data_7YFJ # _model_server_result.job_id fnGAtl2wNiHFfHpwEeVdyA _model_server_result.datetime_utc '2024-12-21 18:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7YFJ # _exptl.entry_id 7YFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7YFJ _cell.length_a 62.754 _cell.length_b 62.754 _cell.length_c 336.345 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,F 1 1 A,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -31.377 54.346558 56.0575 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7YFJ _atom_sites.fract_transf_matrix[1][1] 0.015935 _atom_sites.fract_transf_matrix[1][2] 0.0092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO B 1 201 201 EDO EDO . D 3 GOL B 1 202 202 GOL GOL . E 4 HOH A 1 301 301 HOH HOH . E 4 HOH A 2 302 302 HOH HOH . E 4 HOH A 3 303 303 HOH HOH . E 4 HOH A 4 304 304 HOH HOH . E 4 HOH A 5 305 305 HOH HOH . E 4 HOH A 6 306 306 HOH HOH . E 4 HOH A 7 307 307 HOH HOH . E 4 HOH A 8 308 308 HOH HOH . E 4 HOH A 9 309 309 HOH HOH . E 4 HOH A 10 310 310 HOH HOH . E 4 HOH A 11 311 311 HOH HOH . E 4 HOH A 12 312 312 HOH HOH . E 4 HOH A 13 313 313 HOH HOH . E 4 HOH A 14 314 314 HOH HOH . E 4 HOH A 15 315 315 HOH HOH . E 4 HOH A 16 316 316 HOH HOH . E 4 HOH A 17 317 317 HOH HOH . E 4 HOH A 18 318 318 HOH HOH . E 4 HOH A 19 319 319 HOH HOH . E 4 HOH A 20 320 320 HOH HOH . E 4 HOH A 21 321 321 HOH HOH . E 4 HOH A 22 322 322 HOH HOH . E 4 HOH A 23 323 323 HOH HOH . E 4 HOH A 24 324 324 HOH HOH . E 4 HOH A 25 325 325 HOH HOH . E 4 HOH A 26 326 326 HOH HOH . E 4 HOH A 27 327 327 HOH HOH . E 4 HOH A 28 328 328 HOH HOH . E 4 HOH A 29 329 329 HOH HOH . E 4 HOH A 30 330 330 HOH HOH . E 4 HOH A 31 331 331 HOH HOH . E 4 HOH A 32 332 332 HOH HOH . E 4 HOH A 33 333 333 HOH HOH . E 4 HOH A 34 334 334 HOH HOH . E 4 HOH A 35 335 335 HOH HOH . E 4 HOH A 36 336 336 HOH HOH . E 4 HOH A 37 337 337 HOH HOH . E 4 HOH A 38 338 338 HOH HOH . E 4 HOH A 39 339 339 HOH HOH . E 4 HOH A 40 340 340 HOH HOH . E 4 HOH A 41 341 341 HOH HOH . E 4 HOH A 42 342 342 HOH HOH . F 4 HOH B 1 301 301 HOH HOH . F 4 HOH B 2 302 302 HOH HOH . F 4 HOH B 3 303 303 HOH HOH . F 4 HOH B 4 304 304 HOH HOH . F 4 HOH B 5 305 305 HOH HOH . F 4 HOH B 6 306 306 HOH HOH . F 4 HOH B 7 307 307 HOH HOH . F 4 HOH B 8 308 308 HOH HOH . F 4 HOH B 9 309 309 HOH HOH . F 4 HOH B 10 310 310 HOH HOH . F 4 HOH B 11 311 311 HOH HOH . F 4 HOH B 12 312 312 HOH HOH . F 4 HOH B 13 313 313 HOH HOH . F 4 HOH B 14 314 314 HOH HOH . F 4 HOH B 15 315 315 HOH HOH . F 4 HOH B 16 316 316 HOH HOH . F 4 HOH B 17 317 317 HOH HOH . F 4 HOH B 18 318 318 HOH HOH . F 4 HOH B 19 319 319 HOH HOH . F 4 HOH B 20 320 320 HOH HOH . F 4 HOH B 21 321 321 HOH HOH . F 4 HOH B 22 322 322 HOH HOH . F 4 HOH B 23 323 323 HOH HOH . F 4 HOH B 24 324 324 HOH HOH . F 4 HOH B 25 325 325 HOH HOH . F 4 HOH B 26 326 326 HOH HOH . F 4 HOH B 27 327 327 HOH HOH . F 4 HOH B 28 328 328 HOH HOH . F 4 HOH B 29 329 329 HOH HOH . F 4 HOH B 30 330 330 HOH HOH . F 4 HOH B 31 331 331 HOH HOH . F 4 HOH B 32 332 332 HOH HOH . F 4 HOH B 33 333 333 HOH HOH . F 4 HOH B 34 334 334 HOH HOH . F 4 HOH B 35 335 335 HOH HOH . F 4 HOH B 36 336 336 HOH HOH . F 4 HOH B 37 337 337 HOH HOH . F 4 HOH B 38 338 338 HOH HOH . F 4 HOH B 39 339 339 HOH HOH . F 4 HOH B 40 340 340 HOH HOH . F 4 HOH B 41 341 341 HOH HOH . F 4 HOH B 42 342 342 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 18.264 43.262 20.057 1 110.07 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . D 3 16.995 42.751 20.406 1 109.59 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . D 3 18.244 44.255 18.887 1 112.04 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . D 3 18.724 43.602 17.719 1 112.78 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . D 3 16.859 44.857 18.649 1 108.98 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . D 3 16.926 46.192 18.174 1 104.67 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #