data_7YB8
#
_model_server_result.job_id            YiFXYpflPFxPKYyE7F_VBw 
_model_server_result.datetime_utc      '2024-10-20 01:21:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1003}' 
#
_entry.id    7YB8 
#
_exptl.entry_id    7YB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YB8 
_cell.length_a            49.879 
_cell.length_b            91.063 
_cell.length_c            122.351 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 E MN MN . A MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 E MN MN . A MN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc3 E MN MN . A MN 1003 1_555 F O3 2HG . A 2HG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc4 E MN MN . A MN 1003 1_555 F O2 2HG . A 2HG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7YB8 
_atom_sites.fract_transf_matrix[1][1]    0.020049 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010981 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008173 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 1001 1001 GOL GOL . 
D 3 GOL A 1 1002 1101 GOL GOL . 
E 4 MN A 1 1003 801 MN MN . 
F 5 2HG A 1 1004 901 2HG LIG . 
G 6 HOH A 1 1101 63 HOH HOH . 
G 6 HOH A 2 1102 106 HOH HOH . 
G 6 HOH A 3 1103 58 HOH HOH . 
G 6 HOH A 4 1104 5 HOH HOH . 
G 6 HOH A 5 1105 114 HOH HOH . 
G 6 HOH A 6 1106 60 HOH HOH . 
G 6 HOH A 7 1107 67 HOH HOH . 
G 6 HOH A 8 1108 54 HOH HOH . 
G 6 HOH A 9 1109 53 HOH HOH . 
G 6 HOH A 10 1110 62 HOH HOH . 
G 6 HOH A 11 1111 3 HOH HOH . 
G 6 HOH A 12 1112 20 HOH HOH . 
G 6 HOH A 13 1113 10 HOH HOH . 
G 6 HOH A 14 1114 8 HOH HOH . 
G 6 HOH A 15 1115 80 HOH HOH . 
G 6 HOH A 16 1116 32 HOH HOH . 
G 6 HOH A 17 1117 26 HOH HOH . 
G 6 HOH A 18 1118 45 HOH HOH . 
G 6 HOH A 19 1119 31 HOH HOH . 
G 6 HOH A 20 1120 69 HOH HOH . 
G 6 HOH A 21 1121 4 HOH HOH . 
G 6 HOH A 22 1122 14 HOH HOH . 
G 6 HOH A 23 1123 74 HOH HOH . 
G 6 HOH A 24 1124 48 HOH HOH . 
G 6 HOH A 25 1125 40 HOH HOH . 
G 6 HOH A 26 1126 124 HOH HOH . 
G 6 HOH A 27 1127 13 HOH HOH . 
G 6 HOH A 28 1128 77 HOH HOH . 
G 6 HOH A 29 1129 111 HOH HOH . 
G 6 HOH A 30 1130 17 HOH HOH . 
G 6 HOH A 31 1131 34 HOH HOH . 
G 6 HOH A 32 1132 47 HOH HOH . 
G 6 HOH A 33 1133 2 HOH HOH . 
G 6 HOH A 34 1134 28 HOH HOH . 
G 6 HOH A 35 1135 57 HOH HOH . 
G 6 HOH A 36 1136 36 HOH HOH . 
G 6 HOH A 37 1137 113 HOH HOH . 
G 6 HOH A 38 1138 30 HOH HOH . 
G 6 HOH A 39 1139 16 HOH HOH . 
G 6 HOH A 40 1140 24 HOH HOH . 
G 6 HOH A 41 1141 65 HOH HOH . 
G 6 HOH A 42 1142 103 HOH HOH . 
G 6 HOH A 43 1143 18 HOH HOH . 
G 6 HOH A 44 1144 46 HOH HOH . 
G 6 HOH A 45 1145 52 HOH HOH . 
G 6 HOH A 46 1146 23 HOH HOH . 
G 6 HOH A 47 1147 64 HOH HOH . 
G 6 HOH A 48 1148 81 HOH HOH . 
G 6 HOH A 49 1149 29 HOH HOH . 
G 6 HOH A 50 1150 86 HOH HOH . 
G 6 HOH A 51 1151 42 HOH HOH . 
G 6 HOH A 52 1152 12 HOH HOH . 
G 6 HOH A 53 1153 120 HOH HOH . 
G 6 HOH A 54 1154 72 HOH HOH . 
G 6 HOH A 55 1155 79 HOH HOH . 
G 6 HOH A 56 1156 39 HOH HOH . 
G 6 HOH A 57 1157 105 HOH HOH . 
G 6 HOH A 58 1158 56 HOH HOH . 
G 6 HOH A 59 1159 6 HOH HOH . 
G 6 HOH A 60 1160 123 HOH HOH . 
G 6 HOH A 61 1161 71 HOH HOH . 
G 6 HOH A 62 1162 130 HOH HOH . 
G 6 HOH A 63 1163 41 HOH HOH . 
G 6 HOH A 64 1164 55 HOH HOH . 
G 6 HOH A 65 1165 75 HOH HOH . 
G 6 HOH A 66 1166 25 HOH HOH . 
G 6 HOH A 67 1167 99 HOH HOH . 
G 6 HOH A 68 1168 89 HOH HOH . 
G 6 HOH A 69 1169 118 HOH HOH . 
G 6 HOH A 70 1170 110 HOH HOH . 
G 6 HOH A 71 1171 19 HOH HOH . 
G 6 HOH A 72 1172 121 HOH HOH . 
G 6 HOH A 73 1173 15 HOH HOH . 
G 6 HOH A 74 1174 43 HOH HOH . 
G 6 HOH A 75 1175 78 HOH HOH . 
G 6 HOH A 76 1176 122 HOH HOH . 
G 6 HOH A 77 1177 90 HOH HOH . 
G 6 HOH A 78 1178 49 HOH HOH . 
G 6 HOH A 79 1179 68 HOH HOH . 
G 6 HOH A 80 1180 104 HOH HOH . 
G 6 HOH A 81 1181 107 HOH HOH . 
G 6 HOH A 82 1182 131 HOH HOH . 
G 6 HOH A 83 1183 11 HOH HOH . 
G 6 HOH A 84 1184 109 HOH HOH . 
G 6 HOH A 85 1185 92 HOH HOH . 
G 6 HOH A 86 1186 116 HOH HOH . 
G 6 HOH A 87 1187 91 HOH HOH . 
G 6 HOH A 88 1188 112 HOH HOH . 
G 6 HOH A 89 1189 93 HOH HOH . 
G 6 HOH A 90 1190 132 HOH HOH . 
G 6 HOH A 91 1191 87 HOH HOH . 
G 6 HOH A 92 1192 83 HOH HOH . 
G 6 HOH A 93 1193 134 HOH HOH . 
G 6 HOH A 94 1194 127 HOH HOH . 
G 6 HOH A 95 1195 128 HOH HOH . 
G 6 HOH A 96 1196 94 HOH HOH . 
G 6 HOH A 97 1197 33 HOH HOH . 
G 6 HOH A 98 1198 129 HOH HOH . 
G 6 HOH A 99 1199 82 HOH HOH . 
G 6 HOH A 100 1200 133 HOH HOH . 
G 6 HOH A 101 1201 98 HOH HOH . 
G 6 HOH A 102 1202 85 HOH HOH . 
G 6 HOH A 103 1203 44 HOH HOH . 
G 6 HOH A 104 1204 102 HOH HOH . 
G 6 HOH A 105 1205 76 HOH HOH . 
G 6 HOH A 106 1206 115 HOH HOH . 
G 6 HOH A 107 1207 108 HOH HOH . 
G 6 HOH A 108 1208 50 HOH HOH . 
G 6 HOH A 109 1209 66 HOH HOH . 
H 6 HOH B 1 201 96 HOH HOH . 
H 6 HOH B 2 202 1 HOH HOH . 
H 6 HOH B 3 203 61 HOH HOH . 
H 6 HOH B 4 204 38 HOH HOH . 
H 6 HOH B 5 205 100 HOH HOH . 
H 6 HOH B 6 206 27 HOH HOH . 
H 6 HOH B 7 207 119 HOH HOH . 
H 6 HOH B 8 208 125 HOH HOH . 
H 6 HOH B 9 209 101 HOH HOH . 
H 6 HOH B 10 210 126 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               58.276 
_atom_site.Cartn_y               17.057 
_atom_site.Cartn_z               18.868 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        66.14 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           1003 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              139 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#