data_7YCO
#
_model_server_result.job_id            88ZNfLNI1FzlWxJ2Bzl1NA 
_model_server_result.datetime_utc      '2025-08-01 02:23:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7YCO 
#
_exptl.entry_id    7YCO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YCO 
_cell.length_a            135.966 
_cell.length_b            135.966 
_cell.length_c            69.556 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    'I 4bw' 
_symmetry.space_group_name_H-M     'I 41' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 336 1_555 A SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf2 A SG CYS 47 A CYS 379 1_555 A SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 A SG CYS 59 A CYS 391 1_555 A SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 148 A CYS 480 1_555 A SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf5 B SG CYS 220 B CYS 220 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 222 B CYS 222 1_555 B SG CYS 265 B CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
covale ? covale1 A ND2 ASN 11 A ASN 343 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7YCO 
_atom_sites.fract_transf_matrix[1][1]    0.007355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014377 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 601 NAG NAG . 
D 4 HOH A 1 701 28 HOH HOH . 
D 4 HOH A 2 702 5 HOH HOH . 
D 4 HOH A 3 703 47 HOH HOH . 
D 4 HOH A 4 704 9 HOH HOH . 
D 4 HOH A 5 705 23 HOH HOH . 
D 4 HOH A 6 706 30 HOH HOH . 
D 4 HOH A 7 707 6 HOH HOH . 
D 4 HOH A 8 708 13 HOH HOH . 
D 4 HOH A 9 709 16 HOH HOH . 
D 4 HOH A 10 710 33 HOH HOH . 
D 4 HOH A 11 711 39 HOH HOH . 
D 4 HOH A 12 712 80 HOH HOH . 
D 4 HOH A 13 713 29 HOH HOH . 
D 4 HOH A 14 714 14 HOH HOH . 
D 4 HOH A 15 715 68 HOH HOH . 
D 4 HOH A 16 716 77 HOH HOH . 
D 4 HOH A 17 717 62 HOH HOH . 
D 4 HOH A 18 718 40 HOH HOH . 
D 4 HOH A 19 719 103 HOH HOH . 
D 4 HOH A 20 720 89 HOH HOH . 
D 4 HOH A 21 721 37 HOH HOH . 
D 4 HOH A 22 722 65 HOH HOH . 
D 4 HOH A 23 723 17 HOH HOH . 
D 4 HOH A 24 724 22 HOH HOH . 
D 4 HOH A 25 725 49 HOH HOH . 
D 4 HOH A 26 726 10 HOH HOH . 
D 4 HOH A 27 727 12 HOH HOH . 
D 4 HOH A 28 728 50 HOH HOH . 
D 4 HOH A 29 729 57 HOH HOH . 
D 4 HOH A 30 730 46 HOH HOH . 
D 4 HOH A 31 731 45 HOH HOH . 
D 4 HOH A 32 732 41 HOH HOH . 
D 4 HOH A 33 733 79 HOH HOH . 
D 4 HOH A 34 734 48 HOH HOH . 
D 4 HOH A 35 735 108 HOH HOH . 
D 4 HOH A 36 736 55 HOH HOH . 
D 4 HOH A 37 737 27 HOH HOH . 
D 4 HOH A 38 738 63 HOH HOH . 
D 4 HOH A 39 739 43 HOH HOH . 
D 4 HOH A 40 740 35 HOH HOH . 
D 4 HOH A 41 741 84 HOH HOH . 
D 4 HOH A 42 742 64 HOH HOH . 
D 4 HOH A 43 743 75 HOH HOH . 
D 4 HOH A 44 744 66 HOH HOH . 
D 4 HOH A 45 745 1 HOH HOH . 
D 4 HOH A 46 746 60 HOH HOH . 
D 4 HOH A 47 747 92 HOH HOH . 
D 4 HOH A 48 748 21 HOH HOH . 
D 4 HOH A 49 749 91 HOH HOH . 
D 4 HOH A 50 750 74 HOH HOH . 
D 4 HOH A 51 751 36 HOH HOH . 
D 4 HOH A 52 752 32 HOH HOH . 
D 4 HOH A 53 753 104 HOH HOH . 
D 4 HOH A 54 754 54 HOH HOH . 
D 4 HOH A 55 755 18 HOH HOH . 
D 4 HOH A 56 756 94 HOH HOH . 
D 4 HOH A 57 757 98 HOH HOH . 
D 4 HOH A 58 758 42 HOH HOH . 
D 4 HOH A 59 759 86 HOH HOH . 
D 4 HOH A 60 760 82 HOH HOH . 
D 4 HOH A 61 761 59 HOH HOH . 
D 4 HOH A 62 762 122 HOH HOH . 
D 4 HOH A 63 763 87 HOH HOH . 
D 4 HOH A 64 764 106 HOH HOH . 
D 4 HOH A 65 765 105 HOH HOH . 
D 4 HOH A 66 766 97 HOH HOH . 
D 4 HOH A 67 767 93 HOH HOH . 
E 4 HOH B 1 301 123 HOH HOH . 
E 4 HOH B 2 302 119 HOH HOH . 
E 4 HOH B 3 303 90 HOH HOH . 
E 4 HOH B 4 304 81 HOH HOH . 
E 4 HOH B 5 305 7 HOH HOH . 
E 4 HOH B 6 306 116 HOH HOH . 
E 4 HOH B 7 307 120 HOH HOH . 
E 4 HOH B 8 308 69 HOH HOH . 
E 4 HOH B 9 309 20 HOH HOH . 
E 4 HOH B 10 310 31 HOH HOH . 
E 4 HOH B 11 311 58 HOH HOH . 
E 4 HOH B 12 312 124 HOH HOH . 
E 4 HOH B 13 313 121 HOH HOH . 
E 4 HOH B 14 314 114 HOH HOH . 
E 4 HOH B 15 315 95 HOH HOH . 
E 4 HOH B 16 316 52 HOH HOH . 
E 4 HOH B 17 317 3 HOH HOH . 
E 4 HOH B 18 318 85 HOH HOH . 
E 4 HOH B 19 319 111 HOH HOH . 
E 4 HOH B 20 320 110 HOH HOH . 
E 4 HOH B 21 321 83 HOH HOH . 
E 4 HOH B 22 322 38 HOH HOH . 
E 4 HOH B 23 323 118 HOH HOH . 
E 4 HOH B 24 324 61 HOH HOH . 
E 4 HOH B 25 325 117 HOH HOH . 
E 4 HOH B 26 326 73 HOH HOH . 
E 4 HOH B 27 327 112 HOH HOH . 
E 4 HOH B 28 328 67 HOH HOH . 
E 4 HOH B 29 329 2 HOH HOH . 
E 4 HOH B 30 330 78 HOH HOH . 
E 4 HOH B 31 331 115 HOH HOH . 
E 4 HOH B 32 332 25 HOH HOH . 
E 4 HOH B 33 333 56 HOH HOH . 
E 4 HOH B 34 334 44 HOH HOH . 
E 4 HOH B 35 335 70 HOH HOH . 
E 4 HOH B 36 336 19 HOH HOH . 
E 4 HOH B 37 337 72 HOH HOH . 
E 4 HOH B 38 338 113 HOH HOH . 
E 4 HOH B 39 339 15 HOH HOH . 
E 4 HOH B 40 340 4 HOH HOH . 
E 4 HOH B 41 341 99 HOH HOH . 
E 4 HOH B 42 342 11 HOH HOH . 
E 4 HOH B 43 343 26 HOH HOH . 
E 4 HOH B 44 344 107 HOH HOH . 
E 4 HOH B 45 345 100 HOH HOH . 
E 4 HOH B 46 346 76 HOH HOH . 
E 4 HOH B 47 347 109 HOH HOH . 
E 4 HOH B 48 348 96 HOH HOH . 
E 4 HOH B 49 349 101 HOH HOH . 
E 4 HOH B 50 350 34 HOH HOH . 
E 4 HOH B 51 351 53 HOH HOH . 
E 4 HOH B 52 352 51 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -11.161 -48.215 -5.645 0 55.52 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 -9.727 -48.71 -5.953 0 56.07 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 -9.456 -50.053 -5.256 0 56.06 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 -9.849 -50.006 -3.786 0 55.54 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 -11.289 -49.534 -3.665 0 54.46 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 -11.777 -49.431 -2.24 0 52.23 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 -8.405 -48.51 -8.03 0 56.76 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 -7.304 -47.943 -7.184 0 56.89 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 -9.532 -48.845 -7.388 0 56.38 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 -8.079 -50.393 -5.374 0 56.44 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 -9.726 -51.299 -3.203 0 55.64 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 -11.386 -48.225 -4.236 0 54.19 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 -13.195 -49.362 -2.185 0 50.96 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 -8.285 -48.65 -9.243 0 56.99 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#