data_7YI3 # _model_server_result.job_id NYYHT69782bf8RLklmcK_A _model_server_result.datetime_utc '2024-12-26 11:34:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yi3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":704}' # _entry.id 7YI3 # _exptl.entry_id 7YI3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7YI3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YI3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 186 B ASP 186 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 B OD2 ASP 186 B ASP 186 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc3 B ND1 HIS 188 B HIS 188 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B OD2 ASP 274 B ASP 274 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 D SG CYS 263 D CYS 263 1_555 H ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc6 D SG CYS 266 D CYS 266 1_555 H ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc7 D ND1 HIS 283 D HIS 283 1_555 H ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 D SG CYS 286 D CYS 286 1_555 H ZN ZN . D ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc9 D SG CYS 303 D CYS 303 1_555 I ZN ZN . D ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc10 D SG CYS 306 D CYS 306 1_555 I ZN ZN . D ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 D SG CYS 417 D CYS 417 1_555 G ZN ZN . D ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc12 D SG CYS 420 D CYS 420 1_555 G ZN ZN . D ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc13 D SG CYS 440 D CYS 440 1_555 J ZN ZN . D ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc14 D SG CYS 443 D CYS 443 1_555 J ZN ZN . D ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc15 D ND1 HIS 448 D HIS 448 1_555 G ZN ZN . D ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc16 D SG CYS 451 D CYS 451 1_555 G ZN ZN . D ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc17 D SG CYS 466 D CYS 466 1_555 J ZN ZN . D ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc18 D NE2 HIS 469 D HIS 469 1_555 J ZN ZN . D ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7YI3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 ZN B 1 501 2 ZN ZN . G 5 ZN D 1 701 1 ZN ZN . H 5 ZN D 1 702 3 ZN ZN . I 5 ZN D 1 703 4 ZN ZN . J 5 ZN D 1 704 5 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 5 _atom_site.Cartn_x 198.946 _atom_site.Cartn_y 158.689 _atom_site.Cartn_z 159.056 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 81.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 704 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #