data_7YAS # _model_server_result.job_id U1aXbLKhMnJGtafqbTK5SQ _model_server_result.datetime_utc '2024-11-14 17:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 7YAS # _exptl.entry_id 7YAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YAS _cell.length_a 47.529 _cell.length_b 106.434 _cell.length_c 128.381 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 106.434 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 47.529 0 64.1905 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 7YAS _atom_sites.fract_transf_matrix[1][1] 0.02104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 400 400 SO4 SO4 . C 2 SO4 A 1 401 401 SO4 SO4 . D 2 SO4 A 1 402 402 SO4 SO4 . E 3 EPE A 1 350 350 EPE EPE . F 4 GOL A 1 300 300 GOL GOL . G 5 HOH A 1 490 490 HOH HOH . G 5 HOH A 2 491 491 HOH HOH . G 5 HOH A 3 492 492 HOH HOH . G 5 HOH A 4 500 500 HOH HOH . G 5 HOH A 5 501 501 HOH HOH . G 5 HOH A 6 502 502 HOH HOH . G 5 HOH A 7 503 503 HOH HOH . G 5 HOH A 8 504 504 HOH HOH . G 5 HOH A 9 505 505 HOH HOH . G 5 HOH A 10 506 506 HOH HOH . G 5 HOH A 11 507 507 HOH HOH . G 5 HOH A 12 508 508 HOH HOH . G 5 HOH A 13 509 509 HOH HOH . G 5 HOH A 14 510 510 HOH HOH . G 5 HOH A 15 511 511 HOH HOH . G 5 HOH A 16 512 512 HOH HOH . G 5 HOH A 17 513 513 HOH HOH . G 5 HOH A 18 514 514 HOH HOH . G 5 HOH A 19 515 515 HOH HOH . G 5 HOH A 20 516 516 HOH HOH . G 5 HOH A 21 517 517 HOH HOH . G 5 HOH A 22 518 518 HOH HOH . G 5 HOH A 23 519 519 HOH HOH . G 5 HOH A 24 520 520 HOH HOH . G 5 HOH A 25 521 521 HOH HOH . G 5 HOH A 26 522 522 HOH HOH . G 5 HOH A 27 523 523 HOH HOH . G 5 HOH A 28 524 524 HOH HOH . G 5 HOH A 29 525 525 HOH HOH . G 5 HOH A 30 526 526 HOH HOH . G 5 HOH A 31 527 527 HOH HOH . G 5 HOH A 32 528 528 HOH HOH . G 5 HOH A 33 529 529 HOH HOH . G 5 HOH A 34 530 530 HOH HOH . G 5 HOH A 35 531 531 HOH HOH . G 5 HOH A 36 532 532 HOH HOH . G 5 HOH A 37 533 533 HOH HOH . G 5 HOH A 38 534 534 HOH HOH . G 5 HOH A 39 535 535 HOH HOH . G 5 HOH A 40 536 536 HOH HOH . G 5 HOH A 41 537 537 HOH HOH . G 5 HOH A 42 538 538 HOH HOH . G 5 HOH A 43 539 539 HOH HOH . G 5 HOH A 44 540 540 HOH HOH . G 5 HOH A 45 541 541 HOH HOH . G 5 HOH A 46 542 542 HOH HOH . G 5 HOH A 47 543 543 HOH HOH . G 5 HOH A 48 544 544 HOH HOH . G 5 HOH A 49 545 545 HOH HOH . G 5 HOH A 50 546 546 HOH HOH . G 5 HOH A 51 547 547 HOH HOH . G 5 HOH A 52 548 548 HOH HOH . G 5 HOH A 53 549 549 HOH HOH . G 5 HOH A 54 550 550 HOH HOH . G 5 HOH A 55 551 551 HOH HOH . G 5 HOH A 56 552 552 HOH HOH . G 5 HOH A 57 553 553 HOH HOH . G 5 HOH A 58 554 554 HOH HOH . G 5 HOH A 59 555 555 HOH HOH . G 5 HOH A 60 556 556 HOH HOH . G 5 HOH A 61 557 557 HOH HOH . G 5 HOH A 62 558 558 HOH HOH . G 5 HOH A 63 559 559 HOH HOH . G 5 HOH A 64 560 560 HOH HOH . G 5 HOH A 65 561 561 HOH HOH . G 5 HOH A 66 562 562 HOH HOH . G 5 HOH A 67 563 563 HOH HOH . G 5 HOH A 68 564 564 HOH HOH . G 5 HOH A 69 565 565 HOH HOH . G 5 HOH A 70 566 566 HOH HOH . G 5 HOH A 71 567 567 HOH HOH . G 5 HOH A 72 568 568 HOH HOH . G 5 HOH A 73 569 569 HOH HOH . G 5 HOH A 74 570 570 HOH HOH . G 5 HOH A 75 571 571 HOH HOH . G 5 HOH A 76 572 572 HOH HOH . G 5 HOH A 77 573 573 HOH HOH . G 5 HOH A 78 574 574 HOH HOH . G 5 HOH A 79 575 575 HOH HOH . G 5 HOH A 80 576 576 HOH HOH . G 5 HOH A 81 577 577 HOH HOH . G 5 HOH A 82 578 578 HOH HOH . G 5 HOH A 83 579 579 HOH HOH . G 5 HOH A 84 580 580 HOH HOH . G 5 HOH A 85 581 581 HOH HOH . G 5 HOH A 86 582 582 HOH HOH . G 5 HOH A 87 583 583 HOH HOH . G 5 HOH A 88 584 584 HOH HOH . G 5 HOH A 89 585 585 HOH HOH . G 5 HOH A 90 586 586 HOH HOH . G 5 HOH A 91 587 587 HOH HOH . G 5 HOH A 92 588 588 HOH HOH . G 5 HOH A 93 589 589 HOH HOH . G 5 HOH A 94 590 590 HOH HOH . G 5 HOH A 95 591 591 HOH HOH . G 5 HOH A 96 592 592 HOH HOH . G 5 HOH A 97 593 593 HOH HOH . G 5 HOH A 98 594 594 HOH HOH . G 5 HOH A 99 595 595 HOH HOH . G 5 HOH A 100 596 596 HOH HOH . G 5 HOH A 101 597 597 HOH HOH . G 5 HOH A 102 598 598 HOH HOH . G 5 HOH A 103 599 599 HOH HOH . G 5 HOH A 104 600 600 HOH HOH . G 5 HOH A 105 601 601 HOH HOH . G 5 HOH A 106 602 602 HOH HOH . G 5 HOH A 107 603 603 HOH HOH . G 5 HOH A 108 604 604 HOH HOH . G 5 HOH A 109 605 605 HOH HOH . G 5 HOH A 110 606 606 HOH HOH . G 5 HOH A 111 607 607 HOH HOH . G 5 HOH A 112 608 608 HOH HOH . G 5 HOH A 113 609 609 HOH HOH . G 5 HOH A 114 610 610 HOH HOH . G 5 HOH A 115 611 611 HOH HOH . G 5 HOH A 116 612 612 HOH HOH . G 5 HOH A 117 613 613 HOH HOH . G 5 HOH A 118 614 614 HOH HOH . G 5 HOH A 119 615 615 HOH HOH . G 5 HOH A 120 616 616 HOH HOH . G 5 HOH A 121 617 617 HOH HOH . G 5 HOH A 122 618 618 HOH HOH . G 5 HOH A 123 619 619 HOH HOH . G 5 HOH A 124 620 620 HOH HOH . G 5 HOH A 125 621 621 HOH HOH . G 5 HOH A 126 622 622 HOH HOH . G 5 HOH A 127 623 623 HOH HOH . G 5 HOH A 128 624 624 HOH HOH . G 5 HOH A 129 625 625 HOH HOH . G 5 HOH A 130 626 626 HOH HOH . G 5 HOH A 131 627 627 HOH HOH . G 5 HOH A 132 628 628 HOH HOH . G 5 HOH A 133 629 629 HOH HOH . G 5 HOH A 134 630 630 HOH HOH . G 5 HOH A 135 631 631 HOH HOH . G 5 HOH A 136 632 632 HOH HOH . G 5 HOH A 137 633 633 HOH HOH . G 5 HOH A 138 634 634 HOH HOH . G 5 HOH A 139 635 635 HOH HOH . G 5 HOH A 140 636 636 HOH HOH . G 5 HOH A 141 637 637 HOH HOH . G 5 HOH A 142 638 638 HOH HOH . G 5 HOH A 143 639 639 HOH HOH . G 5 HOH A 144 640 640 HOH HOH . G 5 HOH A 145 641 641 HOH HOH . G 5 HOH A 146 642 642 HOH HOH . G 5 HOH A 147 643 643 HOH HOH . G 5 HOH A 148 644 644 HOH HOH . G 5 HOH A 149 645 645 HOH HOH . G 5 HOH A 150 646 646 HOH HOH . G 5 HOH A 151 647 647 HOH HOH . G 5 HOH A 152 648 648 HOH HOH . G 5 HOH A 153 649 649 HOH HOH . G 5 HOH A 154 650 650 HOH HOH . G 5 HOH A 155 651 651 HOH HOH . G 5 HOH A 156 652 652 HOH HOH . G 5 HOH A 157 653 653 HOH HOH . G 5 HOH A 158 654 654 HOH HOH . G 5 HOH A 159 655 655 HOH HOH . G 5 HOH A 160 656 656 HOH HOH . G 5 HOH A 161 657 657 HOH HOH . G 5 HOH A 162 658 658 HOH HOH . G 5 HOH A 163 659 659 HOH HOH . G 5 HOH A 164 660 660 HOH HOH . G 5 HOH A 165 661 661 HOH HOH . G 5 HOH A 166 662 662 HOH HOH . G 5 HOH A 167 663 663 HOH HOH . G 5 HOH A 168 664 664 HOH HOH . G 5 HOH A 169 665 665 HOH HOH . G 5 HOH A 170 666 666 HOH HOH . G 5 HOH A 171 667 667 HOH HOH . G 5 HOH A 172 668 668 HOH HOH . G 5 HOH A 173 669 669 HOH HOH . G 5 HOH A 174 670 670 HOH HOH . G 5 HOH A 175 671 671 HOH HOH . G 5 HOH A 176 672 672 HOH HOH . G 5 HOH A 177 673 673 HOH HOH . G 5 HOH A 178 674 674 HOH HOH . G 5 HOH A 179 675 675 HOH HOH . G 5 HOH A 180 676 676 HOH HOH . G 5 HOH A 181 677 677 HOH HOH . G 5 HOH A 182 678 678 HOH HOH . G 5 HOH A 183 679 679 HOH HOH . G 5 HOH A 184 680 680 HOH HOH . G 5 HOH A 185 681 681 HOH HOH . G 5 HOH A 186 682 682 HOH HOH . G 5 HOH A 187 683 683 HOH HOH . G 5 HOH A 188 684 684 HOH HOH . G 5 HOH A 189 685 685 HOH HOH . G 5 HOH A 190 686 686 HOH HOH . G 5 HOH A 191 687 687 HOH HOH . G 5 HOH A 192 688 688 HOH HOH . G 5 HOH A 193 689 689 HOH HOH . G 5 HOH A 194 690 690 HOH HOH . G 5 HOH A 195 691 691 HOH HOH . G 5 HOH A 196 692 692 HOH HOH . G 5 HOH A 197 693 693 HOH HOH . G 5 HOH A 198 694 694 HOH HOH . G 5 HOH A 199 695 695 HOH HOH . G 5 HOH A 200 696 696 HOH HOH . G 5 HOH A 201 697 697 HOH HOH . G 5 HOH A 202 698 698 HOH HOH . G 5 HOH A 203 699 699 HOH HOH . G 5 HOH A 204 700 700 HOH HOH . G 5 HOH A 205 701 701 HOH HOH . G 5 HOH A 206 702 702 HOH HOH . G 5 HOH A 207 703 703 HOH HOH . G 5 HOH A 208 704 704 HOH HOH . G 5 HOH A 209 706 706 HOH HOH . G 5 HOH A 210 707 707 HOH HOH . G 5 HOH A 211 708 708 HOH HOH . G 5 HOH A 212 709 709 HOH HOH . G 5 HOH A 213 710 710 HOH HOH . G 5 HOH A 214 711 711 HOH HOH . G 5 HOH A 215 712 712 HOH HOH . G 5 HOH A 216 713 713 HOH HOH . G 5 HOH A 217 714 714 HOH HOH . G 5 HOH A 218 715 715 HOH HOH . G 5 HOH A 219 716 716 HOH HOH . G 5 HOH A 220 717 717 HOH HOH . G 5 HOH A 221 718 718 HOH HOH . G 5 HOH A 222 719 719 HOH HOH . G 5 HOH A 223 720 720 HOH HOH . G 5 HOH A 224 721 721 HOH HOH . G 5 HOH A 225 722 722 HOH HOH . G 5 HOH A 226 723 723 HOH HOH . G 5 HOH A 227 724 724 HOH HOH . G 5 HOH A 228 725 725 HOH HOH . G 5 HOH A 229 726 726 HOH HOH . G 5 HOH A 230 727 727 HOH HOH . G 5 HOH A 231 728 728 HOH HOH . G 5 HOH A 232 729 729 HOH HOH . G 5 HOH A 233 730 730 HOH HOH . G 5 HOH A 234 731 731 HOH HOH . G 5 HOH A 235 732 732 HOH HOH . G 5 HOH A 236 733 733 HOH HOH . G 5 HOH A 237 734 734 HOH HOH . G 5 HOH A 238 735 735 HOH HOH . G 5 HOH A 239 736 736 HOH HOH . G 5 HOH A 240 737 737 HOH HOH . G 5 HOH A 241 738 738 HOH HOH . G 5 HOH A 242 739 739 HOH HOH . G 5 HOH A 243 740 740 HOH HOH . G 5 HOH A 244 741 741 HOH HOH . G 5 HOH A 245 742 742 HOH HOH . G 5 HOH A 246 743 743 HOH HOH . G 5 HOH A 247 744 744 HOH HOH . G 5 HOH A 248 745 745 HOH HOH . G 5 HOH A 249 746 746 HOH HOH . G 5 HOH A 250 747 747 HOH HOH . G 5 HOH A 251 748 748 HOH HOH . G 5 HOH A 252 749 749 HOH HOH . G 5 HOH A 253 750 750 HOH HOH . G 5 HOH A 254 751 751 HOH HOH . G 5 HOH A 255 752 752 HOH HOH . G 5 HOH A 256 753 753 HOH HOH . G 5 HOH A 257 754 754 HOH HOH . G 5 HOH A 258 755 755 HOH HOH . G 5 HOH A 259 756 756 HOH HOH . G 5 HOH A 260 757 757 HOH HOH . G 5 HOH A 261 758 758 HOH HOH . G 5 HOH A 262 759 759 HOH HOH . G 5 HOH A 263 760 760 HOH HOH . G 5 HOH A 264 761 761 HOH HOH . G 5 HOH A 265 762 762 HOH HOH . G 5 HOH A 266 763 763 HOH HOH . G 5 HOH A 267 764 764 HOH HOH . G 5 HOH A 268 765 765 HOH HOH . G 5 HOH A 269 766 766 HOH HOH . G 5 HOH A 270 767 767 HOH HOH . G 5 HOH A 271 768 768 HOH HOH . G 5 HOH A 272 769 769 HOH HOH . G 5 HOH A 273 770 770 HOH HOH . G 5 HOH A 274 771 771 HOH HOH . G 5 HOH A 275 772 772 HOH HOH . G 5 HOH A 276 773 773 HOH HOH . G 5 HOH A 277 774 774 HOH HOH . G 5 HOH A 278 775 775 HOH HOH . G 5 HOH A 279 776 776 HOH HOH . G 5 HOH A 280 777 777 HOH HOH . G 5 HOH A 281 778 778 HOH HOH . G 5 HOH A 282 779 779 HOH HOH . G 5 HOH A 283 780 780 HOH HOH . G 5 HOH A 284 781 781 HOH HOH . G 5 HOH A 285 782 782 HOH HOH . G 5 HOH A 286 783 783 HOH HOH . G 5 HOH A 287 784 784 HOH HOH . G 5 HOH A 288 785 785 HOH HOH . G 5 HOH A 289 786 786 HOH HOH . G 5 HOH A 290 787 787 HOH HOH . G 5 HOH A 291 788 788 HOH HOH . G 5 HOH A 292 789 789 HOH HOH . G 5 HOH A 293 790 790 HOH HOH . G 5 HOH A 294 791 791 HOH HOH . G 5 HOH A 295 792 792 HOH HOH . G 5 HOH A 296 793 793 HOH HOH . G 5 HOH A 297 794 794 HOH HOH . G 5 HOH A 298 795 795 HOH HOH . G 5 HOH A 299 796 796 HOH HOH . G 5 HOH A 300 797 797 HOH HOH . G 5 HOH A 301 798 798 HOH HOH . G 5 HOH A 302 799 799 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . F 4 12.99 52.05 18.986 0.39 32.74 ? C1 GOL 300 A 1 HETATM 2 C C1 GOL . B . F 4 14.192 52.657 16.668 0.61 40.83 ? C1 GOL 300 A 1 HETATM 3 O O1 GOL . A . F 4 11.772 51.339 19.152 0.39 34.89 ? O1 GOL 300 A 1 HETATM 4 O O1 GOL . B . F 4 15.325 51.872 17.04 0.61 40.67 ? O1 GOL 300 A 1 HETATM 5 C C2 GOL . A . F 4 13.38 52.26 17.549 0.39 31.63 ? C2 GOL 300 A 1 HETATM 6 C C2 GOL . B . F 4 12.886 52.077 17.17 0.61 41.48 ? C2 GOL 300 A 1 HETATM 7 O O2 GOL . A . F 4 12.227 52.55 16.763 0.39 31.44 ? O2 GOL 300 A 1 HETATM 8 O O2 GOL . B . F 4 11.826 52.97 16.845 0.61 40.76 ? O2 GOL 300 A 1 HETATM 9 C C3 GOL . A . F 4 14.009 50.983 17.076 0.39 30.51 ? C3 GOL 300 A 1 HETATM 10 C C3 GOL . B . F 4 12.96 51.877 18.679 0.61 42.06 ? C3 GOL 300 A 1 HETATM 11 O O3 GOL . A . F 4 14.334 51.109 15.718 0.39 28.67 ? O3 GOL 300 A 1 HETATM 12 O O3 GOL . B . F 4 11.707 51.539 19.261 0.61 44.74 ? O3 GOL 300 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 12 #