data_7YEZ
#
_model_server_result.job_id            Sax8LU9bzjbEapFCDmCN5g 
_model_server_result.datetime_utc      '2024-10-19 06:38:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1301}' 
#
_entry.id    7YEZ 
#
_exptl.entry_id    7YEZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YEZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 W N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 S SG CYS 183 b CYS 183 1_555 BA ZN ZN . b ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc2 S SG CYS 186 b CYS 186 1_555 BA ZN ZN . b ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     7YEZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 5 SAM H 1 1301 1301 SAM SAM . 
X 5 SAM I 1 1301 1301 SAM SAM . 
Y 5 SAM J 1 1301 1301 SAM SAM . 
Z 5 SAM K 1 1301 1301 SAM SAM . 
AA 5 SAM L 1 1301 1301 SAM SAM . 
BA 6 ZN b 1 2001 2001 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . X 5 250.988 314.252 127.018 1 91.73 ? N SAM 1301 I 1 
HETATM 2 C CA SAM . . . X 5 250.881 313.248 128.046 1 91.73 ? CA SAM 1301 I 1 
HETATM 3 C C SAM . . . X 5 249.929 312.147 127.755 1 91.73 ? C SAM 1301 I 1 
HETATM 4 O O SAM . . . X 5 249.645 311.311 128.628 1 91.73 ? O SAM 1301 I 1 
HETATM 5 O OXT SAM . . . X 5 249.456 312.15 126.628 1 91.73 ? OXT SAM 1301 I 1 
HETATM 6 C CB SAM . . . X 5 251.246 313.561 129.495 1 91.73 ? CB SAM 1301 I 1 
HETATM 7 C CG SAM . . . X 5 252.308 314.647 129.58 1 91.73 ? CG SAM 1301 I 1 
HETATM 8 S SD SAM . . . X 5 252.811 314.81 131.153 1 91.73 ? SD SAM 1301 I 1 
HETATM 9 C CE SAM . . . X 5 252.04 316.117 131.816 1 91.73 ? CE SAM 1301 I 1 
HETATM 10 C C5' SAM . . . X 5 254.45 315.067 131.181 1 91.73 ? C5' SAM 1301 I 1 
HETATM 11 C C4' SAM . . . X 5 255.216 313.756 131.066 1 91.73 ? C4' SAM 1301 I 1 
HETATM 12 O O4' SAM . . . X 5 256.568 314.057 130.75 1 91.73 ? O4' SAM 1301 I 1 
HETATM 13 C C3' SAM . . . X 5 255.219 312.927 132.337 1 91.73 ? C3' SAM 1301 I 1 
HETATM 14 O O3' SAM . . . X 5 254.687 311.633 132.069 1 91.73 ? O3' SAM 1301 I 1 
HETATM 15 C C2' SAM . . . X 5 256.665 312.841 132.764 1 91.73 ? C2' SAM 1301 I 1 
HETATM 16 O O2' SAM . . . X 5 257.015 311.512 133.141 1 91.73 ? O2' SAM 1301 I 1 
HETATM 17 C C1' SAM . . . X 5 257.456 313.273 131.537 1 91.73 ? C1' SAM 1301 I 1 
HETATM 18 N N9 SAM . . . X 5 258.683 314.072 131.808 1 91.73 ? N9 SAM 1301 I 1 
HETATM 19 C C8 SAM . . . X 5 258.861 315.045 132.724 1 91.73 ? C8 SAM 1301 I 1 
HETATM 20 N N7 SAM . . . X 5 260.119 315.542 132.661 1 91.73 ? N7 SAM 1301 I 1 
HETATM 21 C C5 SAM . . . X 5 260.764 314.891 131.687 1 91.73 ? C5 SAM 1301 I 1 
HETATM 22 C C6 SAM . . . X 5 262.115 314.927 131.103 1 91.73 ? C6 SAM 1301 I 1 
HETATM 23 N N6 SAM . . . X 5 263.053 315.783 131.557 1 91.73 ? N6 SAM 1301 I 1 
HETATM 24 N N1 SAM . . . X 5 262.382 314.076 130.098 1 91.73 ? N1 SAM 1301 I 1 
HETATM 25 C C2 SAM . . . X 5 261.465 313.216 129.631 1 91.73 ? C2 SAM 1301 I 1 
HETATM 26 N N3 SAM . . . X 5 260.224 313.137 130.122 1 91.73 ? N3 SAM 1301 I 1 
HETATM 27 C C4 SAM . . . X 5 259.818 313.927 131.131 1 91.73 ? C4 SAM 1301 I 1 
HETATM 28 H HN1 SAM . . . X 5 250.15 314.656 126.623 1 91.73 ? HN1 SAM 1301 I 1 
HETATM 29 H HN2 SAM . . . X 5 251.895 314.546 126.685 1 91.73 ? HN2 SAM 1301 I 1 
HETATM 30 H HA SAM . . . X 5 249.974 313.8 128.329 1 91.73 ? HA SAM 1301 I 1 
HETATM 31 H HB1 SAM . . . X 5 251.623 312.652 129.969 1 91.73 ? HB1 SAM 1301 I 1 
HETATM 32 H HB2 SAM . . . X 5 250.354 313.881 130.037 1 91.73 ? HB2 SAM 1301 I 1 
HETATM 33 H HG1 SAM . . . X 5 253.151 314.39 128.937 1 91.73 ? HG1 SAM 1301 I 1 
HETATM 34 H HG2 SAM . . . X 5 251.895 315.597 129.233 1 91.73 ? HG2 SAM 1301 I 1 
HETATM 35 H HE1 SAM . . . X 5 250.993 315.968 131.77 1 91.73 ? HE1 SAM 1301 I 1 
HETATM 36 H HE2 SAM . . . X 5 252.3 316.993 131.28 1 91.73 ? HE2 SAM 1301 I 1 
HETATM 37 H HE3 SAM . . . X 5 252.335 316.221 132.826 1 91.73 ? HE3 SAM 1301 I 1 
HETATM 38 H "H5'1" SAM . . . X 5 254.73 315.579 132.103 1 91.73 ? "H5'1" SAM 1301 I 1 
HETATM 39 H "H5'2" SAM . . . X 5 254.728 315.718 130.35 1 91.73 ? "H5'2" SAM 1301 I 1 
HETATM 40 H H4' SAM . . . X 5 254.777 313.151 130.264 1 91.73 ? H4' SAM 1301 I 1 
HETATM 41 H H3' SAM . . . X 5 254.641 313.425 133.126 1 91.73 ? H3' SAM 1301 I 1 
HETATM 42 H HO3' SAM . . . X 5 254 311.43 132.716 1 91.73 ? HO3' SAM 1301 I 1 
HETATM 43 H H2' SAM . . . X 5 256.811 313.518 133.613 1 91.73 ? H2' SAM 1301 I 1 
HETATM 44 H HO2' SAM . . . X 5 256.457 310.876 132.679 1 91.73 ? HO2' SAM 1301 I 1 
HETATM 45 H H1' SAM . . . X 5 257.725 312.368 130.977 1 91.73 ? H1' SAM 1301 I 1 
HETATM 46 H H8 SAM . . . X 5 258.113 315.391 133.425 1 91.73 ? H8 SAM 1301 I 1 
HETATM 47 H HN61 SAM . . . X 5 262.833 316.416 132.314 1 91.73 ? HN61 SAM 1301 I 1 
HETATM 48 H HN62 SAM . . . X 5 263.973 315.792 131.142 1 91.73 ? HN62 SAM 1301 I 1 
HETATM 49 H H2 SAM . . . X 5 261.744 312.555 128.82 1 91.73 ? H2 SAM 1301 I 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    625 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           49 
#