data_7YC1 # _model_server_result.job_id ggPxAec21kfOgVjePaJPhQ _model_server_result.datetime_utc '2024-12-20 17:27:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 7YC1 # _exptl.entry_id 7YC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.82 _cell.angle_gamma 90 _cell.entry_id 7YC1 _cell.length_a 42.153 _cell.length_b 60.977 _cell.length_c 60.488 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 110 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAJ _struct_conn.ptnr2_label_comp_id IIQ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IIQ _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.644 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7YC1 _atom_sites.fract_transf_matrix[1][1] 0.023723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IIQ A 1 801 800 IIQ DRG . C 3 SO4 A 1 802 900 SO4 SO4 . D 3 SO4 A 1 803 901 SO4 SO4 . E 3 SO4 A 1 804 902 SO4 SO4 . F 4 GOL A 1 805 1000 GOL GOL . G 5 HOH A 1 901 38 HOH HOH . G 5 HOH A 2 902 40 HOH HOH . G 5 HOH A 3 903 2 HOH HOH . G 5 HOH A 4 904 45 HOH HOH . G 5 HOH A 5 905 16 HOH HOH . G 5 HOH A 6 906 39 HOH HOH . G 5 HOH A 7 907 56 HOH HOH . G 5 HOH A 8 908 67 HOH HOH . G 5 HOH A 9 909 57 HOH HOH . G 5 HOH A 10 910 46 HOH HOH . G 5 HOH A 11 911 32 HOH HOH . G 5 HOH A 12 912 63 HOH HOH . G 5 HOH A 13 913 11 HOH HOH . G 5 HOH A 14 914 61 HOH HOH . G 5 HOH A 15 915 7 HOH HOH . G 5 HOH A 16 916 65 HOH HOH . G 5 HOH A 17 917 64 HOH HOH . G 5 HOH A 18 918 5 HOH HOH . G 5 HOH A 19 919 13 HOH HOH . G 5 HOH A 20 920 23 HOH HOH . G 5 HOH A 21 921 9 HOH HOH . G 5 HOH A 22 922 51 HOH HOH . G 5 HOH A 23 923 41 HOH HOH . G 5 HOH A 24 924 70 HOH HOH . G 5 HOH A 25 925 30 HOH HOH . G 5 HOH A 26 926 21 HOH HOH . G 5 HOH A 27 927 62 HOH HOH . G 5 HOH A 28 928 37 HOH HOH . G 5 HOH A 29 929 34 HOH HOH . G 5 HOH A 30 930 10 HOH HOH . G 5 HOH A 31 931 59 HOH HOH . G 5 HOH A 32 932 66 HOH HOH . G 5 HOH A 33 933 35 HOH HOH . G 5 HOH A 34 934 48 HOH HOH . G 5 HOH A 35 935 1 HOH HOH . G 5 HOH A 36 936 22 HOH HOH . G 5 HOH A 37 937 14 HOH HOH . G 5 HOH A 38 938 15 HOH HOH . G 5 HOH A 39 939 54 HOH HOH . G 5 HOH A 40 940 8 HOH HOH . G 5 HOH A 41 941 47 HOH HOH . G 5 HOH A 42 942 6 HOH HOH . G 5 HOH A 43 943 42 HOH HOH . G 5 HOH A 44 944 55 HOH HOH . G 5 HOH A 45 945 24 HOH HOH . G 5 HOH A 46 946 33 HOH HOH . G 5 HOH A 47 947 26 HOH HOH . G 5 HOH A 48 948 50 HOH HOH . G 5 HOH A 49 949 12 HOH HOH . G 5 HOH A 50 950 78 HOH HOH . G 5 HOH A 51 951 36 HOH HOH . G 5 HOH A 52 952 18 HOH HOH . G 5 HOH A 53 953 29 HOH HOH . G 5 HOH A 54 954 28 HOH HOH . G 5 HOH A 55 955 17 HOH HOH . G 5 HOH A 56 956 77 HOH HOH . G 5 HOH A 57 957 60 HOH HOH . G 5 HOH A 58 958 19 HOH HOH . G 5 HOH A 59 959 76 HOH HOH . G 5 HOH A 60 960 20 HOH HOH . G 5 HOH A 61 961 25 HOH HOH . G 5 HOH A 62 962 31 HOH HOH . G 5 HOH A 63 963 52 HOH HOH . G 5 HOH A 64 964 4 HOH HOH . G 5 HOH A 65 965 68 HOH HOH . G 5 HOH A 66 966 49 HOH HOH . G 5 HOH A 67 967 44 HOH HOH . G 5 HOH A 68 968 27 HOH HOH . G 5 HOH A 69 969 74 HOH HOH . G 5 HOH A 70 970 3 HOH HOH . G 5 HOH A 71 971 71 HOH HOH . G 5 HOH A 72 972 53 HOH HOH . G 5 HOH A 73 973 69 HOH HOH . G 5 HOH A 74 974 43 HOH HOH . G 5 HOH A 75 975 58 HOH HOH . G 5 HOH A 76 976 72 HOH HOH . G 5 HOH A 77 977 73 HOH HOH . G 5 HOH A 78 978 79 HOH HOH . G 5 HOH A 79 979 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 225.857 10.182 142.638 1 43.29 ? C1 GOL 805 A 1 HETATM 2 O O1 GOL . . . F 4 226.217 11.539 142.763 1 42.12 ? O1 GOL 805 A 1 HETATM 3 C C2 GOL . . . F 4 226.889 9.462 141.778 1 42.27 ? C2 GOL 805 A 1 HETATM 4 O O2 GOL . . . F 4 227.358 8.324 142.466 1 45.35 ? O2 GOL 805 A 1 HETATM 5 C C3 GOL . . . F 4 226.249 9.041 140.46 1 35.59 ? C3 GOL 805 A 1 HETATM 6 O O3 GOL . . . F 4 227.066 9.449 139.385 1 33.14 ? O3 GOL 805 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 527 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #