data_7YBO # _model_server_result.job_id vFEvp15XtmDj2KIX0DyO1A _model_server_result.datetime_utc '2024-10-10 01:21:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ybo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 7YBO # _exptl.entry_id 7YBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 673.345 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-6-bromanyl-5-(hydroxymethyl)-1-(2-morpholin-4-ylethyl)pyrrolo[3,2-b]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.93 _cell.angle_gamma 90 _cell.entry_id 7YBO _cell.length_a 40.075 _cell.length_b 60.44 _cell.length_c 59.899 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAJ _struct_conn.ptnr2_label_comp_id IH7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IH7 _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.662 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H24 Br Cl2 N7 O4' _chem_comp.formula_weight 673.345 _chem_comp.id IH7 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-6-bromanyl-5-(hydroxymethyl)-1-(2-morpholin-4-ylethyl)pyrrolo[3,2-b]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLBM CBK IH7 sing 152 n n CBJ CBK IH7 doub 153 n y CBJ NBI IH7 sing 154 n y CBK CBE IH7 sing 155 n y NBP CBO IH7 trip 156 n n NBI CBH IH7 doub 157 n y CBF CBD IH7 sing 158 n n CBO CAR IH7 sing 159 n n CBE CBD IH7 sing 160 n n CBE CBG IH7 doub 161 n y OAU CBD IH7 sing 162 n n OAU CAQ IH7 sing 163 n n CBH CBG IH7 sing 164 n y CBG CLBL IH7 sing 165 n n CAR CAQ IH7 doub 166 n y CAR CAS IH7 sing 167 n y CAQ CAP IH7 sing 168 n y CAS NAT IH7 doub 169 n y CAP CAO IH7 doub 170 n y NAT CAO IH7 sing 171 n y CAO NAM IH7 sing 172 n n OAL CAK IH7 doub 173 n n NAM CAK IH7 sing 174 n n CAK CAI IH7 sing 175 n n CAI CAH IH7 doub 176 n y CAI CAE IH7 sing 177 n y CAH NAG IH7 sing 178 n y CAE NAF IH7 doub 179 n y CAE CAD IH7 sing 180 n y NAF CAA IH7 sing 181 n y NAG CAD IH7 sing 182 n y NAG CAN IH7 sing 183 n n CAD CAC IH7 doub 184 n y OBN CAJ IH7 doub 185 n n CAA CAJ IH7 sing 186 n n CAA CAB IH7 doub 187 n y CAW CAN IH7 sing 188 n n CAW NAX IH7 sing 189 n n CAC CAB IH7 sing 190 n y CAB BRAV IH7 sing 191 n n CBC NAX IH7 sing 192 n n CBC CBB IH7 sing 193 n n NAX CAY IH7 sing 194 n n CAY CAZ IH7 sing 195 n n CBB OBA IH7 sing 196 n n OBA CAZ IH7 sing 197 n n CBH H1 IH7 sing 198 n n CBJ H2 IH7 sing 199 n n CBD H3 IH7 sing 200 n n CBF H4 IH7 sing 201 n n CBF H5 IH7 sing 202 n n CBF H6 IH7 sing 203 n n CAP H7 IH7 sing 204 n n CAS H8 IH7 sing 205 n n NAM H9 IH7 sing 206 n n CAH H10 IH7 sing 207 n n CAJ H11 IH7 sing 208 n n CAC H14 IH7 sing 209 n n CAN H15 IH7 sing 210 n n CAN H16 IH7 sing 211 n n CAW H17 IH7 sing 212 n n CAW H18 IH7 sing 213 n n CAY H20 IH7 sing 214 n n CAY H21 IH7 sing 215 n n CAZ H22 IH7 sing 216 n n CAZ H23 IH7 sing 217 n n CBB H24 IH7 sing 218 n n CBB H25 IH7 sing 219 n n CBC H26 IH7 sing 220 n n CBC H27 IH7 sing 221 n n # _atom_sites.entry_id 7YBO _atom_sites.fract_transf_matrix[1][1] 0.024953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002151 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IH7 A 1 801 800 IH7 DRG . C 3 SO4 A 1 802 900 SO4 SO4 . D 3 SO4 A 1 803 901 SO4 SO4 . E 3 SO4 A 1 804 902 SO4 SO4 . F 3 SO4 A 1 805 903 SO4 SO4 . G 3 SO4 A 1 806 904 SO4 SO4 . H 3 SO4 A 1 807 905 SO4 SO4 . I 4 HOH A 1 901 58 HOH HOH . I 4 HOH A 2 902 41 HOH HOH . I 4 HOH A 3 903 54 HOH HOH . I 4 HOH A 4 904 44 HOH HOH . I 4 HOH A 5 905 48 HOH HOH . I 4 HOH A 6 906 20 HOH HOH . I 4 HOH A 7 907 4 HOH HOH . I 4 HOH A 8 908 32 HOH HOH . I 4 HOH A 9 909 57 HOH HOH . I 4 HOH A 10 910 17 HOH HOH . I 4 HOH A 11 911 9 HOH HOH . I 4 HOH A 12 912 56 HOH HOH . I 4 HOH A 13 913 13 HOH HOH . I 4 HOH A 14 914 18 HOH HOH . I 4 HOH A 15 915 22 HOH HOH . I 4 HOH A 16 916 6 HOH HOH . I 4 HOH A 17 917 15 HOH HOH . I 4 HOH A 18 918 50 HOH HOH . I 4 HOH A 19 919 26 HOH HOH . I 4 HOH A 20 920 40 HOH HOH . I 4 HOH A 21 921 55 HOH HOH . I 4 HOH A 22 922 8 HOH HOH . I 4 HOH A 23 923 11 HOH HOH . I 4 HOH A 24 924 1 HOH HOH . I 4 HOH A 25 925 12 HOH HOH . I 4 HOH A 26 926 7 HOH HOH . I 4 HOH A 27 927 38 HOH HOH . I 4 HOH A 28 928 29 HOH HOH . I 4 HOH A 29 929 16 HOH HOH . I 4 HOH A 30 930 3 HOH HOH . I 4 HOH A 31 931 61 HOH HOH . I 4 HOH A 32 932 5 HOH HOH . I 4 HOH A 33 933 19 HOH HOH . I 4 HOH A 34 934 25 HOH HOH . I 4 HOH A 35 935 21 HOH HOH . I 4 HOH A 36 936 46 HOH HOH . I 4 HOH A 37 937 34 HOH HOH . I 4 HOH A 38 938 23 HOH HOH . I 4 HOH A 39 939 39 HOH HOH . I 4 HOH A 40 940 52 HOH HOH . I 4 HOH A 41 941 49 HOH HOH . I 4 HOH A 42 942 10 HOH HOH . I 4 HOH A 43 943 27 HOH HOH . I 4 HOH A 44 944 28 HOH HOH . I 4 HOH A 45 945 31 HOH HOH . I 4 HOH A 46 946 37 HOH HOH . I 4 HOH A 47 947 35 HOH HOH . I 4 HOH A 48 948 36 HOH HOH . I 4 HOH A 49 949 51 HOH HOH . I 4 HOH A 50 950 30 HOH HOH . I 4 HOH A 51 951 42 HOH HOH . I 4 HOH A 52 952 47 HOH HOH . I 4 HOH A 53 953 14 HOH HOH . I 4 HOH A 54 954 43 HOH HOH . I 4 HOH A 55 955 33 HOH HOH . I 4 HOH A 56 956 2 HOH HOH . I 4 HOH A 57 957 53 HOH HOH . I 4 HOH A 58 958 59 HOH HOH . I 4 HOH A 59 959 24 HOH HOH . I 4 HOH A 60 960 45 HOH HOH . I 4 HOH A 61 961 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLBL IH7 . . . B 2 239.23 3.85 141.364 1 50.14 ? CLBL IH7 801 A 1 HETATM 2 C CBG IH7 . . . B 2 239.3 4.724 139.883 1 41.57 ? CBG IH7 801 A 1 HETATM 3 C CBH IH7 . . . B 2 238.264 5.592 139.563 1 38.4 ? CBH IH7 801 A 1 HETATM 4 N NBI IH7 . . . B 2 238.296 6.311 138.368 1 37.87 ? NBI IH7 801 A 1 HETATM 5 C CBJ IH7 . . . B 2 239.378 6.149 137.505 1 37.9 ? CBJ IH7 801 A 1 HETATM 6 C CBK IH7 . . . B 2 240.414 5.277 137.822 1 40.03 ? CBK IH7 801 A 1 HETATM 7 CL CLBM IH7 . . . B 2 241.713 5.134 136.691 1 43.86 ? CLBM IH7 801 A 1 HETATM 8 C CBE IH7 . . . B 2 240.387 4.562 139.025 1 41.58 ? CBE IH7 801 A 1 HETATM 9 C CBD IH7 . . . B 2 241.404 3.664 139.412 1 42.13 ? CBD IH7 801 A 1 HETATM 10 C CBF IH7 . . . B 2 241.246 2.36 138.621 1 43.38 ? CBF IH7 801 A 1 HETATM 11 O OAU IH7 . . . B 2 242.75 4.194 139.253 1 39.88 ? OAU IH7 801 A 1 HETATM 12 C CAQ IH7 . . . B 2 243.275 4.953 140.273 1 37.79 ? CAQ IH7 801 A 1 HETATM 13 C CAP IH7 . . . B 2 242.568 5.336 141.409 1 36.94 ? CAP IH7 801 A 1 HETATM 14 C CAR IH7 . . . B 2 244.605 5.343 140.133 1 37.44 ? CAR IH7 801 A 1 HETATM 15 C CBO IH7 . . . B 2 245.371 4.968 138.979 1 36.84 ? CBO IH7 801 A 1 HETATM 16 N NBP IH7 . . . B 2 245.995 4.676 138.064 1 38.81 ? NBP IH7 801 A 1 HETATM 17 C CAS IH7 . . . B 2 245.198 6.116 141.127 1 34.62 ? CAS IH7 801 A 1 HETATM 18 N NAT IH7 . . . B 2 244.46 6.491 142.256 1 32.57 ? NAT IH7 801 A 1 HETATM 19 C CAO IH7 . . . B 2 243.174 6.131 142.39 1 34.48 ? CAO IH7 801 A 1 HETATM 20 N NAM IH7 . . . B 2 242.546 6.5 143.513 1 36.18 ? NAM IH7 801 A 1 HETATM 21 C CAK IH7 . . . B 2 241.217 6.707 143.597 1 34.84 ? CAK IH7 801 A 1 HETATM 22 O OAL IH7 . . . B 2 240.404 6.651 142.673 1 35.45 ? OAL IH7 801 A 1 HETATM 23 C CAI IH7 . . . B 2 240.809 6.99 144.832 1 37.26 ? CAI IH7 801 A 1 HETATM 24 C CAH IH7 . . . B 2 239.542 7.136 145.202 1 37.8 ? CAH IH7 801 A 1 HETATM 25 C CAE IH7 . . . B 2 241.611 7.136 145.882 1 36.8 ? CAE IH7 801 A 1 HETATM 26 N NAF IH7 . . . B 2 242.948 7.076 146.013 1 36.21 ? NAF IH7 801 A 1 HETATM 27 C CAA IH7 . . . B 2 243.527 7.277 147.206 1 36.44 ? CAA IH7 801 A 1 HETATM 28 C CAJ IH7 . . . B 2 244.917 7.212 147.335 1 37.27 ? CAJ IH7 801 A 1 HETATM 29 O OBN IH7 . . . B 2 245.501 8.511 147.161 1 36.69 ? OBN IH7 801 A 1 HETATM 30 C CAB IH7 . . . B 2 242.72 7.544 148.306 1 40.5 ? CAB IH7 801 A 1 HETATM 31 BR BRAV IH7 . . . B 2 243.455 7.84 150.016 1 67.41 ? BRAV IH7 801 A 1 HETATM 32 C CAC IH7 . . . B 2 241.344 7.597 148.132 1 40.48 ? CAC IH7 801 A 1 HETATM 33 C CAD IH7 . . . B 2 240.823 7.393 146.928 1 38.36 ? CAD IH7 801 A 1 HETATM 34 N NAG IH7 . . . B 2 239.556 7.39 146.51 1 40.26 ? NAG IH7 801 A 1 HETATM 35 C CAN IH7 . . . B 2 238.378 7.641 147.379 1 44.76 ? CAN IH7 801 A 1 HETATM 36 C CAW IH7 . . . B 2 238.016 9.128 147.363 1 47.59 ? CAW IH7 801 A 1 HETATM 37 N NAX IH7 . . . B 2 237.3 9.54 148.58 1 54.65 ? NAX IH7 801 A 1 HETATM 38 C CAY IH7 . . . B 2 235.969 8.918 148.61 1 57.65 ? CAY IH7 801 A 1 HETATM 39 C CAZ IH7 . . . B 2 235.193 9.384 149.836 1 60.66 ? CAZ IH7 801 A 1 HETATM 40 O OBA IH7 . . . B 2 235.048 10.818 149.8 1 61.44 ? OBA IH7 801 A 1 HETATM 41 C CBB IH7 . . . B 2 236.341 11.458 149.795 1 59.41 ? CBB IH7 801 A 1 HETATM 42 C CBC IH7 . . . B 2 237.133 11.003 148.575 1 54.14 ? CBC IH7 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #