data_7YEZ
#
_model_server_result.job_id            7N1a5Vbnd9t88WIvZPQ3fg 
_model_server_result.datetime_utc      '2024-10-19 06:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7yez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1301}' 
#
_entry.id    7YEZ 
#
_exptl.entry_id    7YEZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              398.437 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYLMETHIONINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YEZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 W N N 
? 5 X N N 
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 S SG CYS 183 b CYS 183 1_555 BA ZN ZN . b ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc2 S SG CYS 186 b CYS 186 1_555 BA ZN ZN . b ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
#
_chem_comp.formula           'C15 H22 N6 O5 S' 
_chem_comp.formula_weight    398.437 
_chem_comp.id                SAM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYLMETHIONINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAM sing 275 n n 
N HN1 SAM sing 276 n n 
N HN2 SAM sing 277 n n 
CA C SAM sing 278 n n 
CA CB SAM sing 279 n n 
CA HA SAM sing 280 n n 
C O SAM doub 281 n n 
C OXT SAM sing 282 n n 
CB CG SAM sing 283 n n 
CB HB1 SAM sing 284 n n 
CB HB2 SAM sing 285 n n 
CG SD SAM sing 286 n n 
CG HG1 SAM sing 287 n n 
CG HG2 SAM sing 288 n n 
SD CE SAM sing 289 n n 
SD C5' SAM sing 290 n n 
CE HE1 SAM sing 291 n n 
CE HE2 SAM sing 292 n n 
CE HE3 SAM sing 293 n n 
C5' C4' SAM sing 294 n n 
C5' "H5'1" SAM sing 295 n n 
C5' "H5'2" SAM sing 296 n n 
C4' O4' SAM sing 297 n n 
C4' C3' SAM sing 298 n n 
C4' H4' SAM sing 299 n n 
O4' C1' SAM sing 300 n n 
C3' O3' SAM sing 301 n n 
C3' C2' SAM sing 302 n n 
C3' H3' SAM sing 303 n n 
O3' HO3' SAM sing 304 n n 
C2' O2' SAM sing 305 n n 
C2' C1' SAM sing 306 n n 
C2' H2' SAM sing 307 n n 
O2' HO2' SAM sing 308 n n 
C1' N9 SAM sing 309 n n 
C1' H1' SAM sing 310 n n 
N9 C8 SAM sing 311 n y 
N9 C4 SAM sing 312 n y 
C8 N7 SAM doub 313 n y 
C8 H8 SAM sing 314 n n 
N7 C5 SAM sing 315 n y 
C5 C6 SAM sing 316 n y 
C5 C4 SAM doub 317 n y 
C6 N6 SAM sing 318 n n 
C6 N1 SAM doub 319 n y 
N6 HN61 SAM sing 320 n n 
N6 HN62 SAM sing 321 n n 
N1 C2 SAM sing 322 n y 
C2 N3 SAM doub 323 n y 
C2 H2 SAM sing 324 n n 
N3 C4 SAM sing 325 n y 
#
_atom_sites.entry_id                     7YEZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 5 SAM H 1 1301 1301 SAM SAM . 
X 5 SAM I 1 1301 1301 SAM SAM . 
Y 5 SAM J 1 1301 1301 SAM SAM . 
Z 5 SAM K 1 1301 1301 SAM SAM . 
AA 5 SAM L 1 1301 1301 SAM SAM . 
BA 6 ZN b 1 2001 2001 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAM . . . Z 5 207.807 244.033 82.901 1 90.42 ? N SAM 1301 K 1 
HETATM 2 C CA SAM . . . Z 5 208.399 243.625 84.139 1 90.42 ? CA SAM 1301 K 1 
HETATM 3 C C SAM . . . Z 5 209.824 243.942 83.949 1 90.42 ? C SAM 1301 K 1 
HETATM 4 O O SAM . . . Z 5 210.533 244.181 84.94 1 90.42 ? O SAM 1301 K 1 
HETATM 5 O OXT SAM . . . Z 5 210.225 243.965 82.778 1 90.42 ? OXT SAM 1301 K 1 
HETATM 6 C CB SAM . . . Z 5 208.212 242.137 84.391 1 90.42 ? CB SAM 1301 K 1 
HETATM 7 C CG SAM . . . Z 5 208.273 241.237 83.151 1 90.42 ? CG SAM 1301 K 1 
HETATM 8 S SD SAM . . . Z 5 208.172 239.619 83.621 1 90.42 ? SD SAM 1301 K 1 
HETATM 9 C CE SAM . . . Z 5 209.583 238.924 84.217 1 90.42 ? CE SAM 1301 K 1 
HETATM 10 C C5' SAM . . . Z 5 207.14 238.603 82.762 1 90.42 ? C5' SAM 1301 K 1 
HETATM 11 C C4' SAM . . . Z 5 205.855 238.376 83.55 1 90.42 ? C4' SAM 1301 K 1 
HETATM 12 O O4' SAM . . . Z 5 204.899 237.702 82.734 1 90.42 ? O4' SAM 1301 K 1 
HETATM 13 C C3' SAM . . . Z 5 206.028 237.527 84.8 1 90.42 ? C3' SAM 1301 K 1 
HETATM 14 O O3' SAM . . . Z 5 205.722 238.289 85.968 1 90.42 ? O3' SAM 1301 K 1 
HETATM 15 C C2' SAM . . . Z 5 205.058 236.377 84.649 1 90.42 ? C2' SAM 1301 K 1 
HETATM 16 O O2' SAM . . . Z 5 204.335 236.154 85.858 1 90.42 ? O2' SAM 1301 K 1 
HETATM 17 C C1' SAM . . . Z 5 204.124 236.813 83.53 1 90.42 ? C1' SAM 1301 K 1 
HETATM 18 N N9 SAM . . . Z 5 203.564 235.723 82.683 1 90.42 ? N9 SAM 1301 K 1 
HETATM 19 C C8 SAM . . . Z 5 204.168 234.595 82.259 1 90.42 ? C8 SAM 1301 K 1 
HETATM 20 N N7 SAM . . . Z 5 203.329 233.852 81.5 1 90.42 ? N7 SAM 1301 K 1 
HETATM 21 C C5 SAM . . . Z 5 202.166 234.501 81.419 1 90.42 ? C5 SAM 1301 K 1 
HETATM 22 C C6 SAM . . . Z 5 200.865 234.267 80.771 1 90.42 ? C6 SAM 1301 K 1 
HETATM 23 N N6 SAM . . . Z 5 200.641 233.156 80.038 1 90.42 ? N6 SAM 1301 K 1 
HETATM 24 N N1 SAM . . . Z 5 199.909 235.198 80.935 1 90.42 ? N1 SAM 1301 K 1 
HETATM 25 C C2 SAM . . . Z 5 200.112 236.306 81.662 1 90.42 ? C2 SAM 1301 K 1 
HETATM 26 N N3 SAM . . . Z 5 201.274 236.571 82.27 1 90.42 ? N3 SAM 1301 K 1 
HETATM 27 C C4 SAM . . . Z 5 202.324 235.729 82.193 1 90.42 ? C4 SAM 1301 K 1 
HETATM 28 H HN1 SAM . . . Z 5 208.358 244.517 82.207 1 90.42 ? HN1 SAM 1301 K 1 
HETATM 29 H HN2 SAM . . . Z 5 206.831 243.846 82.725 1 90.42 ? HN2 SAM 1301 K 1 
HETATM 30 H HA SAM . . . Z 5 207.987 244.2 84.979 1 90.42 ? HA SAM 1301 K 1 
HETATM 31 H HB1 SAM . . . Z 5 208.977 241.806 85.097 1 90.42 ? HB1 SAM 1301 K 1 
HETATM 32 H HB2 SAM . . . Z 5 207.246 241.986 84.875 1 90.42 ? HB2 SAM 1301 K 1 
HETATM 33 H HG1 SAM . . . Z 5 209.205 241.397 82.607 1 90.42 ? HG1 SAM 1301 K 1 
HETATM 34 H HG2 SAM . . . Z 5 207.441 241.455 82.479 1 90.42 ? HG2 SAM 1301 K 1 
HETATM 35 H HE1 SAM . . . Z 5 209.428 237.888 84.374 1 90.42 ? HE1 SAM 1301 K 1 
HETATM 36 H HE2 SAM . . . Z 5 209.842 239.385 85.134 1 90.42 ? HE2 SAM 1301 K 1 
HETATM 37 H HE3 SAM . . . Z 5 210.363 239.063 83.517 1 90.42 ? HE3 SAM 1301 K 1 
HETATM 38 H "H5'1" SAM . . . Z 5 207.633 237.648 82.567 1 90.42 ? "H5'1" SAM 1301 K 1 
HETATM 39 H "H5'2" SAM . . . Z 5 206.902 239.056 81.8 1 90.42 ? "H5'2" SAM 1301 K 1 
HETATM 40 H H4' SAM . . . Z 5 205.459 239.358 83.85 1 90.42 ? H4' SAM 1301 K 1 
HETATM 41 H H3' SAM . . . Z 5 207.049 237.129 84.857 1 90.42 ? H3' SAM 1301 K 1 
HETATM 42 H HO3' SAM . . . Z 5 205.976 237.788 86.755 1 90.42 ? HO3' SAM 1301 K 1 
HETATM 43 H H2' SAM . . . Z 5 205.635 235.484 84.383 1 90.42 ? H2' SAM 1301 K 1 
HETATM 44 H HO2' SAM . . . Z 5 204.832 235.543 86.419 1 90.42 ? HO2' SAM 1301 K 1 
HETATM 45 H H1' SAM . . . Z 5 203.3 237.375 83.991 1 90.42 ? H1' SAM 1301 K 1 
HETATM 46 H H8 SAM . . . Z 5 205.184 234.305 82.487 1 90.42 ? H8 SAM 1301 K 1 
HETATM 47 H HN61 SAM . . . Z 5 201.374 232.47 79.927 1 90.42 ? HN61 SAM 1301 K 1 
HETATM 48 H HN62 SAM . . . Z 5 199.742 233.011 79.601 1 90.42 ? HN62 SAM 1301 K 1 
HETATM 49 H H2 SAM . . . Z 5 199.303 237.018 81.757 1 90.42 ? H2 SAM 1301 K 1 
#
_model_server_stats.io_time_ms              129 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    372 
_model_server_stats.query_time_ms           433 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           49 
#