data_7Y8L # _model_server_result.job_id 6rKVmBZwzxqDgxzyfnD8Gw _model_server_result.datetime_utc '2025-02-05 06:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":301}' # _entry.id 7Y8L # _exptl.entry_id 7Y8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.58 _cell.angle_gamma 90 _cell.entry_id 7Y8L _cell.length_a 129.66 _cell.length_b 63.151 _cell.length_c 134.637 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,E,F,G,H,M,N 2 1 C,D,I,J,K,L,O,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 L N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 340 n n PA O2A NDP sing 341 n n PA O5B NDP sing 342 n n PA O3 NDP sing 343 n n O2A HOA2 NDP sing 344 n n O5B C5B NDP sing 345 n n C5B C4B NDP sing 346 n n C5B H51A NDP sing 347 n n C5B H52A NDP sing 348 n n C4B O4B NDP sing 349 n n C4B C3B NDP sing 350 n n C4B H4B NDP sing 351 n n O4B C1B NDP sing 352 n n C3B O3B NDP sing 353 n n C3B C2B NDP sing 354 n n C3B H3B NDP sing 355 n n O3B HO3A NDP sing 356 n n C2B O2B NDP sing 357 n n C2B C1B NDP sing 358 n n C2B H2B NDP sing 359 n n O2B P2B NDP sing 360 n n C1B N9A NDP sing 361 n n C1B H1B NDP sing 362 n n N9A C8A NDP sing 363 n y N9A C4A NDP sing 364 n y C8A N7A NDP doub 365 n y C8A H8A NDP sing 366 n n N7A C5A NDP sing 367 n y C5A C6A NDP sing 368 n y C5A C4A NDP doub 369 n y C6A N6A NDP sing 370 n n C6A N1A NDP doub 371 n y N6A H61A NDP sing 372 n n N6A H62A NDP sing 373 n n N1A C2A NDP sing 374 n y C2A N3A NDP doub 375 n y C2A H2A NDP sing 376 n n N3A C4A NDP sing 377 n y O3 PN NDP sing 378 n n PN O1N NDP doub 379 n n PN O2N NDP sing 380 n n PN O5D NDP sing 381 n n O2N H21N NDP sing 382 n n O5D C5D NDP sing 383 n n C5D C4D NDP sing 384 n n C5D H51N NDP sing 385 n n C5D H52N NDP sing 386 n n C4D O4D NDP sing 387 n n C4D C3D NDP sing 388 n n C4D H4D NDP sing 389 n n O4D C1D NDP sing 390 n n C3D O3D NDP sing 391 n n C3D C2D NDP sing 392 n n C3D H3D NDP sing 393 n n O3D HO3N NDP sing 394 n n C2D O2D NDP sing 395 n n C2D C1D NDP sing 396 n n C2D H2D NDP sing 397 n n O2D HO2N NDP sing 398 n n C1D N1N NDP sing 399 n n C1D H1D NDP sing 400 n n N1N C2N NDP sing 401 n n N1N C6N NDP sing 402 n n C2N C3N NDP doub 403 n n C2N H2N NDP sing 404 n n C3N C7N NDP sing 405 n n C3N C4N NDP sing 406 n n C7N O7N NDP doub 407 n n C7N N7N NDP sing 408 n n N7N H71N NDP sing 409 n n N7N H72N NDP sing 410 n n C4N C5N NDP sing 411 n n C4N H41N NDP sing 412 n n C4N H42N NDP sing 413 n n C5N C6N NDP doub 414 n n C5N H5N NDP sing 415 n n C6N H6N NDP sing 416 n n P2B O1X NDP doub 417 n n P2B O2X NDP sing 418 n n P2B O3X NDP sing 419 n n O2X HOP2 NDP sing 420 n n O3X HOP3 NDP sing 421 n n # _atom_sites.entry_id 7Y8L _atom_sites.fract_transf_matrix[1][1] 0.007712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 301 301 NDP NDP . F 3 4IS A 1 302 302 4IS 4IS . G 2 NDP B 1 301 301 NDP NDP . H 3 4IS B 1 302 302 4IS 4IS . I 4 NAP C 1 301 301 NAP NDP . J 3 4IS C 1 302 302 4IS 4IS . K 3 4IS C 1 303 303 4IS 4IS . L 2 NDP D 1 301 301 NDP NDP . M 5 HOH A 1 401 401 HOH HOH . M 5 HOH A 2 402 402 HOH HOH . M 5 HOH A 3 403 403 HOH HOH . M 5 HOH A 4 404 404 HOH HOH . M 5 HOH A 5 405 405 HOH HOH . M 5 HOH A 6 406 406 HOH HOH . M 5 HOH A 7 407 407 HOH HOH . M 5 HOH A 8 408 408 HOH HOH . M 5 HOH A 9 409 409 HOH HOH . M 5 HOH A 10 410 410 HOH HOH . M 5 HOH A 11 411 411 HOH HOH . M 5 HOH A 12 412 412 HOH HOH . M 5 HOH A 13 413 413 HOH HOH . M 5 HOH A 14 414 414 HOH HOH . M 5 HOH A 15 415 415 HOH HOH . M 5 HOH A 16 416 416 HOH HOH . M 5 HOH A 17 417 417 HOH HOH . M 5 HOH A 18 418 418 HOH HOH . M 5 HOH A 19 419 419 HOH HOH . M 5 HOH A 20 420 420 HOH HOH . M 5 HOH A 21 421 421 HOH HOH . M 5 HOH A 22 422 422 HOH HOH . M 5 HOH A 23 423 423 HOH HOH . M 5 HOH A 24 424 424 HOH HOH . M 5 HOH A 25 425 425 HOH HOH . M 5 HOH A 26 426 426 HOH HOH . M 5 HOH A 27 427 427 HOH HOH . M 5 HOH A 28 428 428 HOH HOH . M 5 HOH A 29 429 429 HOH HOH . M 5 HOH A 30 430 430 HOH HOH . M 5 HOH A 31 431 431 HOH HOH . M 5 HOH A 32 432 432 HOH HOH . M 5 HOH A 33 433 433 HOH HOH . M 5 HOH A 34 434 434 HOH HOH . M 5 HOH A 35 435 435 HOH HOH . M 5 HOH A 36 436 436 HOH HOH . M 5 HOH A 37 437 437 HOH HOH . M 5 HOH A 38 438 438 HOH HOH . M 5 HOH A 39 439 439 HOH HOH . M 5 HOH A 40 440 440 HOH HOH . M 5 HOH A 41 441 441 HOH HOH . M 5 HOH A 42 442 442 HOH HOH . M 5 HOH A 43 443 443 HOH HOH . M 5 HOH A 44 444 444 HOH HOH . M 5 HOH A 45 445 445 HOH HOH . M 5 HOH A 46 446 446 HOH HOH . M 5 HOH A 47 447 447 HOH HOH . M 5 HOH A 48 448 448 HOH HOH . M 5 HOH A 49 449 449 HOH HOH . M 5 HOH A 50 450 450 HOH HOH . M 5 HOH A 51 451 451 HOH HOH . M 5 HOH A 52 452 452 HOH HOH . M 5 HOH A 53 453 453 HOH HOH . M 5 HOH A 54 454 454 HOH HOH . N 5 HOH B 1 401 401 HOH HOH . N 5 HOH B 2 402 402 HOH HOH . N 5 HOH B 3 403 403 HOH HOH . N 5 HOH B 4 404 404 HOH HOH . N 5 HOH B 5 405 405 HOH HOH . N 5 HOH B 6 406 406 HOH HOH . N 5 HOH B 7 407 407 HOH HOH . N 5 HOH B 8 408 408 HOH HOH . N 5 HOH B 9 409 409 HOH HOH . N 5 HOH B 10 410 410 HOH HOH . N 5 HOH B 11 411 411 HOH HOH . N 5 HOH B 12 412 412 HOH HOH . N 5 HOH B 13 413 413 HOH HOH . N 5 HOH B 14 414 414 HOH HOH . N 5 HOH B 15 415 415 HOH HOH . N 5 HOH B 16 416 416 HOH HOH . N 5 HOH B 17 417 417 HOH HOH . N 5 HOH B 18 418 418 HOH HOH . N 5 HOH B 19 419 419 HOH HOH . N 5 HOH B 20 420 420 HOH HOH . N 5 HOH B 21 421 421 HOH HOH . N 5 HOH B 22 422 422 HOH HOH . N 5 HOH B 23 423 423 HOH HOH . N 5 HOH B 24 424 424 HOH HOH . N 5 HOH B 25 425 425 HOH HOH . N 5 HOH B 26 426 426 HOH HOH . N 5 HOH B 27 427 427 HOH HOH . N 5 HOH B 28 428 428 HOH HOH . O 5 HOH C 1 401 401 HOH HOH . O 5 HOH C 2 402 402 HOH HOH . O 5 HOH C 3 403 403 HOH HOH . O 5 HOH C 4 404 404 HOH HOH . O 5 HOH C 5 405 405 HOH HOH . O 5 HOH C 6 406 406 HOH HOH . O 5 HOH C 7 407 407 HOH HOH . O 5 HOH C 8 408 408 HOH HOH . O 5 HOH C 9 409 409 HOH HOH . O 5 HOH C 10 410 410 HOH HOH . O 5 HOH C 11 411 411 HOH HOH . O 5 HOH C 12 412 412 HOH HOH . O 5 HOH C 13 413 413 HOH HOH . O 5 HOH C 14 414 414 HOH HOH . O 5 HOH C 15 415 415 HOH HOH . O 5 HOH C 16 416 416 HOH HOH . O 5 HOH C 17 417 417 HOH HOH . O 5 HOH C 18 418 418 HOH HOH . O 5 HOH C 19 419 419 HOH HOH . O 5 HOH C 20 420 420 HOH HOH . O 5 HOH C 21 421 421 HOH HOH . O 5 HOH C 22 422 422 HOH HOH . P 5 HOH D 1 401 401 HOH HOH . P 5 HOH D 2 402 402 HOH HOH . P 5 HOH D 3 403 403 HOH HOH . P 5 HOH D 4 404 404 HOH HOH . P 5 HOH D 5 405 405 HOH HOH . P 5 HOH D 6 406 406 HOH HOH . P 5 HOH D 7 407 407 HOH HOH . P 5 HOH D 8 408 408 HOH HOH . P 5 HOH D 9 409 409 HOH HOH . P 5 HOH D 10 410 410 HOH HOH . P 5 HOH D 11 411 411 HOH HOH . P 5 HOH D 12 412 412 HOH HOH . P 5 HOH D 13 413 413 HOH HOH . P 5 HOH D 14 414 414 HOH HOH . P 5 HOH D 15 415 415 HOH HOH . P 5 HOH D 16 416 416 HOH HOH . P 5 HOH D 17 417 417 HOH HOH . P 5 HOH D 18 418 418 HOH HOH . P 5 HOH D 19 419 419 HOH HOH . P 5 HOH D 20 420 420 HOH HOH . P 5 HOH D 21 421 421 HOH HOH . P 5 HOH D 22 422 422 HOH HOH . P 5 HOH D 23 423 423 HOH HOH . P 5 HOH D 24 424 424 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . L 2 17.236 10.255 39.439 1 37.82 ? PA NDP 301 D 1 HETATM 2 O O1A NDP . . . L 2 16.295 9.107 39.417 1 45.23 ? O1A NDP 301 D 1 HETATM 3 O O2A NDP . . . L 2 17.859 10.678 40.718 1 36.53 ? O2A NDP 301 D 1 HETATM 4 O O5B NDP . . . L 2 16.582 11.509 38.716 1 46.18 ? O5B NDP 301 D 1 HETATM 5 C C5B NDP . . . L 2 16.654 11.529 37.277 1 37.86 ? C5B NDP 301 D 1 HETATM 6 C C4B NDP . . . L 2 16.15 12.854 36.778 1 45.85 ? C4B NDP 301 D 1 HETATM 7 O O4B NDP . . . L 2 14.709 12.875 36.892 1 46.82 ? O4B NDP 301 D 1 HETATM 8 C C3B NDP . . . L 2 16.663 14.099 37.518 1 52.92 ? C3B NDP 301 D 1 HETATM 9 O O3B NDP . . . L 2 17.119 15.031 36.55 1 43.47 ? O3B NDP 301 D 1 HETATM 10 C C2B NDP . . . L 2 15.455 14.564 38.327 1 48.4 ? C2B NDP 301 D 1 HETATM 11 O O2B NDP . . . L 2 15.258 15.964 38.512 1 43.06 ? O2B NDP 301 D 1 HETATM 12 C C1B NDP . . . L 2 14.328 14.122 37.406 1 47.39 ? C1B NDP 301 D 1 HETATM 13 N N9A NDP . . . L 2 13.043 13.985 38.069 1 55.41 ? N9A NDP 301 D 1 HETATM 14 C C8A NDP . . . L 2 12.754 13.244 39.183 1 38.92 ? C8A NDP 301 D 1 HETATM 15 N N7A NDP . . . L 2 11.501 13.326 39.545 1 41.3 ? N7A NDP 301 D 1 HETATM 16 C C5A NDP . . . L 2 10.931 14.179 38.614 1 44.93 ? C5A NDP 301 D 1 HETATM 17 C C6A NDP . . . L 2 9.623 14.671 38.453 1 53.64 ? C6A NDP 301 D 1 HETATM 18 N N6A NDP . . . L 2 8.617 14.365 39.263 1 52.66 ? N6A NDP 301 D 1 HETATM 19 N N1A NDP . . . L 2 9.395 15.513 37.418 1 54.19 ? N1A NDP 301 D 1 HETATM 20 C C2A NDP . . . L 2 10.414 15.825 36.612 1 43.65 ? C2A NDP 301 D 1 HETATM 21 N N3A NDP . . . L 2 11.678 15.423 36.662 1 44.12 ? N3A NDP 301 D 1 HETATM 22 C C4A NDP . . . L 2 11.873 14.593 37.698 1 57.69 ? C4A NDP 301 D 1 HETATM 23 O O3 NDP . . . L 2 18.408 9.912 38.418 1 49.41 ? O3 NDP 301 D 1 HETATM 24 P PN NDP . . . L 2 19.278 8.595 38.264 1 37.58 ? PN NDP 301 D 1 HETATM 25 O O1N NDP . . . L 2 20.291 8.892 37.23 1 51.71 ? O1N NDP 301 D 1 HETATM 26 O O2N NDP . . . L 2 19.714 8.165 39.62 1 46.53 ? O2N NDP 301 D 1 HETATM 27 O O5D NDP . . . L 2 18.218 7.557 37.683 1 40.3 ? O5D NDP 301 D 1 HETATM 28 C C5D NDP . . . L 2 17.681 7.771 36.358 1 31.71 ? C5D NDP 301 D 1 HETATM 29 C C4D NDP . . . L 2 16.876 6.564 35.942 1 34.44 ? C4D NDP 301 D 1 HETATM 30 O O4D NDP . . . L 2 17.777 5.524 35.489 1 33.68 ? O4D NDP 301 D 1 HETATM 31 C C3D NDP . . . L 2 15.995 5.927 37.026 1 39.16 ? C3D NDP 301 D 1 HETATM 32 O O3D NDP . . . L 2 14.747 5.527 36.481 1 31.56 ? O3D NDP 301 D 1 HETATM 33 C C2D NDP . . . L 2 16.842 4.746 37.493 1 36.28 ? C2D NDP 301 D 1 HETATM 34 O O2D NDP . . . L 2 16.08 3.673 38.021 1 31.28 ? O2D NDP 301 D 1 HETATM 35 C C1D NDP . . . L 2 17.59 4.343 36.228 1 39.2 ? C1D NDP 301 D 1 HETATM 36 N N1N NDP . . . L 2 18.932 3.776 36.525 1 37.54 ? N1N NDP 301 D 1 HETATM 37 C C2N NDP . . . L 2 19.702 4.295 37.528 1 34.8 ? C2N NDP 301 D 1 HETATM 38 C C3N NDP . . . L 2 21.001 3.927 37.673 1 37.79 ? C3N NDP 301 D 1 HETATM 39 C C7N NDP . . . L 2 21.947 4.822 38.371 1 40.25 ? C7N NDP 301 D 1 HETATM 40 O O7N NDP . . . L 2 21.577 5.897 38.844 1 38.73 ? O7N NDP 301 D 1 HETATM 41 N N7N NDP . . . L 2 23.172 4.36 38.545 1 36.11 ? N7N NDP 301 D 1 HETATM 42 C C4N NDP . . . L 2 21.416 2.613 37.138 1 35.57 ? C4N NDP 301 D 1 HETATM 43 C C5N NDP . . . L 2 20.54 2.129 36.076 1 36.06 ? C5N NDP 301 D 1 HETATM 44 C C6N NDP . . . L 2 19.419 2.738 35.773 1 42.38 ? C6N NDP 301 D 1 HETATM 45 P P2B NDP . . . L 2 16.334 16.976 39.163 1 63.21 ? P2B NDP 301 D 1 HETATM 46 O O1X NDP . . . L 2 16.036 17.111 40.635 1 69.33 ? O1X NDP 301 D 1 HETATM 47 O O2X NDP . . . L 2 15.947 18.203 38.398 1 58.94 ? O2X NDP 301 D 1 HETATM 48 O O3X NDP . . . L 2 17.775 16.595 38.921 1 67.53 ? O3X NDP 301 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #