data_7YBR # _model_server_result.job_id kSmQZGlabKtlJQV9n516AQ _model_server_result.datetime_utc '2024-11-26 07:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ybr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7YBR # _exptl.entry_id 7YBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 273.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tolcapone _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YBR _cell.length_a 84.925 _cell.length_b 42.929 _cell.length_c 64.841 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -42.929 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H11 N O5' _chem_comp.formula_weight 273.241 _chem_comp.id TCW _chem_comp.mon_nstd_flag . _chem_comp.name Tolcapone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3,4-dihydroxy-5-nitrophenyl)(4-methylphenyl)methanone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 C12 TCW doub 271 n n C12 C4 TCW sing 272 n n C12 C14 TCW sing 273 n n C4 C3 TCW doub 274 n y C4 C5 TCW sing 275 n y C3 C2 TCW sing 276 n y C2 O7 TCW sing 277 n n C2 C1 TCW doub 278 n y C5 C6 TCW doub 279 n y C6 N9 TCW sing 280 n n C6 C1 TCW sing 281 n y N9 O11 TCW sing 282 n n N9 O10 TCW doub 283 n n C1 O8 TCW sing 284 n n C14 C19 TCW doub 285 n y C14 C15 TCW sing 286 n y C19 C18 TCW sing 287 n y C18 C17 TCW doub 288 n y C17 C20 TCW sing 289 n n C17 C16 TCW sing 290 n y C16 C15 TCW doub 291 n y C3 H3 TCW sing 292 n n O7 HO7 TCW sing 293 n n C5 H5 TCW sing 294 n n O8 HO8 TCW sing 295 n n C19 H19 TCW sing 296 n n C18 H18 TCW sing 297 n n C20 H20 TCW sing 298 n n C20 H20A TCW sing 299 n n C20 H20B TCW sing 300 n n C16 H16 TCW sing 301 n n C15 H15 TCW sing 302 n n # _atom_sites.entry_id 7YBR _atom_sites.fract_transf_matrix[1][1] 0.011775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TCW A 1 201 201 TCW TCW . D 2 TCW B 1 201 201 TCW TCW . E 3 HOH A 1 301 301 HOH HOH . E 3 HOH A 2 302 368 HOH HOH . E 3 HOH A 3 303 305 HOH HOH . E 3 HOH A 4 304 302 HOH HOH . E 3 HOH A 5 305 312 HOH HOH . E 3 HOH A 6 306 303 HOH HOH . E 3 HOH A 7 307 310 HOH HOH . E 3 HOH A 8 308 306 HOH HOH . E 3 HOH A 9 309 307 HOH HOH . E 3 HOH A 10 310 308 HOH HOH . E 3 HOH A 11 311 309 HOH HOH . E 3 HOH A 12 312 311 HOH HOH . E 3 HOH A 13 313 313 HOH HOH . E 3 HOH A 14 314 314 HOH HOH . E 3 HOH A 15 315 316 HOH HOH . E 3 HOH A 16 316 315 HOH HOH . E 3 HOH A 17 317 317 HOH HOH . E 3 HOH A 18 318 323 HOH HOH . E 3 HOH A 19 319 321 HOH HOH . E 3 HOH A 20 320 318 HOH HOH . E 3 HOH A 21 321 366 HOH HOH . E 3 HOH A 22 322 322 HOH HOH . E 3 HOH A 23 323 319 HOH HOH . E 3 HOH A 24 324 330 HOH HOH . E 3 HOH A 25 325 320 HOH HOH . E 3 HOH A 26 326 324 HOH HOH . E 3 HOH A 27 327 325 HOH HOH . E 3 HOH A 28 328 304 HOH HOH . E 3 HOH A 29 329 365 HOH HOH . E 3 HOH A 30 330 327 HOH HOH . E 3 HOH A 31 331 329 HOH HOH . E 3 HOH A 32 332 344 HOH HOH . E 3 HOH A 33 333 337 HOH HOH . E 3 HOH A 34 334 328 HOH HOH . E 3 HOH A 35 335 331 HOH HOH . E 3 HOH A 36 336 333 HOH HOH . E 3 HOH A 37 337 332 HOH HOH . E 3 HOH A 38 338 334 HOH HOH . E 3 HOH A 39 339 335 HOH HOH . E 3 HOH A 40 340 336 HOH HOH . E 3 HOH A 41 341 349 HOH HOH . E 3 HOH A 42 342 338 HOH HOH . E 3 HOH A 43 343 339 HOH HOH . E 3 HOH A 44 344 340 HOH HOH . E 3 HOH A 45 345 346 HOH HOH . E 3 HOH A 46 346 341 HOH HOH . E 3 HOH A 47 347 342 HOH HOH . E 3 HOH A 48 348 345 HOH HOH . E 3 HOH A 49 349 343 HOH HOH . E 3 HOH A 50 350 348 HOH HOH . E 3 HOH A 51 351 347 HOH HOH . E 3 HOH A 52 352 351 HOH HOH . E 3 HOH A 53 353 326 HOH HOH . E 3 HOH A 54 354 362 HOH HOH . E 3 HOH A 55 355 352 HOH HOH . E 3 HOH A 56 356 371 HOH HOH . E 3 HOH A 57 357 350 HOH HOH . E 3 HOH A 58 358 370 HOH HOH . E 3 HOH A 59 359 353 HOH HOH . E 3 HOH A 60 360 354 HOH HOH . E 3 HOH A 61 361 367 HOH HOH . E 3 HOH A 62 362 369 HOH HOH . E 3 HOH A 63 363 355 HOH HOH . E 3 HOH A 64 364 356 HOH HOH . E 3 HOH A 65 365 363 HOH HOH . E 3 HOH A 66 366 357 HOH HOH . E 3 HOH A 67 367 358 HOH HOH . E 3 HOH A 68 368 364 HOH HOH . E 3 HOH A 69 369 359 HOH HOH . E 3 HOH A 70 370 361 HOH HOH . E 3 HOH A 71 371 360 HOH HOH . F 3 HOH B 1 301 368 HOH HOH . F 3 HOH B 2 302 369 HOH HOH . F 3 HOH B 3 303 303 HOH HOH . F 3 HOH B 4 304 302 HOH HOH . F 3 HOH B 5 305 301 HOH HOH . F 3 HOH B 6 306 306 HOH HOH . F 3 HOH B 7 307 304 HOH HOH . F 3 HOH B 8 308 305 HOH HOH . F 3 HOH B 9 309 307 HOH HOH . F 3 HOH B 10 310 309 HOH HOH . F 3 HOH B 11 311 312 HOH HOH . F 3 HOH B 12 312 319 HOH HOH . F 3 HOH B 13 313 311 HOH HOH . F 3 HOH B 14 314 315 HOH HOH . F 3 HOH B 15 315 313 HOH HOH . F 3 HOH B 16 316 314 HOH HOH . F 3 HOH B 17 317 317 HOH HOH . F 3 HOH B 18 318 308 HOH HOH . F 3 HOH B 19 319 316 HOH HOH . F 3 HOH B 20 320 318 HOH HOH . F 3 HOH B 21 321 321 HOH HOH . F 3 HOH B 22 322 310 HOH HOH . F 3 HOH B 23 323 322 HOH HOH . F 3 HOH B 24 324 325 HOH HOH . F 3 HOH B 25 325 324 HOH HOH . F 3 HOH B 26 326 323 HOH HOH . F 3 HOH B 27 327 326 HOH HOH . F 3 HOH B 28 328 334 HOH HOH . F 3 HOH B 29 329 320 HOH HOH . F 3 HOH B 30 330 336 HOH HOH . F 3 HOH B 31 331 328 HOH HOH . F 3 HOH B 32 332 327 HOH HOH . F 3 HOH B 33 333 330 HOH HOH . F 3 HOH B 34 334 331 HOH HOH . F 3 HOH B 35 335 329 HOH HOH . F 3 HOH B 36 336 335 HOH HOH . F 3 HOH B 37 337 332 HOH HOH . F 3 HOH B 38 338 333 HOH HOH . F 3 HOH B 39 339 338 HOH HOH . F 3 HOH B 40 340 337 HOH HOH . F 3 HOH B 41 341 339 HOH HOH . F 3 HOH B 42 342 340 HOH HOH . F 3 HOH B 43 343 343 HOH HOH . F 3 HOH B 44 344 341 HOH HOH . F 3 HOH B 45 345 342 HOH HOH . F 3 HOH B 46 346 344 HOH HOH . F 3 HOH B 47 347 356 HOH HOH . F 3 HOH B 48 348 346 HOH HOH . F 3 HOH B 49 349 348 HOH HOH . F 3 HOH B 50 350 347 HOH HOH . F 3 HOH B 51 351 349 HOH HOH . F 3 HOH B 52 352 345 HOH HOH . F 3 HOH B 53 353 352 HOH HOH . F 3 HOH B 54 354 350 HOH HOH . F 3 HOH B 55 355 370 HOH HOH . F 3 HOH B 56 356 351 HOH HOH . F 3 HOH B 57 357 367 HOH HOH . F 3 HOH B 58 358 353 HOH HOH . F 3 HOH B 59 359 354 HOH HOH . F 3 HOH B 60 360 355 HOH HOH . F 3 HOH B 61 361 359 HOH HOH . F 3 HOH B 62 362 357 HOH HOH . F 3 HOH B 63 363 358 HOH HOH . F 3 HOH B 64 364 361 HOH HOH . F 3 HOH B 65 365 360 HOH HOH . F 3 HOH B 66 366 363 HOH HOH . F 3 HOH B 67 367 362 HOH HOH . F 3 HOH B 68 368 365 HOH HOH . F 3 HOH B 69 369 364 HOH HOH . F 3 HOH B 70 370 366 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 TCW . . . D 2 1.837 -19.61 -6.983 0.49 20.46 ? O13 TCW 201 B 1 HETATM 2 C C12 TCW . . . D 2 0.903 -20.347 -6.744 0.49 19.87 ? C12 TCW 201 B 1 HETATM 3 C C4 TCW . . . D 2 0.673 -20.765 -5.324 0.49 19.05 ? C4 TCW 201 B 1 HETATM 4 C C3 TCW . . . D 2 1.359 -20.091 -4.307 0.49 24.28 ? C3 TCW 201 B 1 HETATM 5 C C2 TCW . . . D 2 1.136 -20.475 -2.983 0.49 20.96 ? C2 TCW 201 B 1 HETATM 6 O O7 TCW . . . D 2 1.8 -19.83 -1.98 0.49 26.63 ? O7 TCW 201 B 1 HETATM 7 C C5 TCW . . . D 2 -0.203 -21.786 -5.019 0.49 17.34 ? C5 TCW 201 B 1 HETATM 8 C C6 TCW . . . D 2 -0.415 -22.159 -3.698 0.49 19.93 ? C6 TCW 201 B 1 HETATM 9 N N9 TCW . . . D 2 -1.374 -23.264 -3.427 0.49 21.64 ? N9 TCW 201 B 1 HETATM 10 O O11 TCW . . . D 2 -1.238 -23.929 -2.436 0.49 30.29 ? O11 TCW 201 B 1 HETATM 11 O O10 TCW . . . D 2 -2.256 -23.425 -4.229 0.49 25.26 ? O10 TCW 201 B 1 HETATM 12 C C1 TCW . . . D 2 0.244 -21.512 -2.674 0.49 22.65 ? C1 TCW 201 B 1 HETATM 13 O O8 TCW . . . D 2 0.057 -21.853 -1.373 0.49 24.05 ? O8 TCW 201 B 1 HETATM 14 C C14 TCW . . . D 2 -0.049 -20.748 -7.802 0.49 16.34 ? C14 TCW 201 B 1 HETATM 15 C C19 TCW . . . D 2 0.427 -21.329 -8.989 0.49 19.34 ? C19 TCW 201 B 1 HETATM 16 C C18 TCW . . . D 2 -0.479 -21.697 -9.998 0.49 15.2 ? C18 TCW 201 B 1 HETATM 17 C C17 TCW . . . D 2 -1.847 -21.462 -9.816 0.49 14.96 ? C17 TCW 201 B 1 HETATM 18 C C20 TCW . . . D 2 -2.87 -21.826 -10.839 0.49 10.47 ? C20 TCW 201 B 1 HETATM 19 C C16 TCW . . . D 2 -2.292 -20.878 -8.652 0.49 13.61 ? C16 TCW 201 B 1 HETATM 20 C C15 TCW . . . D 2 -1.408 -20.516 -7.668 0.49 14.92 ? C15 TCW 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #