data_7YGQ # _model_server_result.job_id D5DDP6D2CoMt4EiKDf1FYA _model_server_result.datetime_utc '2024-11-07 21:57:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ygq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7YGQ # _exptl.entry_id 7YGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 575.679 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 91.201 _cell.angle_beta 102.721 _cell.angle_gamma 108.432 _cell.entry_id 7YGQ _cell.length_a 55.056 _cell.length_b 60.592 _cell.length_c 68.303 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C30 H33 N5 O5 S' _chem_comp.formula_weight 575.679 _chem_comp.id HUR _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-[[(2S)-1-(1,3-benzothiazol-2-yl)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-methoxy-1H-indole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C18 HUR sing 152 n n N4 C17 HUR sing 153 n n O5 C18 HUR doub 154 n n C18 C15 HUR sing 155 n n C17 C16 HUR sing 156 n n C16 C15 HUR sing 157 n n C15 C14 HUR sing 158 n n O4 C19 HUR doub 159 n n C14 C13 HUR sing 160 n n C19 C13 HUR sing 161 n n C19 C20 HUR sing 162 n n C13 N3 HUR sing 163 n n C20 N5 HUR doub 164 n y C20 S1 HUR sing 165 n y N5 C21 HUR sing 166 n y N3 C12 HUR sing 167 n n O3 C12 HUR doub 168 n n C12 C11 HUR sing 169 n n C21 C23 HUR doub 170 n y C21 C22 HUR sing 171 n y S1 C22 HUR sing 172 n y O2 C10 HUR doub 173 n n C23 C24 HUR sing 174 n y C22 C26 HUR doub 175 n y N1 C7 HUR sing 176 n y N1 C4 HUR sing 177 n y C10 C7 HUR sing 178 n n C10 N2 HUR sing 179 n n C11 N2 HUR sing 180 n n C11 C27 HUR sing 181 n n C24 C25 HUR doub 182 n y C7 C8 HUR doub 183 n y C3 C4 HUR doub 184 n y C3 C2 HUR sing 185 n y C26 C25 HUR sing 186 n y C4 C5 HUR sing 187 n y C27 C28 HUR sing 188 n n C2 C1 HUR doub 189 n y C8 C5 HUR sing 190 n y C5 C6 HUR doub 191 n y C30 C28 HUR sing 192 n n C28 C29 HUR sing 193 n n C1 C6 HUR sing 194 n y C6 O1 HUR sing 195 n n O1 C9 HUR sing 196 n n C1 H1 HUR sing 197 n n C11 H2 HUR sing 198 n n C13 H3 HUR sing 199 n n C14 H4 HUR sing 200 n n C14 H5 HUR sing 201 n n C15 H6 HUR sing 202 n n C16 H7 HUR sing 203 n n C16 H8 HUR sing 204 n n C17 H9 HUR sing 205 n n C17 H10 HUR sing 206 n n C2 H11 HUR sing 207 n n C23 H12 HUR sing 208 n n C24 H13 HUR sing 209 n n C25 H14 HUR sing 210 n n C26 H15 HUR sing 211 n n C27 H16 HUR sing 212 n n C27 H17 HUR sing 213 n n C28 H18 HUR sing 214 n n C29 H19 HUR sing 215 n n C29 H20 HUR sing 216 n n C29 H21 HUR sing 217 n n C3 H22 HUR sing 218 n n C30 H23 HUR sing 219 n n C30 H24 HUR sing 220 n n C30 H25 HUR sing 221 n n C8 H26 HUR sing 222 n n C9 H27 HUR sing 223 n n C9 H28 HUR sing 224 n n C9 H29 HUR sing 225 n n N1 H30 HUR sing 226 n n N2 H31 HUR sing 227 n n N3 H32 HUR sing 228 n n N4 H33 HUR sing 229 n n # _atom_sites.entry_id 7YGQ _atom_sites.fract_transf_matrix[1][1] 0.018163 _atom_sites.fract_transf_matrix[1][2] 0.006053 _atom_sites.fract_transf_matrix[1][3] 0.004715 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017396 _atom_sites.fract_transf_matrix[2][3] 0.001711 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HUR A 1 401 1 HUR HUR . D 2 HUR B 1 401 2 HUR HUR . E 3 HOH A 1 501 23 HOH HOH . E 3 HOH A 2 502 32 HOH HOH . E 3 HOH A 3 503 44 HOH HOH . E 3 HOH A 4 504 25 HOH HOH . E 3 HOH A 5 505 8 HOH HOH . E 3 HOH A 6 506 14 HOH HOH . E 3 HOH A 7 507 42 HOH HOH . E 3 HOH A 8 508 1 HOH HOH . E 3 HOH A 9 509 20 HOH HOH . E 3 HOH A 10 510 9 HOH HOH . E 3 HOH A 11 511 3 HOH HOH . E 3 HOH A 12 512 5 HOH HOH . E 3 HOH A 13 513 16 HOH HOH . E 3 HOH A 14 514 35 HOH HOH . E 3 HOH A 15 515 15 HOH HOH . E 3 HOH A 16 516 18 HOH HOH . E 3 HOH A 17 517 38 HOH HOH . E 3 HOH A 18 518 11 HOH HOH . E 3 HOH A 19 519 46 HOH HOH . E 3 HOH A 20 520 37 HOH HOH . E 3 HOH A 21 521 7 HOH HOH . E 3 HOH A 22 522 33 HOH HOH . E 3 HOH A 23 523 6 HOH HOH . E 3 HOH A 24 524 10 HOH HOH . E 3 HOH A 25 525 40 HOH HOH . E 3 HOH A 26 526 4 HOH HOH . E 3 HOH A 27 527 17 HOH HOH . E 3 HOH A 28 528 36 HOH HOH . E 3 HOH A 29 529 49 HOH HOH . E 3 HOH A 30 530 31 HOH HOH . F 3 HOH B 1 501 12 HOH HOH . F 3 HOH B 2 502 26 HOH HOH . F 3 HOH B 3 503 39 HOH HOH . F 3 HOH B 4 504 13 HOH HOH . F 3 HOH B 5 505 43 HOH HOH . F 3 HOH B 6 506 19 HOH HOH . F 3 HOH B 7 507 2 HOH HOH . F 3 HOH B 8 508 21 HOH HOH . F 3 HOH B 9 509 27 HOH HOH . F 3 HOH B 10 510 34 HOH HOH . F 3 HOH B 11 511 28 HOH HOH . F 3 HOH B 12 512 24 HOH HOH . F 3 HOH B 13 513 22 HOH HOH . F 3 HOH B 14 514 41 HOH HOH . F 3 HOH B 15 515 30 HOH HOH . F 3 HOH B 16 516 47 HOH HOH . F 3 HOH B 17 517 29 HOH HOH . F 3 HOH B 18 518 50 HOH HOH . F 3 HOH B 19 519 45 HOH HOH . F 3 HOH B 20 520 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HUR . . . C 2 64.979 -35.112 -8.1 1 46.39 ? C1 HUR 401 A 1 HETATM 2 C C10 HUR . . . C 2 64.885 -34.809 -1.998 1 44.64 ? C10 HUR 401 A 1 HETATM 3 C C11 HUR . . . C 2 65.595 -33.467 -0.041 1 44.24 ? C11 HUR 401 A 1 HETATM 4 C C12 HUR . . . C 2 64.282 -32.985 0.555 1 35.74 ? C12 HUR 401 A 1 HETATM 5 C C13 HUR . . . C 2 62.717 -33.27 2.56 1 45.2 ? C13 HUR 401 A 1 HETATM 6 C C14 HUR . . . C 2 61.807 -34.486 2.673 1 34.8 ? C14 HUR 401 A 1 HETATM 7 C C15 HUR . . . C 2 61.321 -34.866 1.24 1 38.02 ? C15 HUR 401 A 1 HETATM 8 C C16 HUR . . . C 2 60.591 -33.89 0.756 1 44.13 ? C16 HUR 401 A 1 HETATM 9 C C17 HUR . . . C 2 59.346 -34.57 0.056 1 42.05 ? C17 HUR 401 A 1 HETATM 10 C C18 HUR . . . C 2 60.395 -36.272 1.195 1 36.58 ? C18 HUR 401 A 1 HETATM 11 C C19 HUR . . . C 2 62.813 -32.626 3.614 1 42.7 ? C19 HUR 401 A 1 HETATM 12 C C2 HUR . . . C 2 64.285 -36.29 -7.848 1 46.81 ? C2 HUR 401 A 1 HETATM 13 C C20 HUR . . . C 2 64.112 -31.453 3.56 1 43.61 ? C20 HUR 401 A 1 HETATM 14 C C21 HUR . . . C 2 64.398 -29.265 2.865 1 48.01 ? C21 HUR 401 A 1 HETATM 15 C C22 HUR . . . C 2 65.71 -29.479 3.246 1 46.26 ? C22 HUR 401 A 1 HETATM 16 C C23 HUR . . . C 2 64.014 -28.011 2.348 1 50.76 ? C23 HUR 401 A 1 HETATM 17 C C24 HUR . . . C 2 64.947 -26.999 2.225 1 51.86 ? C24 HUR 401 A 1 HETATM 18 C C25 HUR . . . C 2 66.269 -27.217 2.612 1 47.87 ? C25 HUR 401 A 1 HETATM 19 C C26 HUR . . . C 2 66.652 -28.461 3.123 1 45.89 ? C26 HUR 401 A 1 HETATM 20 C C27 HUR . . . C 2 66.68 -32.456 0.309 1 39.3 ? C27 HUR 401 A 1 HETATM 21 C C28 HUR . . . C 2 68.076 -33.01 0.052 1 42.81 ? C28 HUR 401 A 1 HETATM 22 C C29 HUR . . . C 2 69.065 -31.887 -0.238 1 43.7 ? C29 HUR 401 A 1 HETATM 23 C C3 HUR . . . C 2 64.01 -36.659 -6.545 1 44.92 ? C3 HUR 401 A 1 HETATM 24 C C30 HUR . . . C 2 68.552 -33.872 1.213 1 37.52 ? C30 HUR 401 A 1 HETATM 25 C C4 HUR . . . C 2 64.438 -35.843 -5.473 1 46.23 ? C4 HUR 401 A 1 HETATM 26 C C5 HUR . . . C 2 65.122 -34.688 -5.721 1 45.13 ? C5 HUR 401 A 1 HETATM 27 C C6 HUR . . . C 2 65.41 -34.303 -7.051 1 47.65 ? C6 HUR 401 A 1 HETATM 28 C C7 HUR . . . C 2 64.839 -35 -3.505 1 45.85 ? C7 HUR 401 A 1 HETATM 29 C C8 HUR . . . C 2 65.388 -34.134 -4.44 1 44.72 ? C8 HUR 401 A 1 HETATM 30 C C9 HUR . . . C 2 66.839 -32.989 -8.458 1 44.93 ? C9 HUR 401 A 1 HETATM 31 N N1 HUR . . . C 2 64.284 -36.007 -4.141 1 43.74 ? N1 HUR 401 A 1 HETATM 32 N N2 HUR . . . C 2 65.536 -33.638 -1.469 1 38 ? N2 HUR 401 A 1 HETATM 33 N N3 HUR . . . C 2 63.89 -33.605 1.794 1 47.51 ? N3 HUR 401 A 1 HETATM 34 N N4 HUR . . . C 2 59.186 -35.941 0.803 1 35.93 ? N4 HUR 401 A 1 HETATM 35 N N5 HUR . . . C 2 63.563 -30.365 3.038 1 41.78 ? N5 HUR 401 A 1 HETATM 36 O O1 HUR . . . C 2 66.108 -33.108 -7.271 1 48.66 ? O1 HUR 401 A 1 HETATM 37 O O2 HUR . . . C 2 64.4 -35.593 -1.264 1 37.54 ? O2 HUR 401 A 1 HETATM 38 O O3 HUR . . . C 2 63.628 -32.156 0.043 1 45.5 ? O3 HUR 401 A 1 HETATM 39 O O4 HUR . . . C 2 61.546 -32.972 4.455 1 48.79 ? O4 HUR 401 A 1 HETATM 40 O O5 HUR . . . C 2 60.334 -36.862 2.435 1 33.26 ? O5 HUR 401 A 1 HETATM 41 S S1 HUR . . . C 2 65.735 -31.094 3.797 1 42.48 ? S1 HUR 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #