data_7Y9B # _model_server_result.job_id Aeqbp5KTGSYGr-G-51PCOA _model_server_result.datetime_utc '2025-08-03 22:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7y9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 7Y9B # _exptl.entry_id 7Y9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.83 _cell.angle_gamma 90 _cell.entry_id 7Y9B _cell.length_a 76.569 _cell.length_b 66.571 _cell.length_c 112.628 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7Y9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 237 n n C01 H011 N8E sing 238 n n C01 H012 N8E sing 239 n n C01 H013 N8E sing 240 n n C02 C03 N8E sing 241 n n C02 H021 N8E sing 242 n n C02 H022 N8E sing 243 n n C03 C04 N8E sing 244 n n C03 H031 N8E sing 245 n n C03 H032 N8E sing 246 n n C04 C05 N8E sing 247 n n C04 H041 N8E sing 248 n n C04 H042 N8E sing 249 n n C05 C06 N8E sing 250 n n C05 H051 N8E sing 251 n n C05 H052 N8E sing 252 n n C06 C07 N8E sing 253 n n C06 H061 N8E sing 254 n n C06 H062 N8E sing 255 n n C07 C08 N8E sing 256 n n C07 H071 N8E sing 257 n n C07 H072 N8E sing 258 n n C08 O09 N8E sing 259 n n C08 H081 N8E sing 260 n n C08 H082 N8E sing 261 n n O09 C10 N8E sing 262 n n C10 C11 N8E sing 263 n n C10 H101 N8E sing 264 n n C10 H102 N8E sing 265 n n C11 O12 N8E sing 266 n n C11 H111 N8E sing 267 n n C11 H112 N8E sing 268 n n O12 C13 N8E sing 269 n n C13 C14 N8E sing 270 n n C13 H131 N8E sing 271 n n C13 H132 N8E sing 272 n n C14 O15 N8E sing 273 n n C14 H141 N8E sing 274 n n C14 H142 N8E sing 275 n n O15 C16 N8E sing 276 n n C16 C17 N8E sing 277 n n C16 H161 N8E sing 278 n n C16 H162 N8E sing 279 n n C17 O18 N8E sing 280 n n C17 H171 N8E sing 281 n n C17 H172 N8E sing 282 n n O18 C19 N8E sing 283 n n C19 C20 N8E sing 284 n n C19 H191 N8E sing 285 n n C19 H192 N8E sing 286 n n C20 O21 N8E sing 287 n n C20 H201 N8E sing 288 n n C20 H202 N8E sing 289 n n O21 C22 N8E sing 290 n n C22 C23 N8E sing 291 n n C22 H221 N8E sing 292 n n C22 H222 N8E sing 293 n n C23 O24 N8E sing 294 n n C23 H231 N8E sing 295 n n C23 H232 N8E sing 296 n n O24 H24 N8E sing 297 n n # _atom_sites.entry_id 7Y9B _atom_sites.fract_transf_matrix[1][1] 0.01306 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00471 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 N8E A 1 301 302 N8E CXE . F 2 N8E A 1 302 301 N8E CXE . G 2 N8E C 1 301 301 N8E CXE . H 2 N8E C 1 302 302 N8E CXE . I 3 HOH B 1 301 3 HOH HOH . I 3 HOH B 2 302 1 HOH HOH . J 3 HOH D 1 301 4 HOH HOH . J 3 HOH D 2 302 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . . . H 2 40.702 18.075 44.431 1 53.03 ? C01 N8E 302 C 1 HETATM 2 C C02 N8E . . . H 2 40.256 18.655 45.772 1 52.73 ? C02 N8E 302 C 1 HETATM 3 C C03 N8E . . . H 2 39.74 17.532 46.669 1 49.41 ? C03 N8E 302 C 1 HETATM 4 C C04 N8E . . . H 2 40.397 17.619 48.046 1 43.67 ? C04 N8E 302 C 1 HETATM 5 C C05 N8E . . . H 2 39.482 18.357 49.023 1 36.61 ? C05 N8E 302 C 1 HETATM 6 C C06 N8E . . . H 2 40.058 18.269 50.437 1 36.33 ? C06 N8E 302 C 1 HETATM 7 C C07 N8E . . . H 2 40.446 16.825 50.75 1 39.33 ? C07 N8E 302 C 1 HETATM 8 C C08 N8E . . . H 2 41.23 16.77 52.059 1 47.13 ? C08 N8E 302 C 1 HETATM 9 O O09 N8E . . . H 2 40.595 17.545 53.035 1 53.33 ? O09 N8E 302 C 1 HETATM 10 C C10 N8E . . . H 2 40.668 17.005 54.324 1 58.01 ? C10 N8E 302 C 1 HETATM 11 C C11 N8E . . . H 2 40.285 18.069 55.351 1 60.25 ? C11 N8E 302 C 1 HETATM 12 O O12 N8E . . . H 2 40.803 17.725 56.604 1 58.85 ? O12 N8E 302 C 1 HETATM 13 C C13 N8E . . . H 2 41.475 18.77 57.247 1 56.91 ? C13 N8E 302 C 1 HETATM 14 C C14 N8E . . . H 2 40.78 19.085 58.57 1 51.24 ? C14 N8E 302 C 1 HETATM 15 O O15 N8E . . . H 2 41.385 18.37 59.61 1 50.68 ? O15 N8E 302 C 1 HETATM 16 C C16 N8E . . . H 2 41.313 19.018 60.849 1 53.82 ? C16 N8E 302 C 1 HETATM 17 C C17 N8E . . . H 2 41.588 18.029 61.982 1 51.83 ? C17 N8E 302 C 1 HETATM 18 O O18 N8E . . . H 2 41.121 18.577 63.183 1 52.56 ? O18 N8E 302 C 1 HETATM 19 C C19 N8E . . . H 2 41.252 17.746 64.302 1 53.42 ? C19 N8E 302 C 1 HETATM 20 C C20 N8E . . . H 2 40.649 18.452 65.516 1 55.64 ? C20 N8E 302 C 1 HETATM 21 O O21 N8E . . . H 2 40.685 17.609 66.633 1 57.42 ? O21 N8E 302 C 1 HETATM 22 C C22 N8E . . . H 2 40.261 18.226 67.817 1 56.08 ? C22 N8E 302 C 1 HETATM 23 C C23 N8E . . . H 2 40.356 17.238 68.978 1 55.89 ? C23 N8E 302 C 1 HETATM 24 O O24 N8E . . . H 2 41.474 17.541 69.765 1 55.43 ? O24 N8E 302 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #