data_7YGG
#
_model_server_result.job_id            LiXwdxo7y_xceMfRqbuEUw 
_model_server_result.datetime_utc      '2024-11-26 05:46:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ygg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    7YGG 
#
_exptl.entry_id    7YGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7YGG 
_cell.length_a            53.58 
_cell.length_b            99.64 
_cell.length_c            138.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7YGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,L,N 1 1 
B,D,I,J,K,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 B SG CYS 25 B CYS 25 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 C SG CYS 23 C CYS 23 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 D SG CYS 23 D CYS 23 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
covale ? covale1 C C PCA 1 C PCA 1 1_555 C N LEU 2 C LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 C ND2 ASN 16 C ASN 16 1_555 G C1 NAG . C NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale3 C ND2 ASN 93 C ASN 93 1_555 F C1 NAG . C NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 D C PCA 1 D PCA 1 1_555 D N LEU 2 D LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 D ND2 ASN 16 D ASN 16 1_555 I C1 NAG . D NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 D ND2 ASN 93 D ASN 93 1_555 J C1 NAG . D NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     7YGG 
_atom_sites.fract_transf_matrix[1][1]    0.018664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007198 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 201 1 EDO EDO . 
F 4 NAG C 1 201 117 NAG NAG . 
G 4 NAG C 1 202 118 NAG NAG . 
H 3 EDO C 1 203 2 EDO EDO . 
I 4 NAG D 1 201 117 NAG NAG . 
J 4 NAG D 1 202 118 NAG NAG . 
K 3 EDO D 1 203 3 EDO EDO . 
L 5 HOH A 1 301 100 HOH HOH . 
L 5 HOH A 2 302 2 HOH HOH . 
L 5 HOH A 3 303 41 HOH HOH . 
L 5 HOH A 4 304 3 HOH HOH . 
L 5 HOH A 5 305 109 HOH HOH . 
L 5 HOH A 6 306 60 HOH HOH . 
L 5 HOH A 7 307 56 HOH HOH . 
L 5 HOH A 8 308 79 HOH HOH . 
L 5 HOH A 9 309 140 HOH HOH . 
L 5 HOH A 10 310 32 HOH HOH . 
L 5 HOH A 11 311 78 HOH HOH . 
L 5 HOH A 12 312 39 HOH HOH . 
L 5 HOH A 13 313 33 HOH HOH . 
L 5 HOH A 14 314 44 HOH HOH . 
L 5 HOH A 15 315 107 HOH HOH . 
L 5 HOH A 16 316 37 HOH HOH . 
L 5 HOH A 17 317 80 HOH HOH . 
L 5 HOH A 18 318 19 HOH HOH . 
L 5 HOH A 19 319 6 HOH HOH . 
L 5 HOH A 20 320 82 HOH HOH . 
L 5 HOH A 21 321 55 HOH HOH . 
L 5 HOH A 22 322 128 HOH HOH . 
L 5 HOH A 23 323 48 HOH HOH . 
L 5 HOH A 24 324 59 HOH HOH . 
L 5 HOH A 25 325 26 HOH HOH . 
L 5 HOH A 26 326 90 HOH HOH . 
L 5 HOH A 27 327 103 HOH HOH . 
L 5 HOH A 28 328 29 HOH HOH . 
L 5 HOH A 29 329 58 HOH HOH . 
L 5 HOH A 30 330 137 HOH HOH . 
L 5 HOH A 31 331 34 HOH HOH . 
L 5 HOH A 32 332 123 HOH HOH . 
L 5 HOH A 33 333 121 HOH HOH . 
L 5 HOH A 34 334 76 HOH HOH . 
L 5 HOH A 35 335 102 HOH HOH . 
L 5 HOH A 36 336 124 HOH HOH . 
L 5 HOH A 37 337 75 HOH HOH . 
L 5 HOH A 38 338 81 HOH HOH . 
M 5 HOH B 1 201 28 HOH HOH . 
M 5 HOH B 2 202 53 HOH HOH . 
M 5 HOH B 3 203 16 HOH HOH . 
M 5 HOH B 4 204 131 HOH HOH . 
M 5 HOH B 5 205 31 HOH HOH . 
M 5 HOH B 6 206 15 HOH HOH . 
M 5 HOH B 7 207 122 HOH HOH . 
M 5 HOH B 8 208 143 HOH HOH . 
M 5 HOH B 9 209 4 HOH HOH . 
M 5 HOH B 10 210 8 HOH HOH . 
M 5 HOH B 11 211 142 HOH HOH . 
M 5 HOH B 12 212 30 HOH HOH . 
M 5 HOH B 13 213 105 HOH HOH . 
M 5 HOH B 14 214 135 HOH HOH . 
M 5 HOH B 15 215 139 HOH HOH . 
M 5 HOH B 16 216 104 HOH HOH . 
M 5 HOH B 17 217 133 HOH HOH . 
M 5 HOH B 18 218 134 HOH HOH . 
N 5 HOH C 1 301 57 HOH HOH . 
N 5 HOH C 2 302 52 HOH HOH . 
N 5 HOH C 3 303 69 HOH HOH . 
N 5 HOH C 4 304 94 HOH HOH . 
N 5 HOH C 5 305 91 HOH HOH . 
N 5 HOH C 6 306 45 HOH HOH . 
N 5 HOH C 7 307 88 HOH HOH . 
N 5 HOH C 8 308 119 HOH HOH . 
N 5 HOH C 9 309 14 HOH HOH . 
N 5 HOH C 10 310 20 HOH HOH . 
N 5 HOH C 11 311 22 HOH HOH . 
N 5 HOH C 12 312 7 HOH HOH . 
N 5 HOH C 13 313 106 HOH HOH . 
N 5 HOH C 14 314 83 HOH HOH . 
N 5 HOH C 15 315 108 HOH HOH . 
N 5 HOH C 16 316 99 HOH HOH . 
N 5 HOH C 17 317 71 HOH HOH . 
N 5 HOH C 18 318 49 HOH HOH . 
N 5 HOH C 19 319 47 HOH HOH . 
N 5 HOH C 20 320 120 HOH HOH . 
N 5 HOH C 21 321 126 HOH HOH . 
N 5 HOH C 22 322 46 HOH HOH . 
N 5 HOH C 23 323 50 HOH HOH . 
N 5 HOH C 24 324 72 HOH HOH . 
N 5 HOH C 25 325 11 HOH HOH . 
N 5 HOH C 26 326 23 HOH HOH . 
N 5 HOH C 27 327 127 HOH HOH . 
N 5 HOH C 28 328 101 HOH HOH . 
N 5 HOH C 29 329 21 HOH HOH . 
N 5 HOH C 30 330 54 HOH HOH . 
N 5 HOH C 31 331 129 HOH HOH . 
N 5 HOH C 32 332 132 HOH HOH . 
N 5 HOH C 33 333 98 HOH HOH . 
N 5 HOH C 34 334 70 HOH HOH . 
N 5 HOH C 35 335 136 HOH HOH . 
N 5 HOH C 36 336 125 HOH HOH . 
N 5 HOH C 37 337 73 HOH HOH . 
N 5 HOH C 38 338 89 HOH HOH . 
N 5 HOH C 39 339 43 HOH HOH . 
N 5 HOH C 40 340 74 HOH HOH . 
N 5 HOH C 41 341 95 HOH HOH . 
N 5 HOH C 42 342 85 HOH HOH . 
N 5 HOH C 43 343 86 HOH HOH . 
N 5 HOH C 44 344 84 HOH HOH . 
N 5 HOH C 45 345 130 HOH HOH . 
N 5 HOH C 46 346 77 HOH HOH . 
O 5 HOH D 1 301 96 HOH HOH . 
O 5 HOH D 2 302 92 HOH HOH . 
O 5 HOH D 3 303 97 HOH HOH . 
O 5 HOH D 4 304 87 HOH HOH . 
O 5 HOH D 5 305 40 HOH HOH . 
O 5 HOH D 6 306 67 HOH HOH . 
O 5 HOH D 7 307 144 HOH HOH . 
O 5 HOH D 8 308 36 HOH HOH . 
O 5 HOH D 9 309 42 HOH HOH . 
O 5 HOH D 10 310 111 HOH HOH . 
O 5 HOH D 11 311 9 HOH HOH . 
O 5 HOH D 12 312 12 HOH HOH . 
O 5 HOH D 13 313 1 HOH HOH . 
O 5 HOH D 14 314 10 HOH HOH . 
O 5 HOH D 15 315 35 HOH HOH . 
O 5 HOH D 16 316 66 HOH HOH . 
O 5 HOH D 17 317 24 HOH HOH . 
O 5 HOH D 18 318 113 HOH HOH . 
O 5 HOH D 19 319 51 HOH HOH . 
O 5 HOH D 20 320 17 HOH HOH . 
O 5 HOH D 21 321 64 HOH HOH . 
O 5 HOH D 22 322 115 HOH HOH . 
O 5 HOH D 23 323 5 HOH HOH . 
O 5 HOH D 24 324 61 HOH HOH . 
O 5 HOH D 25 325 13 HOH HOH . 
O 5 HOH D 26 326 38 HOH HOH . 
O 5 HOH D 27 327 25 HOH HOH . 
O 5 HOH D 28 328 27 HOH HOH . 
O 5 HOH D 29 329 110 HOH HOH . 
O 5 HOH D 30 330 18 HOH HOH . 
O 5 HOH D 31 331 93 HOH HOH . 
O 5 HOH D 32 332 141 HOH HOH . 
O 5 HOH D 33 333 62 HOH HOH . 
O 5 HOH D 34 334 117 HOH HOH . 
O 5 HOH D 35 335 63 HOH HOH . 
O 5 HOH D 36 336 118 HOH HOH . 
O 5 HOH D 37 337 65 HOH HOH . 
O 5 HOH D 38 338 114 HOH HOH . 
O 5 HOH D 39 339 112 HOH HOH . 
O 5 HOH D 40 340 138 HOH HOH . 
O 5 HOH D 41 341 68 HOH HOH . 
O 5 HOH D 42 342 116 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 16.539 19.426 11.514 1 38.09 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . E 3 16.892 20.703 11.016 1 36.86 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . E 3 15.273 19.413 12.294 1 38.13 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . E 3 14.162 18.917 11.566 1 38.65 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#