data_7YI7 # _model_server_result.job_id wHyC9U1PRw33o2js_nkdGQ _model_server_result.datetime_utc '2025-04-26 16:46:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7yi7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7YI7 # _exptl.entry_id 7YI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.322 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-[4-(trifluoromethyl)phenyl]ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.16 _cell.angle_gamma 90 _cell.entry_id 7YI7 _cell.length_a 49.974 _cell.length_b 60.09 _cell.length_c 78.423 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 280 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 385 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 542 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H17 F3 N2 O5' _chem_comp.formula_weight 386.322 _chem_comp.id IUV _chem_comp.mon_nstd_flag . _chem_comp.name '(5~{S},6~{R},7~{S},8~{S})-6,7,8-tris(oxidanyl)-2-[2-[4-(trifluoromethyl)phenyl]ethyl]-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C2 IUV sing 173 n n C2 C3 IUV sing 174 n n C2 C1 IUV sing 175 n n O25 C3 IUV sing 176 n n C3 C4 IUV sing 177 n n O24 C1 IUV sing 178 n n C1 C6 IUV sing 179 n n C4 N7 IUV doub 180 n y C4 N5 IUV sing 181 n y C6 N5 IUV sing 182 n n C6 C22 IUV sing 183 n n F21 C18 IUV sing 184 n n N7 C8 IUV sing 185 n y C16 C17 IUV doub 186 n y C16 C15 IUV sing 187 n y N5 C9 IUV sing 188 n y C17 C12 IUV sing 189 n y C22 O26 IUV doub 190 n n C22 O27 IUV sing 191 n n F20 C18 IUV sing 192 n n C18 C15 IUV sing 193 n n C18 F19 IUV sing 194 n n C15 C14 IUV doub 195 n y C8 C9 IUV doub 196 n y C8 C10 IUV sing 197 n n C12 C11 IUV sing 198 n n C12 C13 IUV doub 199 n y C11 C10 IUV sing 200 n n C14 C13 IUV sing 201 n y C1 H1 IUV sing 202 n n C2 H2 IUV sing 203 n n C3 H3 IUV sing 204 n n C9 H4 IUV sing 205 n n C10 H5 IUV sing 206 n n C10 H6 IUV sing 207 n n C11 H7 IUV sing 208 n n C11 H8 IUV sing 209 n n C13 H9 IUV sing 210 n n C14 H10 IUV sing 211 n n C16 H11 IUV sing 212 n n O27 H12 IUV sing 213 n n C6 H13 IUV sing 214 n n O24 H14 IUV sing 215 n n O23 H15 IUV sing 216 n n O25 H16 IUV sing 217 n n C17 H17 IUV sing 218 n n # _atom_sites.entry_id 7YI7 _atom_sites.fract_transf_matrix[1][1] 0.02001 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000294 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IUV A 1 601 1543 IUV INH . D 4 HOH A 1 701 1652 HOH HOH . D 4 HOH A 2 702 1649 HOH HOH . D 4 HOH A 3 703 1647 HOH HOH . D 4 HOH A 4 704 1654 HOH HOH . D 4 HOH A 5 705 1644 HOH HOH . D 4 HOH A 6 706 1648 HOH HOH . D 4 HOH A 7 707 1653 HOH HOH . D 4 HOH A 8 708 1650 HOH HOH . D 4 HOH A 9 709 1643 HOH HOH . D 4 HOH A 10 710 1656 HOH HOH . D 4 HOH A 11 711 1651 HOH HOH . E 4 HOH B 1 201 209 HOH HOH . E 4 HOH B 2 202 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IUV . . . C 3 1.53 -8.794 14.268 1 44.5 ? C1 IUV 601 A 1 HETATM 2 C C2 IUV . . . C 3 2.779 -8.914 13.426 1 45.95 ? C2 IUV 601 A 1 HETATM 3 C C3 IUV . . . C 3 3.72 -10.033 13.889 1 51.69 ? C3 IUV 601 A 1 HETATM 4 C C8 IUV . . . C 3 3.588 -11.581 17.187 1 59.04 ? C8 IUV 601 A 1 HETATM 5 C C9 IUV . . . C 3 2.665 -10.553 17.297 1 53.88 ? C9 IUV 601 A 1 HETATM 6 C C10 IUV . . . C 3 3.976 -12.625 18.236 1 65.78 ? C10 IUV 601 A 1 HETATM 7 C C11 IUV . . . C 3 3.515 -14.075 17.886 1 78.21 ? C11 IUV 601 A 1 HETATM 8 C C12 IUV . . . C 3 2.027 -14.075 17.587 1 95.1 ? C12 IUV 601 A 1 HETATM 9 C C13 IUV . . . C 3 1.113 -14.311 18.621 1 105.54 ? C13 IUV 601 A 1 HETATM 10 C C14 IUV . . . C 3 -0.252 -14.28 18.362 1 107.52 ? C14 IUV 601 A 1 HETATM 11 C C15 IUV . . . C 3 -0.713 -13.99 17.076 1 111.15 ? C15 IUV 601 A 1 HETATM 12 C C16 IUV . . . C 3 0.195 -13.752 16.039 1 107.45 ? C16 IUV 601 A 1 HETATM 13 C C22 IUV . . . C 3 0.471 -8.714 16.473 1 44.12 ? C22 IUV 601 A 1 HETATM 14 O O27 IUV . . . C 3 0.052 -7.597 16.829 1 38.42 ? O27 IUV 601 A 1 HETATM 15 O O26 IUV . . . C 3 -0.153 -9.784 16.7 1 41.54 ? O26 IUV 601 A 1 HETATM 16 C C6 IUV . . . C 3 1.799 -8.73 15.757 1 46.53 ? C6 IUV 601 A 1 HETATM 17 N N5 IUV . . . C 3 2.628 -9.892 16.129 1 49.09 ? N5 IUV 601 A 1 HETATM 18 O O24 IUV . . . C 3 0.922 -7.567 13.896 1 43.44 ? O24 IUV 601 A 1 HETATM 19 O O23 IUV . . . C 3 2.373 -9.145 12.073 1 41.54 ? O23 IUV 601 A 1 HETATM 20 O O25 IUV . . . C 3 5.056 -9.568 13.741 1 56.9 ? O25 IUV 601 A 1 HETATM 21 C C4 IUV . . . C 3 3.476 -10.453 15.291 1 51.55 ? C4 IUV 601 A 1 HETATM 22 N N7 IUV . . . C 3 4.058 -11.482 15.927 1 55.59 ? N7 IUV 601 A 1 HETATM 23 C C17 IUV . . . C 3 1.561 -13.794 16.296 1 102.52 ? C17 IUV 601 A 1 HETATM 24 C C18 IUV . . . C 3 -2.191 -13.925 16.823 1 112.77 ? C18 IUV 601 A 1 HETATM 25 F F19 IUV . . . C 3 -2.797 -13.518 17.934 1 105.91 ? F19 IUV 601 A 1 HETATM 26 F F21 IUV . . . C 3 -2.464 -13.017 15.884 1 104.09 ? F21 IUV 601 A 1 HETATM 27 F F20 IUV . . . C 3 -2.598 -15.127 16.477 1 124.75 ? F20 IUV 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 835 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #