 408 HOH HOH . 
N 5 HOH B 9 409 409 HOH HOH . 
N 5 HOH B 10 410 410 HOH HOH . 
N 5 HOH B 11 411 411 HOH HOH . 
N 5 HOH B 12 412 412 HOH HOH . 
N 5 HOH B 13 413 413 HOH HOH . 
N 5 HOH B 14 414 414 HOH HOH . 
N 5 HOH B 15 415 415 HOH HOH . 
N 5 HOH B 16 416 416 HOH HOH . 
N 5 HOH B 17 417 417 HOH HOH . 
N 5 HOH B 18 418 418 HOH HOH . 
N 5 HOH B 19 419 419 HOH HOH . 
N 5 HOH B 20 420 420 HOH HOH . 
N 5 HOH B 21 421 421 HOH HOH . 
N 5 HOH B 22 422 422 HOH HOH . 
N 5 HOH B 23 423 423 HOH HOH . 
N 5 HOH B 24 424 424 HOH HOH . 
N 5 HOH B 25 425 425 HOH HOH . 
N 5 HOH B 26 426 426 HOH HOH . 
N 5 HOH B 27 427 427 HOH HOH . 
N 5 HOH B 28 428 428 HOH HOH . 
O 5 HOH C 1 401 401 HOH HOH . 
O 5 HOH C 2 402 402 HOH HOH . 
O 5 HOH C 3 403 403 HOH HOH . 
O 5 HOH C 4 404 404 HOH HOH . 
O 5 HOH C 5 405 405 HOH HOH . 
O 5 HOH C 6 406 406 HOH HOH . 
O 5 HOH C 7 407 407 HOH HOH . 
O 5 HOH C 8 408 408 HOH HOH . 
O 5 HOH C 9 409 409 HOH HOH . 
O 5 HOH C 10 410 410 HOH HOH . 
O 5 HOH C 11 411 411 HOH HOH . 
O 5 HOH C 12 412 412 HOH HOH . 
O 5 HOH C 13 413 413 HOH HOH . 
O 5 HOH C 14 414 414 HOH HOH . 
O 5 HOH C 15 415 415 HOH HOH . 
O 5 HOH C 16 416 416 HOH HOH . 
O 5 HOH C 17 417 417 HOH HOH . 
O 5 HOH C 18 418 418 HOH HOH . 
O 5 HOH C 19 419 419 HOH HOH . 
O 5 HOH C 20 420 420 HOH HOH . 
O 5 HOH C 21 421 421 HOH HOH . 
O 5 HOH C 22 422 422 HOH HOH . 
P 5 HOH D 1 401 401 HOH HOH . 
P 5 HOH D 2 402 402 HOH HOH . 
P 5 HOH D 3 403 403 HOH HOH . 
P 5 HOH D 4 404 404 HOH HOH . 
P 5 HOH D 5 405 405 HOH HOH . 
P 5 HOH D 6 406 406 HOH HOH . 
P 5 HOH D 7 407 407 HOH HOH . 
P 5 HOH D 8 408 408 HOH HOH . 
P 5 HOH D 9 409 409 HOH HOH . 
P 5 HOH D 10 410 410 HOH HOH . 
P 5 HOH D 11 411 411 HOH HOH . 
P 5 HOH D 12 412 412 HOH HOH . 
P 5 HOH D 13 413 413 HOH HOH . 
P 5 HOH D 14 414 414 HOH HOH . 
P 5 HOH D 15 415 415 HOH HOH . 
P 5 HOH D 16 416 416 HOH HOH . 
P 5 HOH D 17 417 417 HOH HOH . 
P 5 HOH D 18 418 418 HOH HOH . 
P 5 HOH D 19 419 419 HOH HOH . 
P 5 HOH D 20 420 420 HOH HOH . 
P 5 HOH D 21 421 421 HOH HOH . 
P 5 HOH D 22 422 422 HOH HOH . 
P 5 HOH D 23 423 423 HOH HOH . 
P 5 HOH D 24 424 424 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . I 4 21.857 -31.536 56.076 1 129.29 ? PA NAP 301 C 1 
HETATM 2 O O1A NAP . . . I 4 21.94 -30.347 56.96 1 52.71 ? O1A NAP 301 C 1 
HETATM 3 O O2A NAP . . . I 4 20.752 -31.657 55.09 1 63.27 ? O2A NAP 301 C 1 
HETATM 4 O O5B NAP . . . I 4 21.963 -32.857 56.959 1 61.02 ? O5B NAP 301 C 1 
HETATM 5 C C5B NAP . . . I 4 23.285 -33.109 57.476 1 59.36 ? C5B NAP 301 C 1 
HETATM 6 C C4B NAP . . . I 4 23.246 -34.173 58.538 1 58.64 ? C4B NAP 301 C 1 
HETATM 7 O O4B NAP . . . I 4 22.632 -33.637 59.73 1 62.82 ? O4B NAP 301 C 1 
HETATM 8 C C3B NAP . . . I 4 22.482 -35.461 58.201 1 63.3 ? C3B NAP 301 C 1 
HETATM 9 O O3B NAP . . . I 4 23.4 -36.547 58.218 1 50.93 ? O3B NAP 301 C 1 
HETATM 10 C C2B NAP . . . I 4 21.384 -35.532 59.263 1 57.87 ? C2B NAP 301 C 1 
HETATM 11 O O2B NAP . . . I 4 21.227 -36.851 59.755 1 70.33 ? O2B NAP 301 C 1 
HETATM 12 C C1B NAP . . . I 4 21.987 -34.696 60.381 1 51.59 ? C1B NAP 301 C 1 
HETATM 13 N N9A NAP . . . I 4 21.032 -34.144 61.331 1 63.68 ? N9A NAP 301 C 1 
HETATM 14 C C8A NAP . . . I 4 20.166 -33.102 61.126 1 59.43 ? C8A NAP 301 C 1 
HETATM 15 N N7A NAP . . . I 4 19.441 -32.814 62.176 1 48.26 ? N7A NAP 301 C 1 
HETATM 16 C C5A NAP . . . I 4 19.856 -33.721 63.137 1 60.43 ? C5A NAP 301 C 1 
HETATM 17 C C6A NAP . . . I 4 19.466 -33.932 64.473 1 65.98 ? C6A NAP 301 C 1 
HETATM 18 N N6A NAP . . . I 4 18.535 -33.217 65.096 1 72.28 ? N6A NAP 301 C 1 
HETATM 19 N N1A NAP . . . I 4 20.081 -34.926 65.154 1 60.75 ? N1A NAP 301 C 1 
HETATM 20 C C2A NAP . . . I 4 21.015 -35.646 64.524 1 54.35 ? C2A NAP 301 C 1 
HETATM 21 N N3A NAP . . . I 4 21.466 -35.537 63.28 1 50.63 ? N3A NAP 301 C 1 
HETATM 22 C C4A NAP . . . I 4 20.839 -34.546 62.629 1 58.57 ? C4A NAP 301 C 1 
HETATM 23 O O3 NAP . . . I 4 23.229 -31.623 55.276 1 64.51 ? O3 NAP 301 C 1 
HETATM 24 P PN NAP . . . I 4 23.992 -30.617 54.313 1 35.31 ? PN NAP 301 C 1 
HETATM 25 O O1N NAP . . . I 4 25.177 -31.359 53.838 1 47.64 ? O1N NAP 301 C 1 
HETATM 26 O O2N NAP . . . I 4 23.037 -30.064 53.318 1 44.19 ? O2N NAP 301 C 1 
HETATM 27 O O5D NAP . . . I 4 24.442 -29.468 55.314 1 44.42 ? O5D NAP 301 C 1 
HETATM 28 C C5D NAP . . . I 4 25.362 -29.757 56.392 1 45.13 ? C5D NAP 301 C 1 
HETATM 29 C C4D NAP . . . I 4 25.833 -28.462 57.008 1 43.96 ? C4D NAP 301 C 1 
HETATM 30 O O4D NAP . . . I 4 26.69 -27.777 56.062 1 40.05 ? O4D NAP 301 C 1 
HETATM 31 C C3D NAP . . . I 4 24.738 -27.461 57.406 1 41.67 ? C3D NAP 301 C 1 
HETATM 32 O O3D NAP . . . I 4 25.009 -26.907 58.687 1 45.38 ? O3D NAP 301 C 1 
HETATM 33 C C2D NAP . . . I 4 24.791 -26.431 56.277 1 37.82 ? C2D NAP 301 C 1 
HETATM 34 O O2D NAP . . . I 4 24.379 -25.127 56.654 1 46.75 ? O2D NAP 301 C 1 
HETATM 35 C C1D NAP . . . I 4 26.258 -26.457 55.88 1 42.64 ? C1D NAP 301 C 1 
HETATM 36 N N1N NAP . . . I 4 26.467 -26.094 54.454 1 45.71 ? N1N NAP 301 C 1 
HETATM 37 C C2N NAP . . . I 4 25.593 -26.486 53.477 1 38.1 ? C2N NAP 301 C 1 
HETATM 38 C C3N NAP . . . I 4 25.977 -26.545 52.169 1 45.38 ? C3N NAP 301 C 1 
HETATM 39 C C7N NAP . . . I 4 25.144 -27.248 51.174 1 44.61 ? C7N NAP 301 C 1 
HETATM 40 O O7N NAP . . . I 4 25.22 -26.916 49.992 1 50.94 ? O7N NAP 301 C 1 
HETATM 41 N N7N NAP . . . I 4 24.352 -28.233 51.563 1 43.97 ? N7N NAP 301 C 1 
HETATM 42 C C4N NAP . . . I 4 27.244 -25.9 51.783 1 49.28 ? C4N NAP 301 C 1 
HETATM 43 C C5N NAP . . . I 4 28.038 -25.377 52.897 1 46.17 ? C5N NAP 301 C 1 
HETATM 44 C C6N NAP . . . I 4 27.557 -25.348 54.11 1 41.66 ? C6N NAP 301 C 1 
HETATM 45 P P2B NAP . . . I 4 20.347 -37.824 58.836 1 63.45 ? P2B NAP 301 C 1 
HETATM 46 O O1X NAP . . . I 4 19.918 -38.787 59.894 1 54.17 ? O1X NAP 301 C 1 
HETATM 47 O O2X NAP . . . I 4 21.23 -38.467 57.803 1 54.05 ? O2X NAP 301 C 1 
HETATM 48 O O3X NAP . . . I 4 19.18 -37.093 58.218 1 63.66 ? O3X NAP 301 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#