data_7YA3
#
_model_server_result.job_id            V75-tF1-_vD9mkPnpDx0fw 
_model_server_result.datetime_utc      '2024-10-10 10:28:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ya3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":401}' 
#
_entry.id    7YA3 
#
_exptl.entry_id    7YA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YA3 
_cell.length_a            64.343 
_cell.length_b            64.343 
_cell.length_c            180.621 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 239 n n 
PA O2A NAP sing 240 n n 
PA O5B NAP sing 241 n n 
PA O3 NAP sing 242 n n 
O2A HOA2 NAP sing 243 n n 
O5B C5B NAP sing 244 n n 
C5B C4B NAP sing 245 n n 
C5B H51A NAP sing 246 n n 
C5B H52A NAP sing 247 n n 
C4B O4B NAP sing 248 n n 
C4B C3B NAP sing 249 n n 
C4B H4B NAP sing 250 n n 
O4B C1B NAP sing 251 n n 
C3B O3B NAP sing 252 n n 
C3B C2B NAP sing 253 n n 
C3B H3B NAP sing 254 n n 
O3B HO3A NAP sing 255 n n 
C2B O2B NAP sing 256 n n 
C2B C1B NAP sing 257 n n 
C2B H2B NAP sing 258 n n 
O2B P2B NAP sing 259 n n 
C1B N9A NAP sing 260 n n 
C1B H1B NAP sing 261 n n 
N9A C8A NAP sing 262 n y 
N9A C4A NAP sing 263 n y 
C8A N7A NAP doub 264 n y 
C8A H8A NAP sing 265 n n 
N7A C5A NAP sing 266 n y 
C5A C6A NAP sing 267 n y 
C5A C4A NAP doub 268 n y 
C6A N6A NAP sing 269 n n 
C6A N1A NAP doub 270 n y 
N6A H61A NAP sing 271 n n 
N6A H62A NAP sing 272 n n 
N1A C2A NAP sing 273 n y 
C2A N3A NAP doub 274 n y 
C2A H2A NAP sing 275 n n 
N3A C4A NAP sing 276 n y 
O3 PN NAP sing 277 n n 
PN O1N NAP doub 278 n n 
PN O2N NAP sing 279 n n 
PN O5D NAP sing 280 n n 
O5D C5D NAP sing 281 n n 
C5D C4D NAP sing 282 n n 
C5D H51N NAP sing 283 n n 
C5D H52N NAP sing 284 n n 
C4D O4D NAP sing 285 n n 
C4D C3D NAP sing 286 n n 
C4D H4D NAP sing 287 n n 
O4D C1D NAP sing 288 n n 
C3D O3D NAP sing 289 n n 
C3D C2D NAP sing 290 n n 
C3D H3D NAP sing 291 n n 
O3D HO3N NAP sing 292 n n 
C2D O2D NAP sing 293 n n 
C2D C1D NAP sing 294 n n 
C2D H2D NAP sing 295 n n 
O2D HO2N NAP sing 296 n n 
C1D N1N NAP sing 297 n n 
C1D H1D NAP sing 298 n n 
N1N C2N NAP sing 299 n y 
N1N C6N NAP doub 300 n y 
C2N C3N NAP doub 301 n y 
C2N H2N NAP sing 302 n n 
C3N C7N NAP sing 303 n n 
C3N C4N NAP sing 304 n y 
C7N O7N NAP doub 305 n n 
C7N N7N NAP sing 306 n n 
N7N H71N NAP sing 307 n n 
N7N H72N NAP sing 308 n n 
C4N C5N NAP doub 309 n y 
C4N H4N NAP sing 310 n n 
C5N C6N NAP sing 311 n y 
C5N H5N NAP sing 312 n n 
C6N H6N NAP sing 313 n n 
P2B O1X NAP doub 314 n n 
P2B O2X NAP sing 315 n n 
P2B O3X NAP sing 316 n n 
O2X HOP2 NAP sing 317 n n 
O3X HOP3 NAP sing 318 n n 
#
_atom_sites.entry_id                     7YA3 
_atom_sites.fract_transf_matrix[1][1]    0.015542 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 401 401 NAP NAP . 
D 3 AZI A 1 402 402 AZI AZI . 
E 2 NAP B 1 401 401 NAP NAP . 
F 3 AZI B 1 402 402 AZI AZI . 
G 4 HOH A 1 501 2 HOH HOH . 
H 4 HOH B 1 501 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -26.243 -32.228 10.825 1 52.22 ? PA NAP 401 B 1 
HETATM 2 O O1A NAP . . . E 2 -26.227 -32.849 9.462 1 44.38 ? O1A NAP 401 B 1 
HETATM 3 O O2A NAP . . . E 2 -27.263 -32.583 11.87 1 55.65 ? O2A NAP 401 B 1 
HETATM 4 O O5B NAP . . . E 2 -24.805 -32.39 11.493 1 66.13 ? O5B NAP 401 B 1 
HETATM 5 C C5B NAP . . . E 2 -24.252 -33.699 11.729 1 65.5 ? C5B NAP 401 B 1 
HETATM 6 C C4B NAP . . . E 2 -22.912 -33.75 11.053 1 62.56 ? C4B NAP 401 B 1 
HETATM 7 O O4B NAP . . . E 2 -21.88 -33.857 12.061 1 60.13 ? O4B NAP 401 B 1 
HETATM 8 C C3B NAP . . . E 2 -22.723 -34.923 10.091 1 67.67 ? C3B NAP 401 B 1 
HETATM 9 O O3B NAP . . . E 2 -21.943 -34.544 8.964 1 84.55 ? O3B NAP 401 B 1 
HETATM 10 C C2B NAP . . . E 2 -21.958 -35.916 10.941 1 65.7 ? C2B NAP 401 B 1 
HETATM 11 O O2B NAP . . . E 2 -21.189 -36.608 9.976 1 69.3 ? O2B NAP 401 B 1 
HETATM 12 C C1B NAP . . . E 2 -21.11 -34.999 11.809 1 65.28 ? C1B NAP 401 B 1 
HETATM 13 N N9A NAP . . . E 2 -20.733 -35.613 13.073 1 73.21 ? N9A NAP 401 B 1 
HETATM 14 C C8A NAP . . . E 2 -21.569 -36.2 13.991 1 69.81 ? C8A NAP 401 B 1 
HETATM 15 N N7A NAP . . . E 2 -20.931 -36.723 15.007 1 67.84 ? N7A NAP 401 B 1 
HETATM 16 C C5A NAP . . . E 2 -19.59 -36.488 14.727 1 74.78 ? C5A NAP 401 B 1 
HETATM 17 C C6A NAP . . . E 2 -18.41 -36.796 15.422 1 74.91 ? C6A NAP 401 B 1 
HETATM 18 N N6A NAP . . . E 2 -18.406 -37.433 16.585 1 79.78 ? N6A NAP 401 B 1 
HETATM 19 N N1A NAP . . . E 2 -17.229 -36.417 14.872 1 72.59 ? N1A NAP 401 B 1 
HETATM 20 C C2A NAP . . . E 2 -17.247 -35.768 13.705 1 68.32 ? C2A NAP 401 B 1 
HETATM 21 N N3A NAP . . . E 2 -18.292 -35.42 12.964 1 71.78 ? N3A NAP 401 B 1 
HETATM 22 C C4A NAP . . . E 2 -19.45 -35.803 13.537 1 77.19 ? C4A NAP 401 B 1 
HETATM 23 O O3 NAP . . . E 2 -26.165 -30.641 10.693 1 56.85 ? O3 NAP 401 B 1 
HETATM 24 P PN NAP . . . E 2 -26.54 -29.684 11.92 1 66.55 ? PN NAP 401 B 1 
HETATM 25 O O1N NAP . . . E 2 -28.012 -29.895 12.108 1 83.87 ? O1N NAP 401 B 1 
HETATM 26 O O2N NAP . . . E 2 -25.951 -28.338 11.616 1 51.09 ? O2N NAP 401 B 1 
HETATM 27 O O5D NAP . . . E 2 -25.807 -30.31 13.206 1 61.74 ? O5D NAP 401 B 1 
HETATM 28 C C5D NAP . . . E 2 -24.62 -29.627 13.715 1 66.14 ? C5D NAP 401 B 1 
HETATM 29 C C4D NAP . . . E 2 -24.792 -29.15 15.145 1 58.54 ? C4D NAP 401 B 1 
HETATM 30 O O4D NAP . . . E 2 -24.611 -27.719 15.224 1 48.04 ? O4D NAP 401 B 1 
HETATM 31 C C3D NAP . . . E 2 -26.144 -29.342 15.846 1 58.6 ? C3D NAP 401 B 1 
HETATM 32 O O3D NAP . . . E 2 -26.458 -30.692 16.189 1 59.69 ? O3D NAP 401 B 1 
HETATM 33 C C2D NAP . . . E 2 -25.906 -28.456 17.082 1 57.2 ? C2D NAP 401 B 1 
HETATM 34 O O2D NAP . . . E 2 -25.163 -29.084 18.116 1 63.4 ? O2D NAP 401 B 1 
HETATM 35 C C1D NAP . . . E 2 -25.084 -27.295 16.492 1 51.75 ? C1D NAP 401 B 1 
HETATM 36 N N1N NAP . . . E 2 -25.907 -26.092 16.283 1 50.17 ? N1N NAP 401 B 1 
HETATM 37 C C2N NAP . . . E 2 -25.568 -24.892 16.868 1 46.9 ? C2N NAP 401 B 1 
HETATM 38 C C3N NAP . . . E 2 -26.384 -23.783 16.673 1 44.89 ? C3N NAP 401 B 1 
HETATM 39 C C7N NAP . . . E 2 -26.043 -22.438 17.249 1 44.94 ? C7N NAP 401 B 1 
HETATM 40 O O7N NAP . . . E 2 -24.858 -22.065 17.285 1 40.87 ? O7N NAP 401 B 1 
HETATM 41 N N7N NAP . . . E 2 -27.037 -21.645 17.646 1 42.42 ? N7N NAP 401 B 1 
HETATM 42 C C4N NAP . . . E 2 -27.545 -23.909 15.928 1 48.82 ? C4N NAP 401 B 1 
HETATM 43 C C5N NAP . . . E 2 -27.892 -25.126 15.385 1 50.82 ? C5N NAP 401 B 1 
HETATM 44 C C6N NAP . . . E 2 -27.067 -26.205 15.556 1 52.66 ? C6N NAP 401 B 1 
HETATM 45 P P2B NAP . . . E 2 -20.615 -38.019 10.429 1 68.22 ? P2B NAP 401 B 1 
HETATM 46 O O1X NAP . . . E 2 -19.914 -37.842 11.759 1 70.36 ? O1X NAP 401 B 1 
HETATM 47 O O2X NAP . . . E 2 -19.624 -38.261 9.279 1 71.26 ? O2X NAP 401 B 1 
HETATM 48 O O3X NAP . . . E 2 -21.765 -39.041 10.497 1 63.3 ? O3X NAP 401 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#